UHGV-0141458

Genome information

Genome length 42,843 bps

CDS count 60

Completeness 90.09% (high-quality)

geNomad score 0.9470

Prediction confidence Confident

Genome information
Genome ID	UHGV-0141458
vOTU ID	vOTU-066441
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_441833
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.09% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9470
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.42
Jumbo phage	No

Genome content
Genome length	42,843 bps
GC content	53.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	89.44%
Average CDS length	642.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0141458_2	UniRef90	UniRef90_UPI0011DD442D	NA	NA
UHGV-0141458_2	eggNOG-mapper	397288.C806_00306	NA	NA
UHGV-0141458_2	Pfam	PF19499	NA	DUF6034
UHGV-0141458_3	PHROG	phrog_2649	endolysin	lysis
UHGV-0141458_3	UniRef90	UniRef90_UPI001CC4B3E9	peptidoglycan-binding protein	NA
UHGV-0141458_3	eggNOG-mapper	32057.KB217478_gene594	Putative peptidoglycan binding domain	NA
UHGV-0141458_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0141458_3	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0141458_4	eggNOG-mapper	693746.OBV_00950	Transposase	NA
UHGV-0141458_4	COG	COG3547	Transposase	NA
UHGV-0141458_6	UniRef90	UniRef90_A0A1V5U0C2	ABC-2 family transporter protein	NA
UHGV-0141458_6	eggNOG-mapper	485913.Krac_0926	NA	NA
UHGV-0141458_7	UniRef90	UniRef90_A0A7C4B1B6	M56 family metallopeptidase	NA
UHGV-0141458_7	eggNOG-mapper	411459.RUMOBE_00364	NA	NA
UHGV-0141458_7	Pfam	PF19499	NA	DUF6034
UHGV-0141458_9	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0141458_9	UniRef90	UniRef90_UPI0018A8A93A	RNA polymerase sigma factor	NA
UHGV-0141458_9	eggNOG-mapper	1121289.JHVL01000049_gene862	Sigma-70, region 4	NA
UHGV-0141458_9	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0141458_9	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0141458_10	Pfam	PF14285	NA	DUF4367
UHGV-0141458_12	PHROG	phrog_26285	NA	unknown function
UHGV-0141458_12	UniRef90	UniRef90_A0A7X7EHC2	Relaxase	NA
UHGV-0141458_12	eggNOG-mapper	1120746.CCNL01000010_gene1292	relaxase mobilization nuclease domain protein	NA
UHGV-0141458_12	COG	COG3843	Type IV secretory pathway, VirD2 component (relaxase)	NA
UHGV-0141458_13	UniRef90	UniRef90_A0A3A1XJE8	AAA family ATPase (Fragment)	NA
UHGV-0141458_13	eggNOG-mapper	411461.DORFOR_03174	Putative DNA-binding domain	NA
UHGV-0141458_13	Pfam	PF21247	Filamentation induced by cAMP protein Fic-like, C-terminal domain	Fic-like_C
UHGV-0141458_13	COG	COG2865	Predicted transcriptional regulator, contains HTH domain	NA
UHGV-0141458_14	eggNOG-mapper	552398.HMPREF0866_02719	NA	NA
UHGV-0141458_15	UniRef90	UniRef90_A0A1Q6JRF0	Succinate dehydrogenase	NA
UHGV-0141458_15	eggNOG-mapper	663278.Ethha_1912	NA	NA
UHGV-0141458_15	AcrCatalog	cluster_6684	NA	NA
UHGV-0141458_15	Pfam	PF18956	NA	DUF5699
UHGV-0141458_16	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0141458_16	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0141458_16	UniRef90	UniRef90_UPI001D0F3786	helix-turn-helix domain-containing protein	NA
UHGV-0141458_16	eggNOG-mapper	411471.SUBVAR_07015	NA	NA
UHGV-0141458_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141458_16	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0141458_16	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0141458_17	UniRef90	UniRef90_UPI0019671B18	transcriptional regulator	NA
UHGV-0141458_17	eggNOG-mapper	929506.CbC4_1187	NA	NA
UHGV-0141458_17	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0141458_22	PHROG	phrog_310	transposase	integration and excision
UHGV-0141458_22	UniRef90	UniRef90_A0A6N8H399	MerR family transcriptional regulator	NA
UHGV-0141458_22	eggNOG-mapper	411471.SUBVAR_07010	Mu transposase, C-terminal	NA
UHGV-0141458_22	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0141458_22	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0141458_22	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0141458_22	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0141458_23	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0141458_23	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0141458_23	UniRef90	UniRef90_A0A6N8H4X2	ATP-binding protein	NA
UHGV-0141458_23	eggNOG-mapper	411471.SUBVAR_07009	AAA domain	NA
UHGV-0141458_23	Pfam	PF13401	AAA domain	AAA_22
UHGV-0141458_23	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0141458_25	PHROG	phrog_5671	NA	unknown function
UHGV-0141458_25	eggNOG-mapper	293826.Amet_0399	NA	NA
UHGV-0141458_26	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0141458_26	UniRef90	UniRef90_D1PRH7	Putative bacteriophage Mu Gam like protein	NA
UHGV-0141458_26	eggNOG-mapper	411471.SUBVAR_07006	Bacteriophage Mu Gam like protein	NA
UHGV-0141458_26	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0141458_26	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-0141458_26	Structural annotation	PF07352, COG4396	NA	NA
UHGV-0141458_28	PHROG	phrog_286	NA	unknown function
UHGV-0141458_28	UniRef90	UniRef90_A0A6N8H086	Regulatory protein GemA	NA
UHGV-0141458_28	eggNOG-mapper	411471.SUBVAR_07005	NA	NA
UHGV-0141458_28	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0141458_28	Structural annotation	PF06252	NA	NA
UHGV-0141458_29	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-0141458_29	UniRef90	UniRef90_A0A6N8H2N1	DNA-binding protein	NA
UHGV-0141458_29	eggNOG-mapper	411471.SUBVAR_07004	Mor transcription activator	NA
UHGV-0141458_29	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0141458_29	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0141458_29	Structural annotation	PF08765, COG5566	NA	NA
UHGV-0141458_30	PHROG	phrog_462	lipoprotein	other
UHGV-0141458_30	eggNOG-mapper	411471.SUBVAR_07003	NA	NA
UHGV-0141458_31	PHROG	phrog_25462	NA	unknown function
UHGV-0141458_31	UniRef90	UniRef90_A0A6N8H1D3	Type VI secretion protein	NA
UHGV-0141458_31	eggNOG-mapper	742733.HMPREF9469_02885	NA	NA
UHGV-0141458_31	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0141458_32	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0141458_32	UniRef90	UniRef90_A0A6N8H2N8	NA	NA
UHGV-0141458_32	eggNOG-mapper	411471.SUBVAR_07001	NA	NA
UHGV-0141458_32	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0141458_32	Structural annotation	PF11985	NA	NA
UHGV-0141458_33	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0141458_33	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0141458_33	UniRef90	UniRef90_A0A6N8H0F4	NGN domain-containing protein	NA
UHGV-0141458_33	eggNOG-mapper	411471.SUBVAR_07000	Transcription termination factor nusG	NA
UHGV-0141458_33	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0141458_33	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0141458_33	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0141458_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0141458_35	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0141458_35	UniRef90	UniRef90_A0A6N8H4Y1	PBSX family phage terminase large subunit	NA
UHGV-0141458_35	eggNOG-mapper	411471.SUBVAR_06998	Phage terminase, large subunit, PBSX family	NA
UHGV-0141458_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0141458_35	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0141458_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0141458_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0141458_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0141458_37	PHROG	phrog_533	portal protein	head and packaging
UHGV-0141458_37	UniRef90	UniRef90_D1PRG7	Putative phage minor capsid protein	NA
UHGV-0141458_37	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-0141458_37	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0141458_38	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0141458_38	UniRef90	UniRef90_UPI00196795ED	phage minor capsid protein	NA
UHGV-0141458_38	eggNOG-mapper	411471.SUBVAR_06995	NA	NA
UHGV-0141458_38	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0141458_38	COG	COG2369	NA	NA
UHGV-0141458_38	Structural annotation	PF06152, PF18825	NA	NA
UHGV-0141458_41	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0141458_41	UniRef90	UniRef90_A0A4R1QTK7	Minor structural protein GP20	NA
UHGV-0141458_41	eggNOG-mapper	411471.SUBVAR_06994	Phage minor structural protein GP20	NA
UHGV-0141458_41	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0141458_41	Structural annotation	PF06810	NA	NA
UHGV-0141458_42	PHROG	phrog_422	major head protein	head and packaging
UHGV-0141458_42	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0141458_42	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0141458_45	Structural annotation	PF20536	NA	NA
UHGV-0141458_46	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0141458_46	UniRef90	UniRef90_UPI001967B4B3	minor capsid protein	NA
UHGV-0141458_46	eggNOG-mapper	999411.HMPREF1092_03318	Minor capsid protein	NA
UHGV-0141458_46	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0141458_46	Structural annotation	PF11114	NA	NA
UHGV-0141458_47	PHROG	phrog_3266	tail completion	connector
UHGV-0141458_47	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0141458_47	Structural annotation	PF08873	NA	NA
UHGV-0141458_48	PHROG	phrog_3099	NA	unknown function
UHGV-0141458_48	eggNOG-mapper	411471.SUBVAR_06936	NA	NA
UHGV-0141458_48	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0141458_49	PHROG	phrog_11299	NA	unknown function
UHGV-0141458_49	eggNOG-mapper	665956.HMPREF1032_03059	NA	NA
UHGV-0141458_49	Structural annotation	PF10666	NA	NA
UHGV-0141458_50	PHROG	phrog_706	NA	unknown function
UHGV-0141458_50	UniRef90	UniRef90_UPI0013141117	Gp15 family bacteriophage protein	NA
UHGV-0141458_50	eggNOG-mapper	665956.HMPREF1032_03058	Bacteriophage Gp15 protein	NA
UHGV-0141458_50	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0141458_50	Structural annotation	PF06854	NA	NA
UHGV-0141458_51	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0141458_51	eggNOG-mapper	665956.HMPREF1032_03628	domain protein	NA
UHGV-0141458_51	COG	COG1511	NA	NA
UHGV-0141458_52	PHROG	phrog_1194	NA	unknown function
UHGV-0141458_52	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0141458_52	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0141458_53	PHROG	phrog_13879	NA	unknown function
UHGV-0141458_53	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0141458_53	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0141458_54	PHROG	phrog_18725	NA	unknown function
UHGV-0141458_54	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0141458_56	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0141458_56	Structural annotation	PF10651	NA	NA
UHGV-0141458_57	PHROG	phrog_17147	NA	unknown function
UHGV-0141458_57	eggNOG-mapper	657322.FPR_27150	NA	NA
UHGV-0141458_58	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0141458_58	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0141458_58	UniRef90	UniRef90_A0A348T010	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0141458_58	eggNOG-mapper	657322.FPR_27160	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0141458_58	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0141458_58	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0141458_60	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-0141458_60	PHROG	phrog_14988	peptidase	other
UHGV-0141458_60	UniRef90	UniRef90_A0A2V2FF85	Peptidase M23	NA
UHGV-0141458_60	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-0141458_60	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0141458_60	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0141458_60	Structural annotation	PF01551, NF040883, COG0739	NA	NA