UHGV-0140673

Genome information

Genome length 38,772 bps

CDS count 59

Completeness 99.74% (high-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140673
vOTU ID	vOTU-077853
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_421171
BioSample	SAMN05826989
Country	Russia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.74% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.48
Jumbo phage	No

Genome content
Genome length	38,772 bps
GC content	43.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	93.16%
Average CDS length	616.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140673_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0140673_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0140673_1	UniRef90	UniRef90_UPI00084915C6	tyrosine-type recombinase/integrase	NA
UHGV-0140673_1	eggNOG-mapper	411468.CLOSCI_00297	Belongs to the 'phage' integrase family	NA
UHGV-0140673_1	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0140673_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0140673_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0140673_1	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0140673_4	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0140673_4	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-0140673_4	UniRef90	UniRef90_A0A350RPP3	SPOR domain-containing protein	NA
UHGV-0140673_4	eggNOG-mapper	511680.BUTYVIB_00396	peptidase	NA
UHGV-0140673_4	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0140673_4	Pfam	PF05036	SPOR domain	SPOR
UHGV-0140673_4	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0140673_4	Structural annotation	PF01551, PF05036, MF_02022, NF040883, NF008641, COG0739	NA	NA
UHGV-0140673_5	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0140673_6	PHROG	phrog_937	hemolysin	other
UHGV-0140673_6	eggNOG-mapper	742740.HMPREF9474_03172	NA	NA
UHGV-0140673_7	PHROG	phrog_17196	kinase	other
UHGV-0140673_7	UniRef90	UniRef90_A0A3R6GQJ1	Peptidase S74 domain-containing protein	NA
UHGV-0140673_7	eggNOG-mapper	1235790.C805_00090	NA	NA
UHGV-0140673_7	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0140673_8	PHROG	phrog_18190	NA	unknown function
UHGV-0140673_8	UniRef90	UniRef90_R7BGL9	NA	NA
UHGV-0140673_8	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-0140673_8	Pfam	PF07902	gp58-like protein	Gp58
UHGV-0140673_8	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0140673_9	PHROG	phrog_1194	NA	unknown function
UHGV-0140673_9	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0140673_9	Pfam	PF20458	NA	DUF6711
UHGV-0140673_9	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0140673_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0140673_10	eggNOG-mapper	33035.JPJF01000043_gene1003	phage tail tape measure protein	NA
UHGV-0140673_10	COG	COG1511	NA	NA
UHGV-0140673_11	PHROG	phrog_706	NA	unknown function
UHGV-0140673_11	UniRef90	UniRef90_R5H1B0	Bacteriophage Gp15 protein	NA
UHGV-0140673_11	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0140673_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0140673_11	Structural annotation	PF06854	NA	NA
UHGV-0140673_12	PHROG	phrog_11299	NA	unknown function
UHGV-0140673_12	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-0140673_12	Structural annotation	PF10666	NA	NA
UHGV-0140673_13	PHROG	phrog_3099	NA	unknown function
UHGV-0140673_13	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0140673_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0140673_14	PHROG	phrog_3266	tail completion	connector
UHGV-0140673_14	UniRef90	UniRef90_A0A416DT59	Chloramphenicol resistance protein	NA
UHGV-0140673_14	eggNOG-mapper	573061.Clocel_3537	NA	NA
UHGV-0140673_14	Structural annotation	PF12691	NA	NA
UHGV-0140673_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0140673_15	UniRef90	UniRef90_UPI00067E9657	minor capsid protein	NA
UHGV-0140673_15	eggNOG-mapper	1235790.C805_00048	NA	NA
UHGV-0140673_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0140673_15	Structural annotation	PF11114	NA	NA
UHGV-0140673_16	PHROG	phrog_3366	NA	unknown function
UHGV-0140673_16	Pfam	PF20536	NA	DUF6751
UHGV-0140673_16	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0140673_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0140673_18	PHROG	phrog_212	major head protein	head and packaging
UHGV-0140673_18	UniRef90	UniRef90_A0A350VVC8	Phage capsid protein	NA
UHGV-0140673_18	eggNOG-mapper	318464.IO99_00580	NA	NA
UHGV-0140673_18	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0140673_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0140673_19	UniRef90	UniRef90_A0A173RNU4	Phage minor structural protein GP20	NA
UHGV-0140673_19	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0140673_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0140673_19	Structural annotation	PF06810	NA	NA
UHGV-0140673_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0140673_21	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0140673_21	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0140673_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0140673_21	COG	COG2369	NA	NA
UHGV-0140673_21	Structural annotation	PF06152	NA	NA
UHGV-0140673_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-0140673_22	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0140673_22	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-0140673_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0140673_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0140673_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0140673_23	UniRef90	UniRef90_A0A350VVC2	PBSX family phage terminase large subunit	NA
UHGV-0140673_23	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0140673_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0140673_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0140673_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0140673_23	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0140673_24	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0140673_24	UniRef90	UniRef90_UPI000AC737F1	helix-turn-helix domain containing protein	NA
UHGV-0140673_24	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0140673_24	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0140673_24	Structural annotation	PF07141	NA	NA
UHGV-0140673_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0140673_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0140673_26	UniRef90	UniRef90_A0A350VVC0	Single-stranded DNA-binding protein	NA
