UHGV-0140779

Genome information

Genome length 38,573 bps

CDS count 62

Completeness 99.16% (high-quality)

geNomad score 0.9680

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140779
vOTU ID	vOTU-061625
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_442559
BioSample	SAMN05971652
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.16% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9680
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.38
Jumbo phage	No

Genome content
Genome length	38,573 bps
GC content	42.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	91.26%
Average CDS length	573.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140779_2	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0140779_2	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0140779_2	UniRef90	UniRef90_A0A3E2WVB0	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0140779_2	eggNOG-mapper	1232453.BAIF02000057_gene1120	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0140779_2	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0140779_2	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0140779_2	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0140779_3	PHROG	phrog_87	metallo-protease	other
UHGV-0140779_3	UniRef90	UniRef90_A0A373A9Y6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0140779_3	eggNOG-mapper	457412.RSAG_00798	Zn peptidase	NA
UHGV-0140779_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0140779_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0140779_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0140779_4	UniRef90	UniRef90_A0A414EGB5	NA	NA
UHGV-0140779_4	eggNOG-mapper	657322.FPR_11180	NA	NA
UHGV-0140779_4	Pfam	PF13711	NA	DUF4160
UHGV-0140779_5	eggNOG-mapper	457412.RSAG_01053	NA	NA
UHGV-0140779_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0140779_6	UniRef90	UniRef90_A0A395YGB9	XRE family transcriptional regulator	NA
UHGV-0140779_6	eggNOG-mapper	1235798.C817_04757	NA	NA
UHGV-0140779_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140779_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0140779_6	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0140779_7	UniRef90	UniRef90_UPI0016510692	XRE family transcriptional regulator	NA
UHGV-0140779_7	eggNOG-mapper	1423807.BACO01000085_gene2466	NA	NA
UHGV-0140779_7	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0140779_11	PHROG	phrog_2232	NA	unknown function
UHGV-0140779_11	UniRef90	UniRef90_A0A373A8J6	NA	NA
UHGV-0140779_11	eggNOG-mapper	633697.EubceDRAFT1_1462	NA	NA
UHGV-0140779_11	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0140779_11	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0140779_12	UniRef90	UniRef90_UPI001D0976C2	actin family protein	NA
UHGV-0140779_17	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0140779_17	eggNOG-mapper	411459.RUMOBE_00953	NA	NA
UHGV-0140779_17	Structural annotation	PF01446	NA	NA
UHGV-0140779_18	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0140779_18	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0140779_18	UniRef90	UniRef90_A0A1C5RPI3	Ribonuclease H	NA
UHGV-0140779_18	eggNOG-mapper	1408418.JNJH01000020_gene931	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0140779_18	COG	COG0328	Ribonuclease HI	NA
UHGV-0140779_18	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0140779_19	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0140779_20	PHROG	phrog_4433	NA	unknown function
UHGV-0140779_20	eggNOG-mapper	411902.CLOBOL_05698	regulation of DNA-templated transcription, elongation	NA
UHGV-0140779_20	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0140779_20	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0140779_21	PHROG	phrog_8470	NA	unknown function
UHGV-0140779_21	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0140779_22	PHROG	phrog_8470	NA	unknown function
UHGV-0140779_22	UniRef90	UniRef90_UPI001C01E393	PcfJ domain-containing protein	NA
UHGV-0140779_22	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0140779_22	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0140779_23	PHROG	phrog_15077	NA	unknown function
UHGV-0140779_23	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0140779_23	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0140779_23	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0140779_25	PHROG	phrog_10714	NA	unknown function
UHGV-0140779_25	UniRef90	UniRef90_R5R2P7	DNA polymerase II large subunit	NA
UHGV-0140779_25	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0140779_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0140779_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0140779_26	UniRef90	UniRef90_A0A1C5RPL4	Single-stranded DNA-binding protein	NA
UHGV-0140779_26	eggNOG-mapper	397290.C810_04698	Single-strand binding protein family	NA
UHGV-0140779_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0140779_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0140779_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0140779_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0140779_26	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0140779_28	PHROG	phrog_7566	NA	unknown function
UHGV-0140779_28	eggNOG-mapper	97139.C824_05985	NA	NA
UHGV-0140779_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0140779_30	UniRef90	UniRef90_A0A3A6HTW3	Sigma70_r4 domain-containing protein	NA
UHGV-0140779_30	eggNOG-mapper	411460.RUMTOR_02080	NA	NA
UHGV-0140779_30	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0140779_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0140779_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0140779_31	UniRef90	UniRef90_A0A373AA74	Terminase small subunit	NA
UHGV-0140779_31	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0140779_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0140779_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0140779_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0140779_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0140779_32	PHROG	phrog_10250	NA	unknown function
UHGV-0140779_32	UniRef90	UniRef90_A0A373A8H5	Terminase	NA
UHGV-0140779_32	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0140779_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0140779_32	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0140779_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0140779_33	UniRef90	UniRef90_A0A1C5RQA3	Phage portal protein, putative, A118 family	NA
UHGV-0140779_33	eggNOG-mapper	1122918.KB907248_gene4503	NA	NA
UHGV-0140779_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0140779_34	PHROG	phrog_25639	NA	unknown function
UHGV-0140779_34	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0140779_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0140779_35	UniRef90	UniRef90_A0A373A8K2	Minor capsid protein	NA
UHGV-0140779_35	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0140779_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0140779_35	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0140779_36	Structural annotation	PF21279, NF040942	NA	NA
UHGV-0140779_37	PHROG	phrog_34731	NA	unknown function
UHGV-0140779_37	eggNOG-mapper	365659.smi_0098	Cysteine-rich CPCC	NA
UHGV-0140779_37	Structural annotation	PF02699, MF_00369, TIGR00739, COG1862	NA	NA
UHGV-0140779_40	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0140779_40	UniRef90	UniRef90_UPI001D02A5C9	phage scaffolding protein	NA
UHGV-0140779_40	eggNOG-mapper	1262449.CP6013_3198	Phage minor structural protein GP20	NA
UHGV-0140779_40	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0140779_40	Structural annotation	PF06810	NA	NA
UHGV-0140779_41	PHROG	phrog_212	major head protein	head and packaging
UHGV-0140779_41	UniRef90	UniRef90_A0A373AA42	Phage capsid protein	NA
UHGV-0140779_41	eggNOG-mapper	1151292.QEW_2433	NA	NA
UHGV-0140779_41	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0140779_42	PHROG	phrog_15682	NA	unknown function
UHGV-0140779_42	UniRef90	UniRef90_A0A841L8S8	Rho_N domain-containing protein	NA
UHGV-0140779_42	eggNOG-mapper	1395587.P364_0122060	NA	NA
UHGV-0140779_43	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0140779_43	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0140779_44	PHROG	phrog_8710	NA	unknown function
UHGV-0140779_44	eggNOG-mapper	1282664.H354_06676	NA	NA
UHGV-0140779_45	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0140779_45	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0140779_46	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0140779_46	UniRef90	UniRef90_UPI001C0EB705	minor capsid protein	NA
UHGV-0140779_46	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0140779_46	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0140779_46	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0140779_47	PHROG	phrog_820	major tail protein	tail
UHGV-0140779_47	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0140779_47	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0140779_48	PHROG	phrog_8300	NA	unknown function
UHGV-0140779_48	eggNOG-mapper	1282664.H354_06701	NA	NA
UHGV-0140779_48	Structural annotation	PF06854	NA	NA
UHGV-0140779_49	PHROG	phrog_8355	NA	unknown function
UHGV-0140779_49	UniRef90	UniRef90_A0A2Y9BGF3	Bacteriophage Gp15 protein	NA
UHGV-0140779_49	eggNOG-mapper	1280692.AUJL01000027_gene2152	NA	NA
UHGV-0140779_49	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0140779_49	Structural annotation	PF06854	NA	NA
UHGV-0140779_50	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0140779_50	UniRef90	UniRef90_A0A1C5RRP4	Phage-related protein	NA
UHGV-0140779_50	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0140779_50	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0140779_50	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0140779_51	PHROG	phrog_1194	NA	unknown function
UHGV-0140779_51	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0140779_51	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0140779_52	PHROG	phrog_6616	tail protein	tail
UHGV-0140779_52	UniRef90	UniRef90_A0A415L5E9	Peptidase S74 domain-containing protein	NA
UHGV-0140779_52	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0140779_52	COG	COG4926	Phage-related protein	NA
UHGV-0140779_52	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0140779_53	PHROG	phrog_18444	NA	unknown function
UHGV-0140779_53	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-0140779_54	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0140779_54	PHROG	phrog_11157	NA	unknown function
UHGV-0140779_54	UniRef90	UniRef90_A0A373A9V2	Big_13 domain-containing protein	NA
UHGV-0140779_54	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-0140779_54	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0140779_54	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0140779_54	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0140779_54	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0140779_55	PHROG	phrog_32322	NA	unknown function
UHGV-0140779_55	UniRef90	UniRef90_A0A1C5RRT2	Ig-like_bact domain-containing protein	NA
UHGV-0140779_55	Pfam	PF13754	NA	Big_3_4
UHGV-0140779_55	Structural annotation	PF13754	NA	NA
UHGV-0140779_56	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0140779_59	PHROG	phrog_199	holin	lysis
UHGV-0140779_59	UniRef90	UniRef90_A0A1C5RRX6	Phage-related holin (Lysis protein)	NA
UHGV-0140779_59	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-0140779_59	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0140779_59	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0140779_59	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0140779_59	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0140779_61	PHROG	phrog_6745	endolysin	lysis
UHGV-0140779_61	UniRef90	UniRef90_A0A1C5RSJ3	Spore cortex-lytic enzyme	NA
UHGV-0140779_61	eggNOG-mapper	411470.RUMGNA_03118	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0140779_61	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0140779_61	Pfam	PF05257	CHAP domain	CHAP
UHGV-0140779_61	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0140779_61	COG	COG1388	LysM repeat	NA