UHGV-0140748

Genome information

Genome length 15,378 bps

CDS count 20

Completeness 92.04% (high-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140748
vOTU ID	vOTU-064617
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_437351
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.04% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.12
Jumbo phage	No

Genome content
Genome length	15,378 bps
GC content	38.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	20
CDS density	92.65%
Average CDS length	715.80 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140748_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0140748_1	PHROG	phrog_435	endolysin	lysis
UHGV-0140748_1	UniRef90	UniRef90_A0A1Q6KI91	SPOR domain-containing protein	NA
UHGV-0140748_1	eggNOG-mapper	537007.BLAHAN_05253	Ami_3	NA
UHGV-0140748_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0140748_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0140748_1	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-0140748_4	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0140748_4	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0140748_4	UniRef90	UniRef90_A0A843GHP1	DNA-directed DNA polymerase	NA
UHGV-0140748_4	eggNOG-mapper	1162305.I3PV37_9CAUD	nucleotide binding	NA
UHGV-0140748_4	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0140748_4	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0140748_6	Structural annotation	PF08977	NA	NA
UHGV-0140748_8	Structural annotation	PF17548	NA	NA
UHGV-0140748_9	Structural annotation	PF10991, MF_04153, NF004512, COG0629	NA	NA
UHGV-0140748_10	PHROG	phrog_199	holin	lysis
UHGV-0140748_10	UniRef90	UniRef90_UPI001C109117	phage holin family protein	NA
UHGV-0140748_10	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-0140748_10	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0140748_10	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0140748_10	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0140748_11	PHROG	phrog_2150	terminase	head and packaging
UHGV-0140748_11	UniRef90	UniRef90_A0A843FU40	Phage DNA encapsidation protein	NA
UHGV-0140748_11	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0140748_11	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0140748_11	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0140748_12	PHROG	phrog_20388	endolysin	lysis
UHGV-0140748_12	UniRef90	UniRef90_A0A1C7GSU3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0140748_12	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0140748_12	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0140748_12	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0140748_12	Structural annotation	PF18013	NA	NA
UHGV-0140748_14	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0140748_14	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0140748_14	eggNOG-mapper	1309583.M4W8D1_9CAUD	viral capsid	NA
UHGV-0140748_14	Structural annotation	PF19821, PF07354, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0140748_15	PHROG	phrog_2248	tail protein	tail
UHGV-0140748_15	UniRef90	UniRef90_A0A843HU95	Caud_tail_N domain-containing protein	NA
UHGV-0140748_15	eggNOG-mapper	1309583.M4W9Q4_9CAUD	NA	NA
UHGV-0140748_15	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0140748_15	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0140748_15	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0140748_17	PHROG	phrog_2038	upper collar connector	connector
UHGV-0140748_17	UniRef90	UniRef90_Q37891	Portal protein	NA
UHGV-0140748_17	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0140748_17	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0140748_17	Structural annotation	PF05352, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0140748_18	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0140748_18	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0140748_19	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C