UHGV-0140898

Genome information

Genome length 33,537 bps

CDS count 50

Completeness 96.27% (high-quality)

geNomad score 0.9712

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140898
vOTU ID	vOTU-070515
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_400086
BioSample	SAMN05194718
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.27% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9712
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.57
Jumbo phage	No

Genome content
Genome length	33,537 bps
GC content	54.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.37%
Average CDS length	617.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140898_1	PHROG	phrog_13589	NA	unknown function
UHGV-0140898_1	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0140898_2	PHROG	phrog_31538	NA	unknown function
UHGV-0140898_3	PHROG	phrog_15594	NA	unknown function
UHGV-0140898_3	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0140898_3	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0140898_4	PHROG	phrog_6616	tail protein	tail
UHGV-0140898_4	Structural annotation	PF13550, PF09931, NF033848, COG3500	NA	NA
UHGV-0140898_5	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0140898_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0140898_6	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0140898_6	eggNOG-mapper	1449050.JNLE01000003_gene3881	domain protein	NA
UHGV-0140898_6	COG	COG1511	NA	NA
UHGV-0140898_7	PHROG	phrog_706	NA	unknown function
UHGV-0140898_7	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0140898_7	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0140898_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0140898_7	Structural annotation	PF06854	NA	NA
UHGV-0140898_8	PHROG	phrog_11299	NA	unknown function
UHGV-0140898_8	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0140898_8	Structural annotation	PF10666	NA	NA
UHGV-0140898_9	PHROG	phrog_3099	NA	unknown function
UHGV-0140898_9	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0140898_9	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0140898_10	PHROG	phrog_3266	tail completion	connector
UHGV-0140898_10	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0140898_10	Structural annotation	PF12691	NA	NA
UHGV-0140898_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0140898_11	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-0140898_11	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0140898_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0140898_11	Structural annotation	PF11114	NA	NA
UHGV-0140898_12	PHROG	phrog_3366	NA	unknown function
UHGV-0140898_12	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0140898_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0140898_13	eggNOG-mapper	33035.JPJF01000106_gene3131	NA	NA
UHGV-0140898_14	PHROG	phrog_267	major head protein	head and packaging
UHGV-0140898_14	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-0140898_14	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0140898_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0140898_15	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0140898_15	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0140898_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0140898_15	Structural annotation	PF06810	NA	NA
UHGV-0140898_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0140898_16	UniRef90	UniRef90_A0A355KVT5	Phage capsid protein (Fragment)	NA
UHGV-0140898_16	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0140898_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0140898_16	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-0140898_16	COG	COG2369	NA	NA
UHGV-0140898_16	Structural annotation	PF06152, PF18812	NA	NA
UHGV-0140898_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0140898_17	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0140898_17	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0140898_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0140898_18	PHROG	phrog_1233	NA	unknown function
UHGV-0140898_18	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-0140898_18	Structural annotation	PF13058	NA	NA
UHGV-0140898_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0140898_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0140898_19	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0140898_19	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0140898_19	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0140898_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0140898_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0140898_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0140898_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0140898_19	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0140898_20	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0140898_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0140898_21	eggNOG-mapper	994573.T472_0208800	NA	NA
UHGV-0140898_21	Pfam	PF07374	NA	DUF1492
UHGV-0140898_21	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0140898_23	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0140898_23	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0140898_23	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-0140898_23	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0140898_24	PHROG	phrog_5781	NA	unknown function
UHGV-0140898_24	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0140898_24	Pfam	PF14359	NA	DUF4406
UHGV-0140898_24	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0140898_24	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0140898_25	PHROG	phrog_1029	NA	unknown function
