UHGV-0140928

Genome information

Genome length 32,082 bps

CDS count 49

Completeness 85.76% (medium-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140928
vOTU ID	vOTU-030601
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_417017
BioSample	SAMN05414975
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.11
Jumbo phage	No

Genome content
Genome length	32,082 bps
GC content	63.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.71%
Average CDS length	610.71 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140928_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0140928_2	PHROG	phrog_6745	endolysin	lysis
UHGV-0140928_2	eggNOG-mapper	1158606.I579_01938	Ami_2	NA
UHGV-0140928_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0140928_2	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0140928_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0140928_2	Structural annotation	PF01510, PF19127, MF_04111, TIGR04035, NF008758, COG5263, COG3023	NA	NA
UHGV-0140928_3	PHROG	phrog_199	holin	lysis
UHGV-0140928_3	UniRef90	UniRef90_UPI001106D0BD	phage holin family protein	NA
UHGV-0140928_3	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-0140928_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0140928_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0140928_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0140928_4	PHROG	phrog_9994	NA	unknown function
UHGV-0140928_4	UniRef90	UniRef90_A0A7K3I4P1	H_lectin domain-containing protein	NA
UHGV-0140928_4	eggNOG-mapper	742723.HMPREF9477_00894	NA	NA
UHGV-0140928_4	Structural annotation	PF20747	NA	NA
UHGV-0140928_5	eggNOG-mapper	657322.FPR_21920	NA	NA
UHGV-0140928_5	COG	COG5563	NA	NA
UHGV-0140928_6	PHROG	phrog_36886	NA	unknown function
UHGV-0140928_6	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0140928_6	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0140928_6	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0140928_7	PHROG	phrog_538	minor tail protein	tail
UHGV-0140928_7	UniRef90	UniRef90_UPI001F511E3F	head fiber protein	NA
UHGV-0140928_7	eggNOG-mapper	78345.BMERY_0868	NA	NA
UHGV-0140928_7	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0140928_7	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0140928_8	UniRef90	UniRef90_A0A087E4D3	Phage tail protein	NA
UHGV-0140928_8	eggNOG-mapper	78345.BMERY_0869	NA	NA
UHGV-0140928_8	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0140928_9	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0140928_9	UniRef90	UniRef90_A0A174ADB2	Phage-related protein	NA
UHGV-0140928_9	eggNOG-mapper	1111121.HMPREF1247_0787	nuclear chromosome segregation	NA
UHGV-0140928_9	COG	COG5412	Phage-related protein	NA
UHGV-0140928_11	PHROG	phrog_885	major tail protein	tail
UHGV-0140928_11	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0140928_11	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0140928_11	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0140928_12	Structural annotation	PF11367	NA	NA
UHGV-0140928_13	PHROG	phrog_17977	NA	unknown function
UHGV-0140928_13	UniRef90	UniRef90_UPI00137ADD6B	head-tail adaptor protein	NA
UHGV-0140928_13	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0140928_15	PHROG	phrog_544	major head protein	head and packaging
UHGV-0140928_15	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0140928_15	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0140928_15	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0140928_15	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0140928_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0140928_16	UniRef90	UniRef90_A0A174AAF6	Clp R domain-containing protein	NA
UHGV-0140928_16	Structural annotation	PF06810	NA	NA
UHGV-0140928_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0140928_17	UniRef90	UniRef90_A0A6A8M6L6	HK97 gp10 family phage protein	NA
UHGV-0140928_17	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0140928_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0140928_17	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0140928_17	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0140928_19	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0140928_19	UniRef90	UniRef90_A4E787	Phage protein F-like protein	NA
UHGV-0140928_19	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0140928_19	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0140928_19	COG	COG2369	NA	NA
UHGV-0140928_19	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0140928_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0140928_20	UniRef90	UniRef90_A0A174A8R0	Phage portal protein, SPP1 family	NA
