UHGV-0141284

Genome information

Genome length 40,308 bps

CDS count 63

Completeness 68.33% (medium-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0141284
vOTU ID	vOTU-016086
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_402672
BioSample	SAMN05214691
Country	Russia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.3
Jumbo phage	No

Genome content
Genome length	40,308 bps
GC content	38.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	89.38%
Average CDS length	577.71 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0141284_2	PHROG	phrog_6493	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0141284_2	UniRef90	UniRef90_UPI001020B14A	DnaD domain protein	NA
UHGV-0141284_2	eggNOG-mapper	1029718.SFBM_0770	DnaD domain protein	NA
UHGV-0141284_2	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0141284_2	Structural annotation	PF07106, NF040642, COG3355	NA	NA
UHGV-0141284_3	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0141284_3	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0141284_6	UniRef90	UniRef90_A0A8D9PG44	Tax1-binding protein	NA
UHGV-0141284_10	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0141284_13	PHROG	phrog_2316	NA	unknown function
UHGV-0141284_13	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0141284_13	eggNOG-mapper	1227349.C170_11270	NA	NA
UHGV-0141284_13	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-0141284_14	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-0141284_14	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0141284_14	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0141284_15	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0141284_15	UniRef90	UniRef90_A0A8D9UIV2	Terminase	NA
UHGV-0141284_15	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0141284_15	COG	COG5410	NA	NA
UHGV-0141284_15	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0141284_16	PHROG	phrog_9529	NA	unknown function
UHGV-0141284_16	UniRef90	UniRef90_UPI000836A084	NA	NA
UHGV-0141284_16	eggNOG-mapper	202752.JL53_03720	NA	NA
UHGV-0141284_16	Pfam	PF04480	NA	DUF559
UHGV-0141284_16	COG	COG2852	Very-short-patch-repair endonuclease	NA
UHGV-0141284_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0141284_17	UniRef90	UniRef90_A0A6N7XL46	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0141284_17	eggNOG-mapper	1123288.SOV_6c01520	sigma factor activity	NA
UHGV-0141284_17	Pfam	PF07374	NA	DUF1492
UHGV-0141284_17	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0141284_17	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0141284_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-0141284_18	UniRef90	UniRef90_A0A412RQZ0	Phage portal protein	NA
UHGV-0141284_18	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0141284_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0141284_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0141284_19	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0141284_19	UniRef90	UniRef90_A0A412RR50	Phage_Mu_F domain-containing protein	NA
UHGV-0141284_19	eggNOG-mapper	1176423.I6R1H0_9VIRU	Phage Mu protein F like protein	NA
UHGV-0141284_19	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0141284_19	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0141284_20	UniRef90	UniRef90_UPI000E41BB01	NA	NA
UHGV-0141284_21	PHROG	phrog_909	major head protein	head and packaging
UHGV-0141284_21	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0141284_21	eggNOG-mapper	1078085.HMPREF1210_01145	NA	NA
UHGV-0141284_22	PHROG	phrog_29	major head protein	head and packaging
UHGV-0141284_22	UniRef90	UniRef90_A0A412RQU1	Major capsid protein	NA
UHGV-0141284_22	eggNOG-mapper	1118054.CAGW01000102_gene4700	Phage major capsid protein E	NA
UHGV-0141284_22	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0141284_22	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0141284_23	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-0141284_23	Structural annotation	PF21169	NA	NA
UHGV-0141284_24	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0141284_25	PHROG	phrog_1863	NA	unknown function
UHGV-0141284_25	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0141284_26	PHROG	phrog_18218	NA	unknown function
UHGV-0141284_26	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0141284_26	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0141284_26	Structural annotation	PF06946	NA	NA
UHGV-0141284_27	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0141284_27	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0141284_28	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0141284_28	AcrCatalog	cluster_24841	NA	NA
UHGV-0141284_29	Structural annotation	PF05657	NA	NA
UHGV-0141284_30	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-0141284_30	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0141284_33	KOfam	K07273	acm; lysozyme	NA
UHGV-0141284_33	PHROG	phrog_291	endolysin	lysis
UHGV-0141284_33	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0141284_33	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0141284_33	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0141284_33	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0141284_33	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-0141284_34	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0141284_34	UniRef90	UniRef90_A0A1I0JNI7	Phage-related protein	NA
UHGV-0141284_34	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0141284_34	COG	COG1511	NA	NA
UHGV-0141284_35	PHROG	phrog_1194	NA	unknown function
UHGV-0141284_35	eggNOG-mapper	997830.HMPREF1124_0608	NA	NA
UHGV-0141284_35	Pfam	PF20458	NA	DUF6711
UHGV-0141284_35	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0141284_36	PHROG	phrog_6616	tail protein	tail
UHGV-0141284_36	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-0141284_36	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0141284_36	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0141284_36	Structural annotation	PF05113, PF20010, NF033848, COG3500	NA	NA
UHGV-0141284_37	eggNOG-mapper	1121866.AUGK01000003_gene1445	NA	NA
UHGV-0141284_37	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0141284_38	PHROG	phrog_5302	tail protein	tail
UHGV-0141284_38	UniRef90	UniRef90_A0A345BPB9	Lectin	NA
UHGV-0141284_38	eggNOG-mapper	665956.HMPREF1032_00690	NA	NA
UHGV-0141284_38	Structural annotation	COG1262	NA	NA
UHGV-0141284_39	PHROG	phrog_20201	NA	unknown function
UHGV-0141284_40	PHROG	phrog_806	NA	unknown function
UHGV-0141284_40	UniRef90	UniRef90_A0A395Z832	NA	NA
UHGV-0141284_40	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-0141284_40	Pfam	PF11611	NA	DUF4352
UHGV-0141284_40	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0141284_41	PHROG	phrog_3845	NA	unknown function
UHGV-0141284_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0141284_42	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0141284_42	UniRef90	UniRef90_A0A412RR31	Helix-turn-helix domain-containing protein	NA
UHGV-0141284_42	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0141284_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141284_42	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0141284_42	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0141284_43	UniRef90	UniRef90_A0A412RQX5	XRE family transcriptional regulator	NA
UHGV-0141284_43	eggNOG-mapper	1232449.BAHV02000016_gene1846	Peptidase S24-like	NA
UHGV-0141284_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141284_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0141284_43	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0141284_44	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0141284_44	UniRef90	UniRef90_A0A412RQX1	Phage repressor protein	NA
UHGV-0141284_44	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-0141284_44	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0141284_44	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0141284_44	COG	COG3617	Prophage antirepressor	NA
UHGV-0141284_44	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0141284_46	eggNOG-mapper	742765.HMPREF9457_03017	peptidase	NA
UHGV-0141284_46	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0141284_48	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0141284_48	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0141284_48	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0141284_48	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0141284_48	Pfam	PF13476	AAA domain	AAA_23
UHGV-0141284_48	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0141284_48	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0141284_51	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0141284_51	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0141284_51	UniRef90	UniRef90_A0A1C5WMV6	p33	NA
UHGV-0141284_51	eggNOG-mapper	431943.CKL_0416	RecT family	NA
UHGV-0141284_51	Pfam	PF03837	RecT family	RecT
UHGV-0141284_51	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0141284_51	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0141284_51	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0141284_53	PHROG	phrog_25456	NA	unknown function
UHGV-0141284_54	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0141284_54	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0141284_54	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0141284_54	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0141284_54	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0141284_56	PHROG	phrog_8684	NA	unknown function
UHGV-0141284_56	UniRef90	UniRef90_A0A3D5WQK7	YopX domain-containing protein	NA
UHGV-0141284_56	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-0141284_56	Pfam	PF09643	YopX protein	YopX
UHGV-0141284_56	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0141284_56	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0141284_57	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0141284_57	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0141284_57	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-0141284_57	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0141284_57	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0141284_57	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0141284_57	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0141284_57	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0141284_57	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0141284_58	PHROG	phrog_20593	NA	unknown function
UHGV-0141284_60	PHROG	phrog_19106	NA	unknown function
UHGV-0141284_60	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0141284_60	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0141284_60	Structural annotation	TIGR01453	NA	NA
UHGV-0141284_62	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0141284_62	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0141284_62	eggNOG-mapper	357804.Ping_0705	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0141284_62	COG	COG0863	DNA modification methylase	NA
UHGV-0141284_63	KOfam	K00133	asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]	NA
UHGV-0141284_63	PHROG	phrog_27440	NA	unknown function
UHGV-0141284_63	UniRef90	UniRef90_UPI00125CE837	aspartate-semialdehyde dehydrogenase	NA
UHGV-0141284_63	eggNOG-mapper	1349822.NSB1T_01250	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate	NA
UHGV-0141284_63	Pfam	PF02774	Semialdehyde dehydrogenase, dimerisation domain	Semialdhyde_dhC
UHGV-0141284_63	COG	COG0136	Aspartate-semialdehyde dehydrogenase	NA