UHGV-0140648

Genome information

Genome length 61,567 bps

CDS count 105

Completeness 98.35% (high-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140648
vOTU ID	vOTU-009127
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_402285
BioSample	NA
Country	Russia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.35% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	33
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.96
Jumbo phage	No

Genome content
Genome length	61,567 bps
GC content	43.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	105
CDS density	92.90%
Average CDS length	546.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140648_1	KOfam	K14059	int; integrase	NA
UHGV-0140648_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0140648_1	UniRef90	UniRef90_A0A3S5C9R9	Site-specific recombinase XerD	NA
UHGV-0140648_1	eggNOG-mapper	428125.CLOLEP_01345	Belongs to the 'phage' integrase family	NA
UHGV-0140648_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0140648_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0140648_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0140648_5	PHROG	phrog_6058	NA	unknown function
UHGV-0140648_5	UniRef90	UniRef90_A0A4Q7P3C7	Prolyl-tRNA synthetase	NA
UHGV-0140648_5	eggNOG-mapper	665956.HMPREF1032_00623	NA	NA
UHGV-0140648_6	PHROG	phrog_11237	NA	unknown function
UHGV-0140648_6	eggNOG-mapper	742740.HMPREF9474_02326	NA	NA
UHGV-0140648_7	COG	COG1645	NA	NA
UHGV-0140648_7	Structural annotation	PF21344, NF002796	NA	NA
UHGV-0140648_8	PHROG	phrog_15866	NA	unknown function
UHGV-0140648_9	PHROG	phrog_17256	NA	unknown function
UHGV-0140648_9	eggNOG-mapper	742733.HMPREF9469_05087	NA	NA
UHGV-0140648_12	PHROG	phrog_2152	NA	unknown function
UHGV-0140648_12	UniRef90	UniRef90_UPI00156F7DE9	NA	NA
UHGV-0140648_12	eggNOG-mapper	742733.HMPREF9469_05083	NA	NA
UHGV-0140648_12	Pfam	PF19880	NA	DUF6353
UHGV-0140648_12	Structural annotation	PF19880	NA	NA
UHGV-0140648_15	PHROG	phrog_2152	NA	unknown function
UHGV-0140648_15	eggNOG-mapper	665956.HMPREF1032_00634	NA	NA
UHGV-0140648_15	Pfam	PF19880	NA	DUF6353
UHGV-0140648_15	Structural annotation	PF19880	NA	NA
UHGV-0140648_16	PHROG	phrog_4079	NA	unknown function
UHGV-0140648_16	eggNOG-mapper	665956.HMPREF1032_00637	NA	NA
UHGV-0140648_17	PHROG	phrog_2152	NA	unknown function
UHGV-0140648_17	UniRef90	UniRef90_UPI00164AE37E	NA	NA
UHGV-0140648_17	eggNOG-mapper	665950.HMPREF1025_01949	NA	NA
UHGV-0140648_17	Pfam	PF19880	NA	DUF6353
UHGV-0140648_17	Structural annotation	PF19880	NA	NA
UHGV-0140648_18	PHROG	phrog_4695	NA	unknown function
UHGV-0140648_18	eggNOG-mapper	742740.HMPREF9474_02307	NA	NA
UHGV-0140648_19	PHROG	phrog_4678	NA	unknown function
UHGV-0140648_19	UniRef90	UniRef90_UPI001E62D5A9	TRAP transporter TatT component family protein	NA
UHGV-0140648_19	eggNOG-mapper	478749.BRYFOR_08561	NA	NA
UHGV-0140648_20	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0140648_20	UniRef90	UniRef90_A0A2J4JS43	SF3 helicase domain-containing protein	NA
UHGV-0140648_20	eggNOG-mapper	428125.CLOLEP_01375	DNA polymerase type-B family	NA
UHGV-0140648_20	Pfam	PF19263	NA	DUF5906
UHGV-0140648_20	Structural annotation	PF00136, PF05272, PF09250, MF_04100, MF_00016, NF005477, NF004420, COG3378, COG0417	NA	NA
UHGV-0140648_22	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0140648_22	eggNOG-mapper	428125.CLOLEP_01377	NA	NA
UHGV-0140648_22	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-0140648_23	PHROG	phrog_236	nucleotide kinase	other
UHGV-0140648_23	UniRef90	UniRef90_UPI0013022309	NA	NA
UHGV-0140648_23	eggNOG-mapper	1173749.S4TNV2_9CAUD	NA	NA
UHGV-0140648_23	Pfam	PF11753	NA	DUF3310
UHGV-0140648_24	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0140648_24	UniRef90	UniRef90_A0A4Q5C8W0	Helicase ATP-binding domain-containing protein	NA
UHGV-0140648_24	eggNOG-mapper	742733.HMPREF9469_05062	Helicase conserved C-terminal domain	NA
UHGV-0140648_24	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0140648_24	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0140648_24	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-0140648_26	PHROG	phrog_19852	NA	unknown function
UHGV-0140648_26	eggNOG-mapper	742733.HMPREF9469_05061	NA	NA
UHGV-0140648_34	PHROG	phrog_20637	NA	unknown function
UHGV-0140648_34	UniRef90	UniRef90_UPI00164BCA8F	NA	NA
UHGV-0140648_34	eggNOG-mapper	411460.RUMTOR_01376	NA	NA
UHGV-0140648_34	Pfam	PF18907	NA	DUF5662
UHGV-0140648_34	Structural annotation	PF18907	NA	NA
UHGV-0140648_36	PHROG	phrog_6721	NA	unknown function
UHGV-0140648_36	eggNOG-mapper	428125.CLOLEP_01387	NA	NA
UHGV-0140648_36	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0140648_38	PHROG	phrog_419	NA	unknown function
UHGV-0140648_38	UniRef90	UniRef90_A0A0I7PZA1	NA	NA
UHGV-0140648_38	eggNOG-mapper	1277892.M1IRA5_9CAUD	NA	NA
UHGV-0140648_38	Structural annotation	PF14083	NA	NA
UHGV-0140648_41	PHROG	phrog_30930	NA	unknown function
UHGV-0140648_41	UniRef90	UniRef90_D2BQD3	NA	NA
UHGV-0140648_41	eggNOG-mapper	1214184.ALKY01000039_gene933	NA	NA
UHGV-0140648_43	PHROG	phrog_24386	NA	unknown function
UHGV-0140648_43	eggNOG-mapper	478749.BRYFOR_08546	UMP catabolic process	NA
UHGV-0140648_43	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-0140648_45	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0140648_45	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-0140648_45	eggNOG-mapper	411460.RUMTOR_01373	NA	NA
UHGV-0140648_45	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0140648_45	Structural annotation	PF12643, MF_01020, NF001610, COG0140	NA	NA
UHGV-0140648_63	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0140648_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140648_66	Structural annotation	PF18548	NA	NA
UHGV-0140648_70	UniRef90	UniRef90_A0A140G723	Holliday junction resolvase	NA
UHGV-0140648_70	eggNOG-mapper	742740.HMPREF9474_02280	NA	NA
UHGV-0140648_70	Structural annotation	PF01870, COG1591	NA	NA
UHGV-0140648_71	PHROG	phrog_3953	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0140648_71	UniRef90	UniRef90_A0A372V7I5	NA	NA
UHGV-0140648_71	eggNOG-mapper	411460.RUMTOR_01357	NA	NA
UHGV-0140648_71	Pfam	PF10926	NA	DUF2800
UHGV-0140648_71	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0140648_72	PHROG	phrog_4291	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0140648_72	UniRef90	UniRef90_A0A349YHZ6	Phage tail protein	NA
UHGV-0140648_72	eggNOG-mapper	665950.HMPREF1025_01987	NA	NA
UHGV-0140648_72	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0140648_72	Structural annotation	PF05183	NA	NA
UHGV-0140648_73	PHROG	phrog_4303	NA	unknown function
UHGV-0140648_73	eggNOG-mapper	742733.HMPREF9469_05038	NA	NA
UHGV-0140648_74	PHROG	phrog_4259	NA	unknown function
UHGV-0140648_74	UniRef90	UniRef90_D4P7B9	Gp008	NA
UHGV-0140648_74	eggNOG-mapper	691965.D4P7B9_9CAUD	NA	NA
UHGV-0140648_75	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0140648_75	UniRef90	UniRef90_A0A2U8UNL2	HNH endonuclease	NA
UHGV-0140648_75	eggNOG-mapper	411460.RUMTOR_01352	NA	NA
UHGV-0140648_76	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-0140648_76	eggNOG-mapper	428125.CLOLEP_01407	NA	NA
UHGV-0140648_77	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0140648_77	UniRef90	UniRef90_A0A173Z354	Phage terminase-like protein, large subunit	NA
UHGV-0140648_77	eggNOG-mapper	742740.HMPREF9474_02272	Phage Terminase	NA
UHGV-0140648_77	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0140648_77	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0140648_77	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0140648_77	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0140648_78	PHROG	phrog_32444	NA	unknown function
UHGV-0140648_78	eggNOG-mapper	428125.CLOLEP_01408	NA	NA
UHGV-0140648_79	PHROG	phrog_32444	NA	unknown function
UHGV-0140648_79	eggNOG-mapper	428125.CLOLEP_01408	NA	NA
UHGV-0140648_80	PHROG	phrog_12	portal protein	head and packaging
UHGV-0140648_80	UniRef90	UniRef90_UPI001D05DA00	phage portal protein	NA
UHGV-0140648_80	eggNOG-mapper	428125.CLOLEP_01411	Phage portal protein	NA
UHGV-0140648_80	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0140648_80	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0140648_81	KOfam	K06904	NA	NA
UHGV-0140648_81	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-0140648_81	UniRef90	UniRef90_A0A898FWG8	Caudovirus prohead protease	NA
UHGV-0140648_81	eggNOG-mapper	428125.CLOLEP_01412	Caudovirus prohead serine protease	NA
UHGV-0140648_81	Structural annotation	PF05065, PF04586, MF_04119, TIGR01554, TIGR01543, COG4653, COG3740	NA	NA
UHGV-0140648_83	PHROG	phrog_4270	NA	unknown function
UHGV-0140648_83	eggNOG-mapper	665956.HMPREF1032_00677	NA	NA
UHGV-0140648_83	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0140648_84	UniRef90	UniRef90_A0A5J6TS86	Tail terminator	NA
UHGV-0140648_84	eggNOG-mapper	742733.HMPREF9469_05027	NA	NA
UHGV-0140648_84	Structural annotation	PF20765	NA	NA
UHGV-0140648_85	PHROG	phrog_2645	major tail protein	tail
UHGV-0140648_85	UniRef90	UniRef90_A0A5J6TGG1	Major capsid protein	NA
UHGV-0140648_85	eggNOG-mapper	691965.D4P7D9_9CAUD	peptidase activity	NA
UHGV-0140648_85	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0140648_86	PHROG	phrog_4282	NA	unknown function
UHGV-0140648_86	eggNOG-mapper	428125.CLOLEP_01416	NA	NA
UHGV-0140648_87	PHROG	phrog_4338	NA	unknown function
UHGV-0140648_87	eggNOG-mapper	742733.HMPREF9469_05023	NA	NA
UHGV-0140648_88	UniRef90	UniRef90_A0A374JQF3	HK97 gp10 family phage protein	NA
UHGV-0140648_88	eggNOG-mapper	665956.HMPREF1032_00685	NA	NA
UHGV-0140648_88	Structural annotation	TIGR01725	NA	NA
UHGV-0140648_89	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0140648_89	UniRef90	UniRef90_UPI0018A04E48	tape measure protein	NA
UHGV-0140648_89	eggNOG-mapper	428125.CLOLEP_01422	phage tail tape measure protein	NA
UHGV-0140648_89	COG	COG5412	Phage-related protein	NA
UHGV-0140648_90	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0140648_90	UniRef90	UniRef90_A0A3A9IST2	Phage tail family protein	NA
UHGV-0140648_90	eggNOG-mapper	742740.HMPREF9474_02261	Phage tail protein	NA
UHGV-0140648_90	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0140648_90	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0140648_91	PHROG	phrog_538	minor tail protein	tail
UHGV-0140648_91	UniRef90	UniRef90_A0A1I7FBJ0	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0140648_91	eggNOG-mapper	665956.HMPREF1032_00688	NA	NA
UHGV-0140648_91	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0140648_91	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0140648_92	PHROG	phrog_1220	head protein	head and packaging
UHGV-0140648_92	eggNOG-mapper	411460.RUMTOR_01332	COG NOG18825 non supervised orthologous group	NA
UHGV-0140648_92	Structural annotation	PF20747	NA	NA
UHGV-0140648_93	Structural annotation	PF14686, PF07210, PF21582, TIGR03000, TIGR04183, COG2512	NA	NA
UHGV-0140648_99	PHROG	phrog_2649	endolysin	lysis
UHGV-0140648_99	UniRef90	UniRef90_A0A3B9T1B2	Peptidase C51 domain-containing protein	NA
UHGV-0140648_99	eggNOG-mapper	411684.HPDFL43_05910	Putative peptidoglycan binding domain	NA
UHGV-0140648_99	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0140648_99	Pfam	PF05257	CHAP domain	CHAP
UHGV-0140648_99	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0140648_102	PHROG	phrog_16490	NA	unknown function
UHGV-0140648_103	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0140648_104	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0140648_105	PHROG	phrog_4105	NA	unknown function
UHGV-0140648_105	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0140648_105	eggNOG-mapper	428125.CLOLEP_01431	NA	NA