UHGV-0141135

Genome information

Genome length 35,529 bps

CDS count 51

Completeness 87.51% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0141135
vOTU ID	vOTU-032697
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_431157
BioSample	SAMN05545041
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.73
Jumbo phage	No

Genome content
Genome length	35,529 bps
GC content	56.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	95.23%
Average CDS length	666.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0141135_1	UniRef90	UniRef90_A0A316P260	NA	NA
UHGV-0141135_1	eggNOG-mapper	665956.HMPREF1032_02749	NA	NA
UHGV-0141135_2	KOfam	K14059	int; integrase	NA
UHGV-0141135_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0141135_2	UniRef90	UniRef90_UPI00195DFC45	site-specific integrase	NA
UHGV-0141135_2	eggNOG-mapper	748224.HMPREF9436_01375	Phage integrase family	NA
UHGV-0141135_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0141135_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0141135_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0141135_3	PHROG	phrog_27136	NA	unknown function
UHGV-0141135_3	UniRef90	UniRef90_A0A6I3Q7L2	Zinc ribbon domain-containing protein	NA
UHGV-0141135_3	eggNOG-mapper	1282664.H354_06486	Short C-terminal domain	NA
UHGV-0141135_3	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0141135_4	PHROG	phrog_87	metallo-protease	other
UHGV-0141135_4	UniRef90	UniRef90_A0A8J6LZP4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0141135_4	eggNOG-mapper	1352230.S6B1N5_9CAUD	Pfam:Peptidase_M78	NA
UHGV-0141135_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0141135_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0141135_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0141135_5	UniRef90	UniRef90_A0A8J6J841	Helix-turn-helix domain-containing protein	NA
UHGV-0141135_5	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0141135_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0141135_5	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-0141135_6	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0141135_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141135_6	Structural annotation	PF10078, NF040507, COG3655	NA	NA
UHGV-0141135_8	PHROG	phrog_750	NA	unknown function
UHGV-0141135_8	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-0141135_8	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0141135_9	UniRef90	UniRef90_UPI000836B121	helix-turn-helix transcriptional regulator	NA
UHGV-0141135_9	eggNOG-mapper	1235792.C808_01552	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0141135_9	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0141135_9	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0141135_10	UniRef90	UniRef90_A0A1C6D8K2	DNA binding domain, excisionase family	NA
UHGV-0141135_10	eggNOG-mapper	693977.Deipr_1987	Helix-turn-helix domain	NA
UHGV-0141135_10	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0141135_10	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0141135_10	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0141135_10	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0141135_12	UniRef90	UniRef90_UPI001967278A	NA	NA
UHGV-0141135_12	eggNOG-mapper	97139.C824_03650	NA	NA
UHGV-0141135_12	Pfam	PF12957	NA	DUF3846
UHGV-0141135_12	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0141135_12	Structural annotation	PF12957	NA	NA
UHGV-0141135_13	PHROG	phrog_1733	NA	unknown function
UHGV-0141135_13	UniRef90	UniRef90_UPI00196846D9	cell envelope integrity protein TolA	NA
UHGV-0141135_13	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-0141135_13	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0141135_13	Structural annotation	PF03677	NA	NA
UHGV-0141135_14	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0141135_14	PHROG	phrog_1499	NA	unknown function
UHGV-0141135_14	UniRef90	UniRef90_UPI001967B614	AAA family ATPase	NA
UHGV-0141135_14	eggNOG-mapper	1235798.C817_04766	AAA ATPase domain	NA
UHGV-0141135_14	Pfam	PF13476	AAA domain	AAA_23
UHGV-0141135_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0141135_14	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0141135_15	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0141135_15	UniRef90	UniRef90_UPI00196823E0	AAA family ATPase	NA
UHGV-0141135_15	eggNOG-mapper	645991.Sgly_0321	AAA domain	NA
UHGV-0141135_15	Pfam	PF13479	AAA domain	AAA_24
UHGV-0141135_15	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0141135_16	PHROG	phrog_2698	NA	unknown function
UHGV-0141135_16	UniRef90	UniRef90_UPI001966DD81	NA	NA
UHGV-0141135_16	eggNOG-mapper	394503.Ccel_3308	NA	NA
UHGV-0141135_16	Structural annotation	PF05037	NA	NA
UHGV-0141135_17	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0141135_17	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0141135_17	UniRef90	UniRef90_UPI0019672759	DEAD/DEAH box helicase	NA
UHGV-0141135_17	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-0141135_17	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0141135_17	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0141135_17	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0141135_17	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0141135_17	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0141135_18	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0141135_18	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0141135_18	UniRef90	UniRef90_UPI001967B211	AAA family ATPase	NA
UHGV-0141135_18	eggNOG-mapper	552396.HMPREF0863_02435	Primase C terminal 2 (PriCT-2)	NA