UHGV-0140898_25	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-0140898_25	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0140898_26	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0140898_26	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0140898_26	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0140898_27	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0140898_27	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0140898_27	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0140898_27	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0140898_27	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0140898_27	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0140898_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0140898_27	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0140898_28	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-0140898_29	KOfam	K03700	recU; recombination protein U	NA
UHGV-0140898_29	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0140898_29	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-0140898_29	eggNOG-mapper	1203606.HMPREF1526_01884	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0140898_29	Pfam	PF03838	Recombination protein U	RecU
UHGV-0140898_29	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0140898_29	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0140898_30	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0140898_30	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-0140898_30	Structural annotation	PF21578	NA	NA
UHGV-0140898_33	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0140898_33	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0140898_33	UniRef90	UniRef90_UPI000839D597	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0140898_33	eggNOG-mapper	373903.Hore_06360	TIGRFAM looped-hinge helix DNA binding domain, AbrB family	NA
UHGV-0140898_33	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0140898_33	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0140898_33	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0140898_33	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0140898_35	PHROG	phrog_5663	NA	unknown function
UHGV-0140898_35	UniRef90	UniRef90_UPI001EDDD6D5	NA	NA
UHGV-0140898_35	eggNOG-mapper	390235.PputW619_1358	NA	NA
UHGV-0140898_35	Pfam	PF10386	NA	DUF2441
UHGV-0140898_35	Structural annotation	PF10386	NA	NA
UHGV-0140898_38	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0140898_38	UniRef90	UniRef90_UPI0013ECC13D	helix-turn-helix domain-containing protein	NA
UHGV-0140898_38	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0140898_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140898_38	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0140898_38	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0140898_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0140898_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0140898_39	UniRef90	UniRef90_UPI000E31F980	helix-turn-helix domain-containing protein	NA
UHGV-0140898_39	eggNOG-mapper	1125712.HMPREF1316_2394	Peptidase S24-like	NA
UHGV-0140898_39	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0140898_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140898_39	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0140898_39	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0140898_40	PHROG	phrog_1914	NA	unknown function
UHGV-0140898_40	UniRef90	UniRef90_R6DVV5	Predicted Zn peptidase	NA
UHGV-0140898_40	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0140898_40	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0140898_40	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0140898_40	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0140898_41	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-0140898_41	UniRef90	UniRef90_UPI001EDE047F	phage minor capsid protein	NA
UHGV-0140898_41	eggNOG-mapper	679192.HMPREF9013_1325	NA	NA
UHGV-0140898_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0140898_42	Structural annotation	PF21227	NA	NA
UHGV-0140898_43	Structural annotation	PF05973, TIGR02683, COG4683	NA	NA
UHGV-0140898_44	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0140898_44	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0140898_44	UniRef90	UniRef90_UPI00051ABD2F	helix-turn-helix domain-containing protein	NA
UHGV-0140898_44	eggNOG-mapper	1280688.AUJB01000009_gene1936	Helix-turn-helix XRE-family like proteins	NA
UHGV-0140898_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140898_44	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0140898_45	Structural annotation	PF11950, NF008958	NA	NA
UHGV-0140898_46	PHROG	phrog_5978	NA	unknown function
UHGV-0140898_46	UniRef90	UniRef90_A0A372UZA0	Fic family protein	NA
UHGV-0140898_46	eggNOG-mapper	936375.HMPREF1152_1541	Filamentation induced by cAMP protein fic	NA
UHGV-0140898_46	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0140898_46	COG	COG3177	Fic family protein	NA
UHGV-0140898_46	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-0140898_47	KOfam	K14059	int; integrase	NA
UHGV-0140898_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0140898_47	UniRef90	UniRef90_UPI001958A27A	site-specific integrase	NA
UHGV-0140898_47	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0140898_47	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0140898_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0140898_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0140898_47	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0140898_48	Pfam	PF14106	NA	DUF4279
UHGV-0140898_50	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0140898_50	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0140898_50	UniRef90	UniRef90_R5AWG7	Putative endonuclease	NA
UHGV-0140898_50	eggNOG-mapper	742738.HMPREF9460_04035	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0140898_50	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0140898_50	COG	COG4748	NA	NA
UHGV-0140898_50	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA