UHGV-0140801

Genome information

Genome length 40,940 bps

CDS count 66

Completeness 100.00% (complete)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140801
vOTU ID	vOTU-046044
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_413145
BioSample	SAMN05414991
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.4
Jumbo phage	No

Genome content
Genome length	40,940 bps
GC content	48.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	89.88%
Average CDS length	563.82 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140801_1	PHROG	phrog_15077	NA	unknown function
UHGV-0140801_1	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0140801_1	eggNOG-mapper	411902.CLOBOL_05696	NA	NA
UHGV-0140801_2	PHROG	phrog_8470	NA	unknown function
UHGV-0140801_2	UniRef90	UniRef90_A0A1H3WNI3	PcfJ-like protein	NA
UHGV-0140801_2	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-0140801_2	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0140801_2	Structural annotation	PF14284	NA	NA
UHGV-0140801_3	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0140801_4	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0140801_5	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0140801_5	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0140801_5	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0140801_5	Structural annotation	PF11726	NA	NA
UHGV-0140801_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0140801_14	UniRef90	UniRef90_A0A7X2TQC3	Helix-turn-helix transcriptional regulator	NA
UHGV-0140801_14	eggNOG-mapper	864563.HMPREF9166_0598	DNA-binding helix-turn-helix protein	NA
UHGV-0140801_14	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0140801_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0140801_14	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0140801_15	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0140801_15	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0140801_15	UniRef90	UniRef90_A0A413P7Z4	XRE family transcriptional regulator	NA
UHGV-0140801_15	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0140801_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140801_15	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0140801_15	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0140801_16	eggNOG-mapper	1286171.EAL2_c05530	NA	NA
UHGV-0140801_17	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0140801_17	PHROG	phrog_8036	NA	unknown function
UHGV-0140801_17	UniRef90	UniRef90_UPI001CBFE9E8	DNA damage-inducible protein D	NA
UHGV-0140801_17	eggNOG-mapper	1514668.JOOA01000001_gene65	BRO family, N-terminal domain	NA
UHGV-0140801_17	AcrCatalog	cluster_17589	NA	NA
UHGV-0140801_17	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0140801_17	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0140801_17	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0140801_17	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0140801_17	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0140801_18	KOfam	K14059	int; integrase	NA
UHGV-0140801_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0140801_18	UniRef90	UniRef90_E6LK61	Site-specific recombinase, phage integrase family	NA
UHGV-0140801_18	eggNOG-mapper	887325.HMPREF0381_0346	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0140801_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0140801_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0140801_18	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0140801_19	UniRef90	UniRef90_UPI00130E6CB1	chemotaxis protein	NA
UHGV-0140801_19	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0140801_19	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0140801_21	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0140801_21	UniRef90	UniRef90_UPI001C393AC4	NA	NA
UHGV-0140801_21	eggNOG-mapper	431943.CKL_1924	NA	NA
UHGV-0140801_21	Pfam	PF10097	NA	DUF2335
UHGV-0140801_21	COG	COG5346	NA	NA
UHGV-0140801_21	Structural annotation	PF10097, COG5346	NA	NA
UHGV-0140801_24	PHROG	phrog_14030	NA	unknown function
UHGV-0140801_24	UniRef90	UniRef90_A0A7U9NC58	SH3b domain-containing protein	NA
UHGV-0140801_24	eggNOG-mapper	411468.CLOSCI_01513	NA	NA
UHGV-0140801_24	Structural annotation	PF18342, NF041850, COG3807	NA	NA
UHGV-0140801_25	PHROG	phrog_6918	holin	lysis
UHGV-0140801_25	UniRef90	UniRef90_R7N9M5	LL-H family phage holin	NA
UHGV-0140801_25	eggNOG-mapper	1235792.C808_00574	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0140801_25	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0140801_27	PHROG	phrog_4105	NA	unknown function
UHGV-0140801_27	eggNOG-mapper	1321782.HMPREF1986_02281	NA	NA
UHGV-0140801_29	PHROG	phrog_24103	NA	unknown function
UHGV-0140801_29	eggNOG-mapper	742735.HMPREF9467_00719	NA	NA
UHGV-0140801_34	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0140801_35	PHROG	phrog_521	tail protein	tail
UHGV-0140801_35	UniRef90	UniRef90_A0A1E3U7J0	Phage portal protein	NA
UHGV-0140801_35	eggNOG-mapper	931276.Cspa_c07900	NA	NA
UHGV-0140801_35	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0140801_35	COG	COG3778	NA	NA
UHGV-0140801_35	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0140801_36	PHROG	phrog_18608	NA	unknown function
UHGV-0140801_36	UniRef90	UniRef90_A0A2N0K390	Phosphoglucomutase	NA
UHGV-0140801_36	eggNOG-mapper	1294142.CINTURNW_0307	NA	NA
UHGV-0140801_37	PHROG	phrog_6	baseplate protein	tail
UHGV-0140801_37	UniRef90	UniRef90_UPI000C864395	baseplate J/gp47 family protein	NA
UHGV-0140801_37	eggNOG-mapper	1536775.H70737_27185	Baseplate J protein	NA
UHGV-0140801_37	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0140801_37	COG	COG3299	NA	NA
UHGV-0140801_37	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0140801_38	PHROG	phrog_120	baseplate protein	tail
UHGV-0140801_38	UniRef90	UniRef90_A0A6L9HKZ0	NA	NA
UHGV-0140801_38	eggNOG-mapper	608534.GCWU000341_02278	NA	NA
UHGV-0140801_38	Pfam	PF10934	NA	DUF2634
UHGV-0140801_38	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0140801_38	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0140801_39	PHROG	phrog_579	NA	unknown function
UHGV-0140801_39	Pfam	PF10844	NA	DUF2577
UHGV-0140801_40	PHROG	phrog_400	tail protein	tail
UHGV-0140801_40	UniRef90	UniRef90_A0A316T9M3	Hydrolase	NA
UHGV-0140801_40	eggNOG-mapper	1029718.SFBM_0133	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0140801_40	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0140801_40	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0140801_41	PHROG	phrog_380	endolysin	lysis
UHGV-0140801_41	UniRef90	UniRef90_A0A173XS95	LysM domain/BON superfamily protein	NA
UHGV-0140801_41	eggNOG-mapper	742740.HMPREF9474_02343	Lysin motif	NA
UHGV-0140801_41	Pfam	PF01476	LysM domain	LysM
UHGV-0140801_41	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0140801_41	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0140801_42	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0140801_42	UniRef90	UniRef90_D4CPJ0	Tape measure domain protein	NA
UHGV-0140801_42	eggNOG-mapper	608534.GCWU000341_02282	tape measure	NA
UHGV-0140801_42	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0140801_42	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0140801_42	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0140801_42	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0140801_43	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0140801_43	UniRef90	UniRef90_H2J902	Phage XkdN-like protein	NA
UHGV-0140801_43	eggNOG-mapper	755731.Clo1100_3794	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0140801_43	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0140801_43	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0140801_44	PHROG	phrog_365	tail protein	tail
UHGV-0140801_44	UniRef90	UniRef90_A0A7V6VV75	Phage tail tube protein	NA
UHGV-0140801_44	eggNOG-mapper	1235793.C809_01941	Phage tail tube protein	NA
UHGV-0140801_44	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0140801_44	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0140801_45	PHROG	phrog_279	tail sheath	tail
UHGV-0140801_45	UniRef90	UniRef90_A0A415TAL3	Phage tail protein	NA
UHGV-0140801_45	eggNOG-mapper	742740.HMPREF9474_02347	Phage tail sheath C-terminal domain	NA
UHGV-0140801_45	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0140801_45	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0140801_45	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0140801_45	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0140801_46	PHROG	phrog_966	NA	unknown function
UHGV-0140801_47	PHROG	phrog_525	NA	unknown function
UHGV-0140801_47	Pfam	PF20765	NA	DUF6838
UHGV-0140801_47	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0140801_48	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0140801_48	UniRef90	UniRef90_A0A844DU61	HK97 gp10 family phage protein	NA
UHGV-0140801_48	eggNOG-mapper	642492.Clole_2753	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0140801_48	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0140801_48	Structural annotation	PF04883, COG5005	NA	NA
UHGV-0140801_49	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0140801_49	UniRef90	UniRef90_R6N7E7	NA	NA
UHGV-0140801_49	eggNOG-mapper	445335.CBN_1380	Phage gp6-like head-tail connector protein	NA
UHGV-0140801_49	Structural annotation	PF05135	NA	NA
UHGV-0140801_50	PHROG	phrog_247	major head protein	head and packaging
UHGV-0140801_50	UniRef90	UniRef90_A0A6L9HG48	Phage coat protein	NA
UHGV-0140801_50	eggNOG-mapper	1095750.HMPREF9970_0286	NA	NA
UHGV-0140801_50	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0140801_50	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0140801_50	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0140801_51	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0140801_51	UniRef90	UniRef90_UPI00189B74D8	phage scaffolding protein	NA
UHGV-0140801_51	eggNOG-mapper	742740.HMPREF9474_02354	Phage minor structural protein GP20	NA
UHGV-0140801_51	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0140801_51	Structural annotation	PF06810	NA	NA
UHGV-0140801_52	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0140801_52	UniRef90	UniRef90_A0A173S657	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-0140801_52	eggNOG-mapper	642492.Clole_2763	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0140801_52	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0140801_52	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0140801_52	COG	COG2369	NA	NA
UHGV-0140801_52	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0140801_53	PHROG	phrog_64	portal protein	head and packaging
UHGV-0140801_53	UniRef90	UniRef90_UPI001D05D7B4	phage portal protein	NA
UHGV-0140801_53	eggNOG-mapper	742740.HMPREF9474_02357	Phage portal protein, SPP1 family	NA
UHGV-0140801_53	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0140801_53	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0140801_54	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0140801_54	UniRef90	UniRef90_UPI001C397E52	Terminase family protein	NA
UHGV-0140801_54	eggNOG-mapper	1232453.BAIF02000011_gene3352	NA	NA
UHGV-0140801_54	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0140801_55	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0140801_55	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0140801_55	UniRef90	UniRef90_A0A2N5PI15	Terminase small subunit	NA
UHGV-0140801_55	eggNOG-mapper	1235792.C808_05330	Terminase small subunit	NA
UHGV-0140801_55	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0140801_55	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0140801_55	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0140801_56	PHROG	phrog_13890	NA	unknown function
UHGV-0140801_56	UniRef90	UniRef90_UPI001C117B9F	Arc family DNA-binding protein	NA
UHGV-0140801_56	eggNOG-mapper	1235790.C805_00066	NA	NA
UHGV-0140801_56	Structural annotation	PF03869, NF010256	NA	NA
UHGV-0140801_58	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0140801_58	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0140801_58	UniRef90	UniRef90_A0A851IBG4	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0140801_58	eggNOG-mapper	352165.HMPREF7215_2777	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0140801_58	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0140801_58	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0140801_58	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0140801_59	PHROG	phrog_11237	NA	unknown function
UHGV-0140801_59	eggNOG-mapper	411461.DORFOR_01161	NA	NA
UHGV-0140801_60	PHROG	phrog_6568	NA	unknown function
UHGV-0140801_60	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0140801_61	eggNOG-mapper	1031288.AXAA01000044_gene1977	NA	NA
UHGV-0140801_62	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0140801_62	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0140801_62	UniRef90	UniRef90_R5CH32	Single-stranded DNA-binding protein	NA
UHGV-0140801_62	eggNOG-mapper	1280685.AUKC01000081_gene1299	Single-strand binding protein family	NA
UHGV-0140801_62	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0140801_62	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0140801_62	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0140801_62	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0140801_62	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0140801_64	eggNOG-mapper	742733.HMPREF9469_01847	NA	NA
UHGV-0140801_65	PHROG	phrog_24368	NA	unknown function