UHGV-0140673_26	eggNOG-mapper	679200.HMPREF9333_00481	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0140673_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0140673_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0140673_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0140673_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0140673_26	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0140673_27	eggNOG-mapper	411461.DORFOR_01156	NA	NA
UHGV-0140673_28	UniRef90	UniRef90_S0J792	Single-stranded DNA-binding protein	NA
UHGV-0140673_28	eggNOG-mapper	537007.BLAHAN_04317	NA	NA
UHGV-0140673_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0140673_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0140673_28	Structural annotation	PF00436, MF_00984, NF005242, COG2965	NA	NA
UHGV-0140673_30	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0140673_30	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0140673_31	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0140673_31	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0140673_32	PHROG	phrog_15077	NA	unknown function
UHGV-0140673_32	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-0140673_32	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0140673_32	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0140673_33	PHROG	phrog_8470	NA	unknown function
UHGV-0140673_33	UniRef90	UniRef90_UPI001D0E6B3F	PcfJ domain-containing protein	NA
UHGV-0140673_33	eggNOG-mapper	411902.CLOBOL_05697	PcfJ-like protein	NA
UHGV-0140673_33	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0140673_33	Structural annotation	PF14284	NA	NA
UHGV-0140673_34	PHROG	phrog_4433	NA	unknown function
UHGV-0140673_34	eggNOG-mapper	742733.HMPREF9469_00220	regulation of DNA-templated transcription, elongation	NA
UHGV-0140673_34	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0140673_34	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0140673_35	eggNOG-mapper	411902.CLOBOL_05699	NA	NA
UHGV-0140673_36	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0140673_36	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0140673_36	UniRef90	UniRef90_A0A350VVB3	RNase H type-1 domain-containing protein	NA
UHGV-0140673_36	eggNOG-mapper	351627.Csac_1903	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0140673_36	Pfam	PF00075	RNase H	RNase_H
UHGV-0140673_36	COG	COG0328	Ribonuclease HI	NA
UHGV-0140673_36	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0140673_37	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0140673_37	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-0140673_37	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0140673_39	PHROG	phrog_32437	NA	unknown function
UHGV-0140673_39	UniRef90	UniRef90_A0A350VVB0	SLT domain-containing protein	NA
UHGV-0140673_39	eggNOG-mapper	1462527.CCDM010000003_gene4142	Transglycosylase SLT domain	NA
UHGV-0140673_39	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0140673_39	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0140673_39	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-0140673_40	Pfam	PF20323	NA	DUF6618
UHGV-0140673_40	Structural annotation	PF20323	NA	NA
UHGV-0140673_48	UniRef90	UniRef90_R6WAU3	HTH cro/C1-type domain-containing protein	NA
UHGV-0140673_48	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-0140673_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140673_48	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0140673_51	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0140673_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0140673_51	UniRef90	UniRef90_A0A350VVA2	XRE family transcriptional regulator	NA
UHGV-0140673_51	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-0140673_51	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0140673_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0140673_51	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0140673_52	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0140673_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0140673_52	UniRef90	UniRef90_A0A350VVA1	XRE family transcriptional regulator	NA
UHGV-0140673_52	eggNOG-mapper	525254.HMPREF0072_0271	DNA-binding helix-turn-helix protein	NA
UHGV-0140673_52	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0140673_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0140673_52	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0140673_53	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0140673_53	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0140673_53	UniRef90	UniRef90_A0A351THF1	Toxin-antitoxin system, toxin component, HicA family protein	NA
UHGV-0140673_53	eggNOG-mapper	1123276.KB893268_gene4825	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0140673_53	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0140673_53	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0140673_53	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0140673_54	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0140673_54	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0140673_54	UniRef90	UniRef90_A0A416DTH1	HicB family protein	NA
UHGV-0140673_54	eggNOG-mapper	1235802.C823_03972	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0140673_54	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0140673_54	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0140673_54	Structural annotation	PF15919, TIGR04563, COG1598, COG4710	NA	NA
UHGV-0140673_55	eggNOG-mapper	411459.RUMOBE_01363	NA	NA
UHGV-0140673_56	PHROG	phrog_87	metallo-protease	other
UHGV-0140673_56	UniRef90	UniRef90_A0A350VV99	Peptidase_M78 domain-containing protein	NA
UHGV-0140673_56	eggNOG-mapper	397288.C806_00132	Zn peptidase	NA
UHGV-0140673_56	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0140673_56	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0140673_56	Structural annotation	PF06114	NA	NA
UHGV-0140673_57	PHROG	phrog_5467	NA	unknown function
UHGV-0140673_57	UniRef90	UniRef90_A0A350VV98	NA	NA
UHGV-0140673_57	eggNOG-mapper	1235802.C823_03128	NA	NA
UHGV-0140673_57	Pfam	PF10088	NA	DUF2326
UHGV-0140673_57	COG	COG5293	NA	NA
UHGV-0140673_57	Structural annotation	PF13166, MF_00449, TIGR03185, COG5293	NA	NA
UHGV-0140673_58	eggNOG-mapper	1235802.C823_03127	NA	NA
UHGV-0140673_58	Pfam	PF20293	ABC-three component (ABC-3C) system Middle Component 6	MC6
UHGV-0140673_59	eggNOG-mapper	1211814.CAPG01000036_gene1854	Nacht domain	NA
UHGV-0140673_59	Pfam	PF20275	C-terminal domain 10 of the ABC-three component (ABC-3C) systems	CTD10
UHGV-0140673_59	COG	COG5635	Predicted NTPase, NACHT family domain	NA