UHGV-0141135_18	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0141135_18	Pfam	PF13481	AAA domain	AAA_25
UHGV-0141135_18	COG	COG3598	RecA-family ATPase	NA
UHGV-0141135_18	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0141135_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0141135_19	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0141135_19	UniRef90	UniRef90_UPI001967BB42	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0141135_19	eggNOG-mapper	742738.HMPREF9460_01358	Endodeoxyribonuclease RusA	NA
UHGV-0141135_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0141135_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0141135_19	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0141135_21	PHROG	phrog_38832	NA	unknown function
UHGV-0141135_21	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0141135_23	PHROG	phrog_924	NA	unknown function
UHGV-0141135_23	UniRef90	UniRef90_UPI00195D1DCA	NA	NA
UHGV-0141135_23	Pfam	PF04448	NA	DUF551
UHGV-0141135_23	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0141135_24	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0141135_25	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0141135_25	UniRef90	UniRef90_A0A0U2WUA4	Phage-related protein	NA
UHGV-0141135_25	eggNOG-mapper	665956.HMPREF1032_03082	NA	NA
UHGV-0141135_28	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0141135_28	Structural annotation	PF04545	NA	NA
UHGV-0141135_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0141135_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0141135_29	UniRef90	UniRef90_A0A372V657	Terminase small subunit	NA
UHGV-0141135_29	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-0141135_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0141135_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0141135_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0141135_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0141135_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0141135_30	UniRef90	UniRef90_A0A372V3S5	Terminase	NA
UHGV-0141135_30	eggNOG-mapper	645991.Sgly_0335	Phage terminase, large subunit, PBSX family	NA
UHGV-0141135_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0141135_30	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0141135_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0141135_31	UniRef90	UniRef90_A0A372V6F6	Capsid protein	NA
UHGV-0141135_31	eggNOG-mapper	1507.HMPREF0262_01175	NA	NA
UHGV-0141135_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0141135_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0141135_32	UniRef90	UniRef90_UPI000A270255	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0141135_32	eggNOG-mapper	1507.HMPREF0262_01176	Phage minor capsid protein 2	NA
UHGV-0141135_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0141135_32	COG	COG2369	NA	NA
UHGV-0141135_32	Structural annotation	PF06152, NF005921, TIGR01641, COG2153	NA	NA
UHGV-0141135_35	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0141135_36	UniRef90	UniRef90_A0A644YJM4	S-l_SbsC_C domain-containing protein	NA
UHGV-0141135_36	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0141135_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0141135_38	eggNOG-mapper	1122918.KB907248_gene4496	NA	NA
UHGV-0141135_39	PHROG	phrog_8710	NA	unknown function
UHGV-0141135_39	eggNOG-mapper	1507.HMPREF0262_01181	NA	NA
UHGV-0141135_39	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0141135_40	UniRef90	UniRef90_UPI0003798593	minor capsid protein	NA
UHGV-0141135_40	eggNOG-mapper	1507.HMPREF0262_01182	NA	NA
UHGV-0141135_41	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0141135_41	UniRef90	UniRef90_UPI000A26871F	minor capsid protein	NA
UHGV-0141135_41	eggNOG-mapper	1304866.K413DRAFT_0780	NA	NA
UHGV-0141135_41	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0141135_41	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0141135_42	PHROG	phrog_820	major tail protein	tail
UHGV-0141135_42	eggNOG-mapper	1507.HMPREF0262_01184	domain, Protein	NA
UHGV-0141135_42	COG	COG5492	NA	NA
UHGV-0141135_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0141135_43	PHROG	phrog_8300	NA	unknown function
UHGV-0141135_43	eggNOG-mapper	1507.HMPREF0262_01185	NA	NA
UHGV-0141135_43	Structural annotation	PF06896	NA	NA
UHGV-0141135_44	PHROG	phrog_8355	NA	unknown function
UHGV-0141135_44	UniRef90	UniRef90_UPI0018A7EA5D	Gp15 family bacteriophage protein	NA
UHGV-0141135_44	eggNOG-mapper	1507.HMPREF0262_01186	NA	NA
UHGV-0141135_44	Structural annotation	PF06854	NA	NA
UHGV-0141135_45	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0141135_45	UniRef90	UniRef90_S9TWQ7	Phage-like protein	NA
UHGV-0141135_45	eggNOG-mapper	1122918.KB907248_gene4489	minor tail protein	NA
UHGV-0141135_45	COG	COG1511	NA	NA
UHGV-0141135_46	PHROG	phrog_1194	NA	unknown function
UHGV-0141135_46	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0141135_46	Pfam	PF20458	NA	DUF6711
UHGV-0141135_46	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0141135_47	PHROG	phrog_13879	NA	unknown function
UHGV-0141135_47	eggNOG-mapper	1235800.C819_00474	NA	NA
UHGV-0141135_47	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0141135_48	PHROG	phrog_13564	minor tail protein	tail
UHGV-0141135_48	eggNOG-mapper	1235800.C819_00473	NA	NA
UHGV-0141135_49	PHROG	phrog_4492	tail fiber protein	tail
UHGV-0141135_49	eggNOG-mapper	1304866.K413DRAFT_0769	NA	NA
UHGV-0141135_50	PHROG	phrog_24451	NA	unknown function
UHGV-0141135_50	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA