UHGV-0141473

Genome information

Genome length 13,852 bps

CDS count 18

Completeness 99.73% (high-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-0141473
vOTU ID	vOTU-012646
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_425582
BioSample	SAMN05826955
Country	Estonia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.73% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.28
Jumbo phage	No

Genome content
Genome length	13,852 bps
GC content	37.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	18
CDS density	94.56%
Average CDS length	732.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0141473_4	Structural annotation	PF07288, MF_01553, NF010188, COG5503	NA	NA
UHGV-0141473_6	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0141473_6	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0141473_6	UniRef90	UniRef90_A0A2Z4GUK5	DNA polymerase	NA
UHGV-0141473_6	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0141473_7	Structural annotation	PF14902	NA	NA
UHGV-0141473_8	Structural annotation	PF17427	NA	NA
UHGV-0141473_9	PHROG	phrog_2150	terminase	head and packaging
UHGV-0141473_9	UniRef90	UniRef90_A0A2Z4GUD4	DNA encapsidation protein	NA
UHGV-0141473_9	eggNOG-mapper	10747.Q38007_BPCP1	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0141473_9	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0141473_9	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0141473_11	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0141473_11	Structural annotation	PF08239, COG4991	NA	NA
UHGV-0141473_13	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0141473_13	UniRef90	UniRef90_A0A843GUF8	Ig-like domain repeat protein	NA
UHGV-0141473_13	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0141473_14	Structural annotation	PF20934	NA	NA
UHGV-0141473_15	PHROG	phrog_11037	NA	unknown function
UHGV-0141473_15	UniRef90	UniRef90_A0A2Z4GUC1	Peptidoglycan hydrolase	NA
UHGV-0141473_15	eggNOG-mapper	1071073.KI530536_gene1254	Lysin motif	NA
UHGV-0141473_15	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0141473_15	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0141473_15	COG	COG1388	LysM repeat	NA
UHGV-0141473_15	Structural annotation	PF18013	NA	NA
UHGV-0141473_16	PHROG	phrog_2038	upper collar connector	connector
UHGV-0141473_16	UniRef90	UniRef90_A0A2Z4GUB7	Upper collar protein	NA
UHGV-0141473_16	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0141473_16	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0141473_16	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA