UHGV-0141286

Genome information

Genome length 40,051 bps

CDS count 70

Completeness 97.92% (high-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0141286
vOTU ID	vOTU-061638
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_402673
BioSample	SAMN05214691
Country	Russia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.92% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.07
Jumbo phage	No

Genome content
Genome length	40,051 bps
GC content	49.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	91.06%
Average CDS length	526.54 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0141286_2	Structural annotation	PF17457	NA	NA
UHGV-0141286_3	KOfam	K06940	NA	NA
UHGV-0141286_3	PHROG	phrog_32498	NA	unknown function
UHGV-0141286_3	UniRef90	UniRef90_A0A1W7ABU4	Flagellin N-methylase	NA
UHGV-0141286_3	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0141286_3	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0141286_3	Structural annotation	PF03692	NA	NA
UHGV-0141286_7	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0141286_7	UniRef90	UniRef90_A0A355KVL2	DNA cytosine methyltransferase	NA
UHGV-0141286_7	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0141286_7	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0141286_7	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0141286_8	PHROG	phrog_824	NA	unknown function
UHGV-0141286_8	UniRef90	UniRef90_A0A6N8GXS9	VRR-NUC domain-containing protein	NA
UHGV-0141286_8	eggNOG-mapper	665956.HMPREF1032_00132	VRR_NUC	NA
UHGV-0141286_8	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0141286_10	PHROG	phrog_16304	NA	unknown function
UHGV-0141286_10	UniRef90	UniRef90_UPI001E560709	NA	NA
UHGV-0141286_10	eggNOG-mapper	1226322.HMPREF1545_00016	HNH endonuclease	NA
UHGV-0141286_10	Pfam	PF19808	NA	DUF6291
UHGV-0141286_10	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0141286_10	Structural annotation	PF19808	NA	NA
UHGV-0141286_11	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0141286_11	UniRef90	UniRef90_A0A329URB3	Lactamase_B domain-containing protein	NA
UHGV-0141286_11	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0141286_11	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0141286_11	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0141286_11	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0141286_12	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0141286_12	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0141286_12	UniRef90	UniRef90_A0A329URJ6	Recombinase	NA
UHGV-0141286_12	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-0141286_12	Pfam	PF03837	RecT family	RecT
UHGV-0141286_12	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0141286_12	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0141286_12	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0141286_13	PHROG	phrog_674	NA	unknown function
UHGV-0141286_13	UniRef90	UniRef90_A0A7X9AE52	NA	NA
UHGV-0141286_13	eggNOG-mapper	1227266.HMPREF1551_00563	NA	NA
UHGV-0141286_13	Pfam	PF07083	NA	DUF1351
UHGV-0141286_13	Structural annotation	PF07083	NA	NA
UHGV-0141286_16	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0141286_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141286_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0141286_16	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0141286_19	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0141286_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0141286_19	UniRef90	UniRef90_A0A564SVW9	HTH-type transcriptional regulator ImmR	NA
UHGV-0141286_19	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0141286_19	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0141286_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0141286_19	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0141286_21	eggNOG-mapper	500635.MITSMUL_05163	NA	NA
UHGV-0141286_23	UniRef90	UniRef90_A0A1I5TCM5	Helix-turn-helix	NA
UHGV-0141286_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141286_23	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0141286_24	KOfam	K14059	int; integrase	NA
UHGV-0141286_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0141286_24	UniRef90	UniRef90_A0A1Y4T0F9	Tyr recombinase domain-containing protein	NA
UHGV-0141286_24	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0141286_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0141286_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0141286_24	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0141286_26	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0141286_27	PHROG	phrog_28802	NA	unknown function
UHGV-0141286_27	Structural annotation	PF12510	NA	NA
UHGV-0141286_28	PHROG	phrog_20016	NA	unknown function
UHGV-0141286_28	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0141286_28	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0141286_28	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0141286_29	PHROG	phrog_16490	NA	unknown function
UHGV-0141286_29	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0141286_30	PHROG	phrog_22984	NA	unknown function
UHGV-0141286_31	PHROG	phrog_21718	NA	unknown function
UHGV-0141286_31	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0141286_32	PHROG	phrog_3754	NA	unknown function
UHGV-0141286_32	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0141286_34	eggNOG-mapper	1118055.CAGU01000028_gene99	NA	NA
UHGV-0141286_34	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0141286_34	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0141286_35	PHROG	phrog_13470	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0141286_35	UniRef90	UniRef90_A0A0U5PL36	AP2 domain protein	NA
UHGV-0141286_35	eggNOG-mapper	1304866.K413DRAFT_4685	NA	NA
UHGV-0141286_36	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0141286_36	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0141286_36	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0141286_37	PHROG	phrog_1129	holin	lysis
UHGV-0141286_37	UniRef90	UniRef90_A0A3R5ZDU6	Holin	NA
UHGV-0141286_37	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0141286_37	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0141286_37	Structural annotation	PF06946	NA	NA
UHGV-0141286_38	UniRef90	UniRef90_UPI00102F4BEE	CTP synthase	NA
UHGV-0141286_38	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0141286_39	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0141286_39	PHROG	phrog_7698	endolysin	lysis
UHGV-0141286_39	UniRef90	UniRef90_A0A1C5V282	Exo-glucosaminidase lytG	NA
UHGV-0141286_39	eggNOG-mapper	877411.JMMA01000002_gene2384	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0141286_39	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0141286_39	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0141286_39	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0141286_39	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-0141286_43	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0141286_43	PHROG	phrog_10030	tail length tape measure protein	tail
UHGV-0141286_43	UniRef90	UniRef90_A0A367FT02	Peptidase_M23 domain-containing protein (Fragment)	NA
UHGV-0141286_43	eggNOG-mapper	240292.Ava_3195	PFAM Peptidase family M23	NA
UHGV-0141286_43	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0141286_43	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0141286_44	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0141286_45	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0141286_45	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0141286_45	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0141286_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0141286_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0141286_45	COG	COG4926	Phage-related protein	NA
UHGV-0141286_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0141286_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0141286_46	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0141286_46	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0141286_46	COG	COG4722	Phage-related protein YomH	NA
UHGV-0141286_46	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0141286_47	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0141286_47	UniRef90	UniRef90_A0A3D0EFB4	Phage tail protein (Fragment)	NA
UHGV-0141286_47	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0141286_47	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0141286_47	Structural annotation	PF20155	NA	NA
UHGV-0141286_49	PHROG	phrog_18646	NA	unknown function
UHGV-0141286_50	PHROG	phrog_885	major tail protein	tail
UHGV-0141286_50	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0141286_50	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0141286_50	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0141286_51	Structural annotation	PF11367	NA	NA
UHGV-0141286_52	PHROG	phrog_17977	NA	unknown function
UHGV-0141286_52	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0141286_52	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0141286_54	PHROG	phrog_544	major head protein	head and packaging
UHGV-0141286_54	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0141286_54	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0141286_54	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0141286_55	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0141286_55	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0141286_55	Structural annotation	PF06810	NA	NA
UHGV-0141286_56	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0141286_56	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0141286_56	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0141286_57	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0141286_57	UniRef90	UniRef90_A0A7X5E1T2	HK97 gp10 family phage protein	NA
UHGV-0141286_57	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0141286_57	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0141286_57	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0141286_57	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0141286_58	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0141286_58	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0141286_58	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0141286_58	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0141286_58	COG	COG2369	NA	NA
UHGV-0141286_58	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0141286_59	PHROG	phrog_64	portal protein	head and packaging
UHGV-0141286_59	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0141286_59	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0141286_59	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0141286_59	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0141286_60	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0141286_60	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0141286_60	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0141286_60	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0141286_60	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0141286_60	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0141286_60	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0141286_60	COG	COG1783	Phage terminase large subunit	NA
UHGV-0141286_60	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0141286_63	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0141286_63	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0141286_63	UniRef90	UniRef90_A0A101WI32	Methyltransferase	NA
UHGV-0141286_63	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-0141286_63	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0141286_63	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0141286_63	COG	COG0863	DNA modification methylase	NA
UHGV-0141286_63	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0141286_64	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0141286_64	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0141286_64	UniRef90	UniRef90_A0A810PZK9	ParB domain-containing protein	NA
UHGV-0141286_64	eggNOG-mapper	1211035.CD30_13045	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0141286_64	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0141286_64	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0141286_64	COG	COG0863	DNA modification methylase	NA
UHGV-0141286_64	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0141286_65	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0141286_65	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0141286_65	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0141286_65	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA
UHGV-0141286_69	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0141286_70	PHROG	phrog_9562	NA	unknown function
UHGV-0141286_70	UniRef90	UniRef90_A0A3D2DZZ6	Pentapeptide repeat-containing protein (Fragment)	NA
UHGV-0141286_70	eggNOG-mapper	1151292.QEW_3618	Pentapeptide repeat protein	NA
UHGV-0141286_70	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0141286_70	Pfam	PF19062	NA	DUF5758
UHGV-0141286_70	COG	COG1357	NA	NA
UHGV-0141286_70	Structural annotation	PF19062, PF13599	NA	NA