UHGV-0140928_20	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0140928_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0140928_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0140928_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0140928_21	PHROG	phrog_10250	NA	unknown function
UHGV-0140928_21	UniRef90	UniRef90_A0A243IPB6	Terminase	NA
UHGV-0140928_21	eggNOG-mapper	86416.Clopa_2537	phage terminase, large subunit, PBSX family	NA
UHGV-0140928_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0140928_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0140928_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0140928_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0140928_22	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0140928_22	UniRef90	UniRef90_A0A350TI86	LuxR family transcriptional regulator	NA
UHGV-0140928_22	eggNOG-mapper	1200557.JHWV01000006_gene1733	transposase activity	NA
UHGV-0140928_22	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0140928_22	Structural annotation	PF07141	NA	NA
UHGV-0140928_23	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0140928_23	PHROG	phrog_7405	NA	unknown function
UHGV-0140928_23	UniRef90	UniRef90_A0A3A6MTT0	Chromosome partitioning protein ParB	NA
UHGV-0140928_23	eggNOG-mapper	1200557.JHWV01000006_gene1734	ParB-like nuclease domain	NA
UHGV-0140928_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0140928_23	Structural annotation	PF02195, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0140928_24	PHROG	phrog_7858	NA	unknown function
UHGV-0140928_24	UniRef90	UniRef90_UPI0014872BB8	peptidoglycan-binding protein	NA
UHGV-0140928_24	eggNOG-mapper	1200557.JHWV01000006_gene1735	NA	NA
UHGV-0140928_24	Structural annotation	PF11039, PF03602, MF_02125, MF_00084, NF007527, TIGR00571, COG3981, COG0338	NA	NA
UHGV-0140928_25	PHROG	phrog_2450	NA	unknown function
UHGV-0140928_25	UniRef90	UniRef90_A0A372UWN9	NA	NA
UHGV-0140928_25	eggNOG-mapper	411901.BACCAC_01161	NA	NA
UHGV-0140928_26	eggNOG-mapper	411467.BACCAP_03367	NA	NA
UHGV-0140928_28	UniRef90	UniRef90_A0A1Y4BCD8	HTH cro/C1-type domain-containing protein	NA
UHGV-0140928_28	eggNOG-mapper	521095.Apar_0597	sequence-specific DNA binding	NA
UHGV-0140928_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140928_28	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0140928_28	Structural annotation	PF14590, TIGR03070, COG2944	NA	NA
UHGV-0140928_37	PHROG	phrog_21525	NA	unknown function
UHGV-0140928_39	eggNOG-mapper	479437.Elen_0814	NA	NA
UHGV-0140928_39	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0140928_40	Structural annotation	PF09947	NA	NA
UHGV-0140928_41	eggNOG-mapper	521003.COLINT_02330	NA	NA
UHGV-0140928_41	Structural annotation	PF16090	NA	NA
UHGV-0140928_42	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0140928_42	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0140928_42	UniRef90	UniRef90_A0A3N0I8V0	dUTP diphosphatase	NA
UHGV-0140928_42	eggNOG-mapper	1120960.ATXG01000002_gene2951	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0140928_42	Pfam	PF00692	dUTPase	dUTPase
UHGV-0140928_42	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0140928_42	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0140928_42	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0140928_46	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0140928_46	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0140928_46	UniRef90	UniRef90_A0A3N0IB46	IstB_IS21 domain-containing protein	NA
UHGV-0140928_46	eggNOG-mapper	1396.DJ87_956	Bacterial dnaA protein	NA
UHGV-0140928_46	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0140928_46	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0140928_46	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0140928_47	PHROG	phrog_15768	NA	unknown function
UHGV-0140928_47	UniRef90	UniRef90_A0A1H4JD01	NA	NA
UHGV-0140928_47	eggNOG-mapper	521003.COLINT_02320	NA	NA
UHGV-0140928_47	Pfam	PF19808	NA	DUF6291
UHGV-0140928_47	Structural annotation	PF19808	NA	NA
UHGV-0140928_49	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0140928_49	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0140928_49	UniRef90	UniRef90_UPI001AA13485	single-stranded DNA-binding protein	NA
UHGV-0140928_49	eggNOG-mapper	649764.HMPREF0762_01175	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0140928_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0140928_49	COG	COG0629	Single-stranded DNA-binding protein	NA