UHGV-0140984

Genome information

Genome length 20,698 bps

CDS count 34

Completeness 62.94% (medium-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140984
vOTU ID	vOTU-032584
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_399137
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.06
Jumbo phage	No

Genome content
Genome length	20,698 bps
GC content	45.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	97.11%
Average CDS length	594.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140984_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0140984_1	PHROG	phrog_3088	amidase	lysis
UHGV-0140984_1	UniRef90	UniRef90_A0A412AXM4	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0140984_1	eggNOG-mapper	428125.CLOLEP_00171	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0140984_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0140984_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0140984_2	PHROG	phrog_7121	tail fiber protein	tail
UHGV-0140984_2	UniRef90	UniRef90_A7VT91	Peptidase S74 domain-containing protein	NA
UHGV-0140984_2	eggNOG-mapper	428125.CLOLEP_00172	COG COG5295 Autotransporter adhesin	NA
UHGV-0140984_2	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0140984_2	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0140984_2	Structural annotation	PF10651	NA	NA
UHGV-0140984_3	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0140984_3	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0140984_3	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0140984_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0140984_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0140984_3	COG	COG4926	Phage-related protein	NA
UHGV-0140984_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0140984_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0140984_4	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0140984_4	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0140984_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0140984_4	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0140984_5	PHROG	phrog_23464	NA	unknown function
UHGV-0140984_5	UniRef90	UniRef90_A0A1C6H5M9	Phage-related minor tail protein	NA
UHGV-0140984_5	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-0140984_5	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0140984_5	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-0140984_6	PHROG	phrog_3033	NA	unknown function
UHGV-0140984_6	eggNOG-mapper	1280671.AUJH01000012_gene3142	NA	NA
UHGV-0140984_7	PHROG	phrog_709	NA	unknown function
UHGV-0140984_7	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-0140984_7	Structural annotation	PF11836	NA	NA
UHGV-0140984_8	PHROG	phrog_88	major tail protein	tail
UHGV-0140984_8	UniRef90	UniRef90_A0A1C6H6F0	Phage major tail protein, phi13 family	NA
UHGV-0140984_8	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-0140984_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0140984_8	Structural annotation	PF06488, TIGR01603, COG3157	NA	NA
UHGV-0140984_9	PHROG	phrog_78	tail terminator	connector
UHGV-0140984_9	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-0140984_9	eggNOG-mapper	411471.SUBVAR_05856	NA	NA
UHGV-0140984_9	Structural annotation	PF20765	NA	NA
UHGV-0140984_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0140984_10	UniRef90	UniRef90_UPI000C7BEE97	HK97 gp10 family phage protein	NA
UHGV-0140984_10	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0140984_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0140984_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0140984_11	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0140984_11	UniRef90	UniRef90_A0A2V2GSS5	Phage head-tail adapter protein	NA
UHGV-0140984_11	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-0140984_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0140984_12	PHROG	phrog_2550	NA	unknown function
UHGV-0140984_12	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0140984_12	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0140984_12	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0140984_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0140984_13	UniRef90	UniRef90_A0A1C6H720	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0140984_13	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0140984_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0140984_13	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0140984_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0140984_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0140984_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0140984_14	KOfam	K06904	NA	NA
UHGV-0140984_14	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0140984_14	UniRef90	UniRef90_A0A1C6H687	Phage prohead protease, HK97 family	NA
UHGV-0140984_14	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0140984_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0140984_14	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0140984_14	COG	COG3740	Phage head maturation protease	NA
UHGV-0140984_14	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0140984_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0140984_15	UniRef90	UniRef90_A0A1C6H763	Phage portal protein, HK97 family	NA
UHGV-0140984_15	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0140984_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0140984_15	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0140984_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0140984_15	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0140984_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0140984_16	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-0140984_16	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0140984_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0140984_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0140984_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0140984_16	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0140984_17	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0140984_17	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0140984_17	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0140984_17	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0140984_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0140984_20	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0140984_20	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0140984_20	UniRef90	UniRef90_A0A2V2GQ57	HNH endonuclease	NA
UHGV-0140984_20	eggNOG-mapper	1226322.HMPREF1545_00111	HNH nucleases	NA
UHGV-0140984_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0140984_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0140984_20	Structural annotation	TIGR02646	NA	NA
UHGV-0140984_23	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0140984_23	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0140984_23	UniRef90	UniRef90_A0A412AQ35	Addiction module toxin, HicA family	NA
UHGV-0140984_23	eggNOG-mapper	913865.DOT_1066	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0140984_23	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0140984_23	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0140984_24	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0140984_24	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0140984_24	UniRef90	UniRef90_A0A412AQ21	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0140984_24	eggNOG-mapper	1195236.CTER_2094	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0140984_24	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0140984_24	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0140984_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0140984_25	UniRef90	UniRef90_A0A3D3FGT2	Sigma70_r4 domain-containing protein	NA
UHGV-0140984_25	eggNOG-mapper	742741.HMPREF9475_02386	sigma factor activity	NA
UHGV-0140984_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0140984_25	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0140984_34	PHROG	phrog_924	NA	unknown function
UHGV-0140984_34	UniRef90	UniRef90_A0A413FXK7	NA	NA
UHGV-0140984_34	Pfam	PF04448	NA	DUF551