UHGV-0140896

Genome information

Genome length 31,360 bps

CDS count 54

Completeness 74.62% (medium-quality)

geNomad score 0.9832

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140896
vOTU ID	vOTU-040386
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_400089
BioSample	SAMN05194718
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9832
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.8
Jumbo phage	No

Genome content
Genome length	31,360 bps
GC content	53.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	93.31%
Average CDS length	546.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140896_2	Structural annotation	PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0140896_3	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0140896_3	UniRef90	UniRef90_UPI001C0170D2	NA	NA
UHGV-0140896_3	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0140896_3	Pfam	PF06356	NA	DUF1064
UHGV-0140896_3	Structural annotation	PF06356	NA	NA
UHGV-0140896_5	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0140896_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0140896_5	UniRef90	UniRef90_A0A7X6YBU5	Helix-turn-helix transcriptional regulator	NA
UHGV-0140896_5	eggNOG-mapper	246194.CHY_0550	transcriptional regulator, XRE family	NA
UHGV-0140896_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0140896_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0140896_5	Structural annotation	PF01381, PF13744, NF041951, COG3655, COG2944	NA	NA
UHGV-0140896_6	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0140896_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140896_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0140896_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0140896_8	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0140896_8	UniRef90	UniRef90_UPI000F065B6D	adenine methyltransferase	NA
UHGV-0140896_8	eggNOG-mapper	1450694.BTS2_0497	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0140896_8	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0140896_8	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0140896_8	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0140896_9	PHROG	phrog_27610	NA	unknown function
UHGV-0140896_10	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0140896_10	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0140896_12	PHROG	phrog_38832	NA	unknown function
UHGV-0140896_12	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0140896_13	PHROG	phrog_22543	NA	unknown function
UHGV-0140896_13	UniRef90	UniRef90_UPI001F2DACFB	zinc ribbon domain-containing protein	NA
UHGV-0140896_14	eggNOG-mapper	552398.HMPREF0866_03131	NA	NA
UHGV-0140896_16	PHROG	phrog_236	nucleotide kinase	other
UHGV-0140896_16	UniRef90	UniRef90_UPI001CA83796	NA	NA
UHGV-0140896_16	eggNOG-mapper	1033743.CAES01000020_gene3148	NA	NA
UHGV-0140896_16	Pfam	PF11753	NA	DUF3310
UHGV-0140896_17	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0140896_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0140896_17	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0140896_17	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0140896_17	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0140896_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0140896_17	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0140896_18	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0140896_18	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0140896_18	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-0140896_18	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0140896_18	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0140896_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0140896_18	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0140896_18	COG	COG0863	DNA modification methylase	NA
UHGV-0140896_18	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0140896_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0140896_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0140896_20	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0140896_20	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0140896_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0140896_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0140896_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0140896_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0140896_20	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0140896_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0140896_21	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0140896_21	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0140896_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0140896_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0140896_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0140896_22	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0140896_22	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0140896_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0140896_22	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0140896_22	COG	COG2369	NA	NA
UHGV-0140896_22	Structural annotation	PF06152	NA	NA
UHGV-0140896_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0140896_23	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0140896_23	eggNOG-mapper	1423734.JCM14202_3058	Phage minor structural protein GP20	NA
UHGV-0140896_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0140896_23	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0140896_24	PHROG	phrog_212	major head protein	head and packaging
UHGV-0140896_24	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-0140896_24	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0140896_24	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0140896_25	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0140896_25	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0140896_26	PHROG	phrog_3366	NA	unknown function
UHGV-0140896_26	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0140896_26	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0140896_27	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0140896_27	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0140896_27	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0140896_27	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0140896_27	Structural annotation	PF11114	NA	NA
UHGV-0140896_28	PHROG	phrog_3266	tail completion	connector
UHGV-0140896_28	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0140896_28	Structural annotation	PF12691	NA	NA
UHGV-0140896_29	PHROG	phrog_3099	NA	unknown function
UHGV-0140896_29	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0140896_29	Structural annotation	TIGR02126	NA	NA
UHGV-0140896_30	PHROG	phrog_11299	NA	unknown function
UHGV-0140896_30	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0140896_30	Structural annotation	PF10666	NA	NA
UHGV-0140896_31	PHROG	phrog_706	NA	unknown function
UHGV-0140896_31	UniRef90	UniRef90_UPI001D069FB9	Gp15 family bacteriophage protein	NA
UHGV-0140896_31	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0140896_31	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0140896_31	Structural annotation	PF06854	NA	NA
UHGV-0140896_32	PHROG	phrog_17658	NA	unknown function
UHGV-0140896_32	UniRef90	UniRef90_A0A316PG91	zinc_ribbon_2 domain-containing protein	NA
UHGV-0140896_32	eggNOG-mapper	768710.DesyoDRAFT_1122	NA	NA
UHGV-0140896_32	Structural annotation	PF18116, COG3402	NA	NA
UHGV-0140896_33	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0140896_33	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0140896_33	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0140896_33	COG	COG1511	NA	NA
UHGV-0140896_33	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0140896_34	PHROG	phrog_1194	NA	unknown function
UHGV-0140896_34	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-0140896_34	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0140896_35	PHROG	phrog_32308	NA	unknown function
UHGV-0140896_35	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0140896_35	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0140896_35	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0140896_36	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0140896_36	Structural annotation	PF14594	NA	NA
UHGV-0140896_37	Structural annotation	PF20942, NF041894, COG5456	NA	NA
UHGV-0140896_39	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0140896_39	PHROG	phrog_21962	tail protein	tail
UHGV-0140896_39	UniRef90	UniRef90_A0A858MRS5	Putative tail fiber protein	NA
UHGV-0140896_39	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0140896_39	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0140896_39	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0140896_41	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0140896_41	UniRef90	UniRef90_A0A3D4D8F0	NA	NA
UHGV-0140896_41	eggNOG-mapper	1121334.KB911071_gene1970	NA	NA
UHGV-0140896_41	Pfam	PF19789	NA	DUF6273
UHGV-0140896_41	Structural annotation	PF19789	NA	NA
UHGV-0140896_42	PHROG	phrog_27545	NA	unknown function
UHGV-0140896_42	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0140896_42	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0140896_42	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0140896_42	Structural annotation	PF16170	NA	NA
UHGV-0140896_43	PHROG	phrog_937	hemolysin	other
UHGV-0140896_43	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0140896_46	PHROG	phrog_13256	NA	unknown function
UHGV-0140896_46	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-0140896_47	PHROG	phrog_21825	endolysin	lysis
UHGV-0140896_47	UniRef90	UniRef90_R5SN87	Peptidase C51 domain-containing protein	NA
UHGV-0140896_47	eggNOG-mapper	1007096.BAGW01000022_gene2648	CHAP domain	NA
UHGV-0140896_47	Pfam	PF05257	CHAP domain	CHAP
UHGV-0140896_47	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0140896_47	Structural annotation	TIGR02594	NA	NA
UHGV-0140896_50	PHROG	phrog_22984	NA	unknown function
UHGV-0140896_51	PHROG	phrog_16490	NA	unknown function
UHGV-0140896_52	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0140896_53	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-0140896_54	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA