UHGV-0140657

Genome information

Genome length 40,077 bps

CDS count 73

Completeness 98.13% (high-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140657
vOTU ID	vOTU-011878
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_397417
BioSample	SAMN05065739
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.13% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.76
Jumbo phage	No

Genome content
Genome length	40,077 bps
GC content	54.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	89.12%
Average CDS length	492.58 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140657_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0140657_1	PHROG	phrog_435	endolysin	lysis
UHGV-0140657_1	UniRef90	UniRef90_UPI0018AB799F	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0140657_1	eggNOG-mapper	1121344.JHZO01000003_gene744	Ami_3	NA
UHGV-0140657_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0140657_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0140657_1	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0140657_2	PHROG	phrog_1129	holin	lysis
UHGV-0140657_2	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-0140657_2	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0140657_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0140657_2	Structural annotation	PF06946	NA	NA
UHGV-0140657_3	PHROG	phrog_4105	NA	unknown function
UHGV-0140657_3	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0140657_4	UniRef90	UniRef90_U2R3E6	KORA domain-containing protein	NA
UHGV-0140657_4	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0140657_6	PHROG	phrog_3754	NA	unknown function
UHGV-0140657_6	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0140657_7	PHROG	phrog_21718	NA	unknown function
UHGV-0140657_7	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0140657_8	PHROG	phrog_22984	NA	unknown function
UHGV-0140657_9	PHROG	phrog_16490	NA	unknown function
UHGV-0140657_9	eggNOG-mapper	1226322.HMPREF1545_00076	NA	NA
UHGV-0140657_10	PHROG	phrog_20016	NA	unknown function
UHGV-0140657_10	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0140657_10	eggNOG-mapper	1485543.JMME01000025_gene2458	NA	NA
UHGV-0140657_10	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0140657_11	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0140657_12	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0140657_13	KOfam	K14059	int; integrase	NA
UHGV-0140657_13	PHROG	phrog_1	integrase	integration and excision
UHGV-0140657_13	UniRef90	UniRef90_UPI0018A8CCD8	site-specific integrase	NA
UHGV-0140657_13	eggNOG-mapper	1321814.HMPREF9089_00905	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0140657_13	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0140657_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0140657_13	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0140657_13	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0140657_14	PHROG	phrog_33872	NA	unknown function
UHGV-0140657_15	UniRef90	UniRef90_UPI001956EF77	stalk domain-containing protein	NA
UHGV-0140657_15	eggNOG-mapper	693746.OBV_27580	Copper amine oxidase N-terminal domain	NA
UHGV-0140657_15	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0140657_16	PHROG	phrog_87	metallo-protease	other
UHGV-0140657_16	UniRef90	UniRef90_G9YWB6	Peptidase_M78 domain-containing protein	NA
UHGV-0140657_16	eggNOG-mapper	445972.ANACOL_01758	NA	NA
UHGV-0140657_16	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0140657_16	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0140657_17	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0140657_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0140657_17	UniRef90	UniRef90_UPI0009522291	helix-turn-helix domain-containing protein	NA
UHGV-0140657_17	eggNOG-mapper	742738.HMPREF9460_02485	Helix-turn-helix XRE-family like proteins	NA
UHGV-0140657_17	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0140657_17	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0140657_17	Structural annotation	PF01381, MF_00535, NF007257, COG3655	NA	NA
UHGV-0140657_18	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0140657_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0140657_18	UniRef90	UniRef90_UPI0009FAA490	helix-turn-helix domain-containing protein	NA
UHGV-0140657_18	eggNOG-mapper	1519439.JPJG01000066_gene2398	Helix-turn-helix XRE-family like proteins	NA
UHGV-0140657_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140657_18	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0140657_21	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0140657_26	PHROG	phrog_674	NA	unknown function
UHGV-0140657_26	UniRef90	UniRef90_A0A847VXN8	NA	NA
UHGV-0140657_26	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0140657_26	Pfam	PF07083	NA	DUF1351
UHGV-0140657_26	Structural annotation	PF07083	NA	NA
UHGV-0140657_27	PHROG	phrog_3657	NA	unknown function
UHGV-0140657_27	UniRef90	UniRef90_UPI001DC4E782	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0140657_27	eggNOG-mapper	1567011.A0A0A7RUE9_9VIRU	NA	NA
UHGV-0140657_28	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0140657_28	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0140657_28	UniRef90	UniRef90_UPI001D0251E4	MBL fold metallo-hydrolase	NA
UHGV-0140657_28	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0140657_28	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0140657_28	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0140657_28	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0140657_29	UniRef90	UniRef90_G9YN41	DNA binding domain, excisionase family	NA
UHGV-0140657_29	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0140657_29	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0140657_29	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0140657_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0140657_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0140657_30	UniRef90	UniRef90_A0A174RD30	Single-stranded DNA-binding protein	NA
UHGV-0140657_30	eggNOG-mapper	411467.BACCAP_02389	Single-strand binding protein family	NA
UHGV-0140657_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0140657_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0140657_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0140657_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0140657_30	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0140657_31	PHROG	phrog_15768	NA	unknown function
UHGV-0140657_31	UniRef90	UniRef90_A0A1C6J8D5	NA	NA
UHGV-0140657_31	eggNOG-mapper	1123058.KB894219_gene165	COG NOG19076 non supervised orthologous group	NA
UHGV-0140657_31	Pfam	PF19808	NA	DUF6291
UHGV-0140657_31	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0140657_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0140657_31	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0140657_32	PHROG	phrog_9804	NA	unknown function
UHGV-0140657_32	UniRef90	UniRef90_UPI0018976F94	replicative helicase loader/inhibitor	NA
UHGV-0140657_32	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0140657_32	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0140657_32	Structural annotation	PF11417	NA	NA
UHGV-0140657_33	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0140657_33	UniRef90	UniRef90_A0A6A8VJ62	NA	NA
UHGV-0140657_33	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0140657_33	Pfam	PF06356	NA	DUF1064
UHGV-0140657_33	Structural annotation	PF06356	NA	NA
UHGV-0140657_35	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0140657_35	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0140657_35	UniRef90	UniRef90_A0A2Z5HJ92	Adenine-specific methyltransferase	NA
UHGV-0140657_35	eggNOG-mapper	1423758.BN55_09485	DNA methylase	NA
UHGV-0140657_35	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0140657_35	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0140657_35	COG	COG0863	DNA modification methylase	NA
UHGV-0140657_35	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0140657_38	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0140657_38	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-0140657_39	PHROG	phrog_25732	NA	unknown function
UHGV-0140657_40	Structural annotation	NF000937	NA	NA
UHGV-0140657_43	PHROG	phrog_25385	NA	unknown function
UHGV-0140657_43	eggNOG-mapper	476272.RUMHYD_03328	NA	NA
UHGV-0140657_44	PHROG	phrog_924	NA	unknown function
UHGV-0140657_44	UniRef90	UniRef90_U2BA60	NA	NA
UHGV-0140657_44	Pfam	PF04448	NA	DUF551
UHGV-0140657_44	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0140657_44	Structural annotation	NF041588	NA	NA
UHGV-0140657_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0140657_45	UniRef90	UniRef90_UPI001899C2C3	helix-turn-helix domain-containing protein	NA
UHGV-0140657_45	eggNOG-mapper	1378168.N510_02302	Transcriptional	NA
UHGV-0140657_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140657_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0140657_45	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0140657_46	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0140657_46	PHROG	phrog_4836	CII-like regulator	transcription regulation
UHGV-0140657_46	UniRef90	UniRef90_U2R0P8	DNA-binding helix-turn-helix protein	NA
UHGV-0140657_46	eggNOG-mapper	1226322.HMPREF1545_02890	Helix-turn-helix XRE-family like proteins	NA
UHGV-0140657_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140657_46	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0140657_48	UniRef90	UniRef90_UPI0018A8F249	helix-turn-helix domain containing protein	NA
UHGV-0140657_48	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0140657_48	Structural annotation	PF13542	NA	NA
UHGV-0140657_49	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0140657_49	PHROG	phrog_10250	NA	unknown function
UHGV-0140657_49	UniRef90	UniRef90_UPI0018A99FCF	PBSX family phage terminase large subunit	NA
UHGV-0140657_49	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0140657_49	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0140657_49	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0140657_49	COG	COG1783	Phage terminase large subunit	NA
UHGV-0140657_49	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0140657_50	PHROG	phrog_64	portal protein	head and packaging
UHGV-0140657_50	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0140657_50	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0140657_50	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0140657_50	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0140657_51	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0140657_51	UniRef90	UniRef90_A0A1C7FSE6	Phage_Mu_F domain-containing protein	NA
UHGV-0140657_51	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0140657_51	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0140657_51	COG	COG2369	NA	NA
UHGV-0140657_51	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0140657_52	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0140657_52	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-0140657_52	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0140657_52	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0140657_52	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0140657_52	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0140657_54	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0140657_54	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0140657_54	Structural annotation	PF06810	NA	NA
UHGV-0140657_55	PHROG	phrog_544	major head protein	head and packaging
UHGV-0140657_55	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0140657_55	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0140657_55	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0140657_56	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-0140657_58	PHROG	phrog_17977	NA	unknown function
UHGV-0140657_58	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0140657_58	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0140657_59	PHROG	phrog_1233	NA	unknown function
UHGV-0140657_59	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0140657_59	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0140657_60	PHROG	phrog_17405	head protein	head and packaging
UHGV-0140657_60	Structural annotation	PF11367	NA	NA
UHGV-0140657_61	PHROG	phrog_885	major tail protein	tail
UHGV-0140657_61	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0140657_61	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0140657_62	PHROG	phrog_18646	NA	unknown function
UHGV-0140657_64	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0140657_64	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0140657_64	COG	COG1511	NA	NA
UHGV-0140657_64	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0140657_65	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-0140657_65	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0140657_66	PHROG	phrog_13879	NA	unknown function
UHGV-0140657_66	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0140657_66	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0140657_68	PHROG	phrog_11157	NA	unknown function
UHGV-0140657_68	UniRef90	UniRef90_G9YSD2	Big_13 domain-containing protein	NA
UHGV-0140657_68	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-0140657_68	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0140657_68	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0140657_68	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0140657_68	Structural annotation	PF09136, PF13750, MF_04116, NF032891, COG2372	NA	NA
UHGV-0140657_70	eggNOG-mapper	742738.HMPREF9460_03965	NA	NA
UHGV-0140657_71	PHROG	phrog_2310	NA	unknown function
UHGV-0140657_73	eggNOG-mapper	742738.HMPREF9460_03967	NA	NA