UHGV-0140962

Genome information

Genome length 36,671 bps

CDS count 54

Completeness 67.34% (medium-quality)

geNomad score 0.9690

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140962
vOTU ID	vOTU-015630
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_408482
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9690
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.09
Jumbo phage	No

Genome content
Genome length	36,671 bps
GC content	55.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	88.90%
Average CDS length	606.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140962_1	KOfam	K14059	int; integrase	NA
UHGV-0140962_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0140962_1	UniRef90	UniRef90_UPI001D022747	site-specific integrase	NA
UHGV-0140962_1	eggNOG-mapper	411459.RUMOBE_02159	Phage integrase family	NA
UHGV-0140962_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0140962_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0140962_2	PHROG	phrog_2162	Sir2 (NAD-dependent deacetylase)	DNA, RNA and nucleotide metabolism
UHGV-0140962_2	UniRef90	UniRef90_A0A416L0I2	Sir2 silent information regulator family NAD-dependent deacetylase	NA
UHGV-0140962_2	eggNOG-mapper	796942.HMPREF9623_01331	COG COG0846 NAD-dependent protein deacetylases, SIR2 family	NA
UHGV-0140962_2	COG	COG0846	NAD-dependent protein deacetylase, SIR2 family	NA
UHGV-0140962_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0140962_3	UniRef90	UniRef90_A0A6N8H383	XRE family transcriptional regulator	NA
UHGV-0140962_3	eggNOG-mapper	397288.C806_01617	Helix-turn-helix XRE-family like proteins	NA
UHGV-0140962_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140962_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0140962_3	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0140962_5	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0140962_5	PHROG	phrog_6357	NA	unknown function
UHGV-0140962_5	UniRef90	UniRef90_UPI0011C83B21	AAA family ATPase	NA
UHGV-0140962_5	eggNOG-mapper	411471.SUBVAR_06581	COG NOG19743 non supervised orthologous group	NA
UHGV-0140962_5	Pfam	PF13481	AAA domain	AAA_25
UHGV-0140962_5	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0140962_6	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0140962_6	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0140962_6	UniRef90	UniRef90_UPI001C3B62EA	DNA adenine methylase	NA
UHGV-0140962_6	eggNOG-mapper	411471.SUBVAR_06973	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0140962_6	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0140962_6	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0140962_6	COG	COG0338	DNA-adenine methylase	NA
UHGV-0140962_6	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-0140962_7	PHROG	phrog_13256	NA	unknown function
UHGV-0140962_7	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0140962_8	PHROG	phrog_918	NA	unknown function
UHGV-0140962_8	UniRef90	UniRef90_UPI00115A7D93	NA	NA
UHGV-0140962_8	eggNOG-mapper	469618.FVAG_01307	NA	NA
UHGV-0140962_8	Pfam	PF19791	NA	DUF6275
UHGV-0140962_8	Structural annotation	PF19791	NA	NA
UHGV-0140962_9	PHROG	phrog_4105	NA	unknown function
UHGV-0140962_9	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0140962_9	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0140962_10	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0140962_10	UniRef90	UniRef90_UPI00156F0E9C	NA	NA
UHGV-0140962_10	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-0140962_10	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0140962_11	KOfam	K07273	acm; lysozyme	NA
UHGV-0140962_11	PHROG	phrog_291	endolysin	lysis
UHGV-0140962_11	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0140962_11	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-0140962_11	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0140962_11	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0140962_11	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0140962_11	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0140962_14	PHROG	phrog_19111	NA	unknown function
UHGV-0140962_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0140962_15	PHROG	phrog_18725	NA	unknown function
UHGV-0140962_15	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0140962_16	PHROG	phrog_13879	NA	unknown function
UHGV-0140962_16	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0140962_16	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0140962_17	PHROG	phrog_1194	NA	unknown function
UHGV-0140962_17	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0140962_17	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0140962_18	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0140962_18	eggNOG-mapper	665956.HMPREF1032_03628	domain protein	NA
UHGV-0140962_18	COG	COG1511	NA	NA
UHGV-0140962_19	PHROG	phrog_706	NA	unknown function
UHGV-0140962_19	UniRef90	UniRef90_UPI0013141117	Gp15 family bacteriophage protein	NA
UHGV-0140962_19	eggNOG-mapper	665956.HMPREF1032_03058	Bacteriophage Gp15 protein	NA
UHGV-0140962_19	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0140962_19	Structural annotation	PF06854	NA	NA
UHGV-0140962_20	PHROG	phrog_11299	NA	unknown function
UHGV-0140962_20	eggNOG-mapper	665956.HMPREF1032_03059	NA	NA
UHGV-0140962_21	PHROG	phrog_3099	NA	unknown function
UHGV-0140962_21	eggNOG-mapper	411471.SUBVAR_06936	NA	NA
UHGV-0140962_21	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0140962_22	PHROG	phrog_3266	tail completion	connector
UHGV-0140962_22	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0140962_22	Structural annotation	PF08873	NA	NA
UHGV-0140962_23	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0140962_23	UniRef90	UniRef90_UPI001967B4B3	minor capsid protein	NA
UHGV-0140962_23	eggNOG-mapper	999411.HMPREF1092_03318	Minor capsid protein	NA
UHGV-0140962_23	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0140962_23	Structural annotation	PF11114	NA	NA
UHGV-0140962_24	Structural annotation	PF20536	NA	NA
UHGV-0140962_25	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0140962_25	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-0140962_27	PHROG	phrog_422	major head protein	head and packaging
UHGV-0140962_27	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0140962_27	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0140962_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0140962_28	UniRef90	UniRef90_A0A4R1QTK7	Minor structural protein GP20	NA
UHGV-0140962_28	eggNOG-mapper	411471.SUBVAR_06994	Phage minor structural protein GP20	NA
UHGV-0140962_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0140962_28	Structural annotation	PF06810	NA	NA
UHGV-0140962_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0140962_31	UniRef90	UniRef90_UPI00196795ED	phage minor capsid protein	NA
UHGV-0140962_31	eggNOG-mapper	411471.SUBVAR_06995	NA	NA
UHGV-0140962_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0140962_31	COG	COG2369	NA	NA
UHGV-0140962_31	Structural annotation	PF06152, PF14220	NA	NA
UHGV-0140962_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0140962_32	UniRef90	UniRef90_D1PRG7	Putative phage minor capsid protein	NA
UHGV-0140962_32	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-0140962_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0140962_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0140962_34	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0140962_34	UniRef90	UniRef90_A0A6N8H4Y1	PBSX family phage terminase large subunit	NA
UHGV-0140962_34	eggNOG-mapper	411471.SUBVAR_06998	Phage terminase, large subunit, PBSX family	NA
UHGV-0140962_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0140962_34	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0140962_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0140962_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0140962_34	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0140962_36	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0140962_36	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0140962_36	UniRef90	UniRef90_A0A6N8H0F4	NGN domain-containing protein	NA
UHGV-0140962_36	eggNOG-mapper	411471.SUBVAR_07000	Transcription termination factor nusG	NA
UHGV-0140962_36	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0140962_36	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0140962_36	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0140962_37	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0140962_37	UniRef90	UniRef90_A0A6N8H2N8	NA	NA
UHGV-0140962_37	eggNOG-mapper	411471.SUBVAR_07001	NA	NA
UHGV-0140962_37	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0140962_37	Structural annotation	PF11985	NA	NA
UHGV-0140962_38	PHROG	phrog_25462	NA	unknown function
UHGV-0140962_38	UniRef90	UniRef90_A0A6N8H1D3	Type VI secretion protein	NA
UHGV-0140962_38	eggNOG-mapper	742733.HMPREF9469_02885	NA	NA
UHGV-0140962_38	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0140962_39	PHROG	phrog_462	lipoprotein	other
UHGV-0140962_39	eggNOG-mapper	411471.SUBVAR_07003	NA	NA
UHGV-0140962_40	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-0140962_40	UniRef90	UniRef90_A0A6N8H2N1	DNA-binding protein	NA
UHGV-0140962_40	eggNOG-mapper	411471.SUBVAR_07004	Mor transcription activator	NA
UHGV-0140962_40	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0140962_40	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0140962_40	Structural annotation	PF08765, COG5566	NA	NA
UHGV-0140962_41	PHROG	phrog_286	NA	unknown function
UHGV-0140962_41	UniRef90	UniRef90_A0A6N8H086	Regulatory protein GemA	NA
UHGV-0140962_41	eggNOG-mapper	411471.SUBVAR_07005	NA	NA
UHGV-0140962_41	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0140962_41	Structural annotation	PF06252	NA	NA
UHGV-0140962_43	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0140962_43	UniRef90	UniRef90_A0A6N3F7T2	Bacteriophage Mu Gam like protein	NA
UHGV-0140962_43	eggNOG-mapper	411471.SUBVAR_07006	Bacteriophage Mu Gam like protein	NA
UHGV-0140962_43	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0140962_43	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-0140962_43	Structural annotation	PF07352, COG4396	NA	NA
UHGV-0140962_44	PHROG	phrog_5671	NA	unknown function
UHGV-0140962_44	eggNOG-mapper	552398.HMPREF0866_03130	NA	NA
UHGV-0140962_46	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0140962_46	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0140962_46	UniRef90	UniRef90_A0A6N8H4X2	ATP-binding protein	NA
UHGV-0140962_46	eggNOG-mapper	411471.SUBVAR_07009	AAA domain	NA
UHGV-0140962_46	Pfam	PF13401	AAA domain	AAA_22
UHGV-0140962_46	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0140962_47	PHROG	phrog_310	transposase	integration and excision
UHGV-0140962_47	UniRef90	UniRef90_A0A6N8H399	MerR family transcriptional regulator	NA
UHGV-0140962_47	eggNOG-mapper	411471.SUBVAR_07010	Mu transposase, C-terminal	NA
UHGV-0140962_47	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0140962_47	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0140962_47	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0140962_47	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0140962_48	Structural annotation	PF15582, MF_00791, NF041178, COG2847	NA	NA
UHGV-0140962_53	UniRef90	UniRef90_UPI0019671B18	transcriptional regulator	NA
UHGV-0140962_53	eggNOG-mapper	929506.CbC4_1187	NA	NA
UHGV-0140962_53	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0140962_54	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0140962_54	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0140962_54	UniRef90	UniRef90_UPI001D0F3786	helix-turn-helix domain-containing protein	NA
UHGV-0140962_54	eggNOG-mapper	411471.SUBVAR_07015	NA	NA
UHGV-0140962_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140962_54	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0140962_54	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA