UHGV-0141494

Genome information

Genome length 39,767 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9577

Prediction confidence Confident

Genome information
Genome ID	UHGV-0141494
vOTU ID	vOTU-078757
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_434269
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	16.26%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9577
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.22
Jumbo phage	No

Genome content
Genome length	39,767 bps
GC content	38.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	88.97%
Average CDS length	634.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0141494_3	PHROG	phrog_1914	NA	unknown function
UHGV-0141494_3	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0141494_3	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0141494_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0141494_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0141494_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0141494_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0141494_4	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-0141494_4	eggNOG-mapper	411463.EUBVEN_00115	Helix-turn-helix domain	NA
UHGV-0141494_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141494_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0141494_4	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0141494_5	UniRef90	UniRef90_UPI000E51362F	helix-turn-helix domain-containing protein	NA
UHGV-0141494_5	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0141494_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0141494_5	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0141494_10	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0141494_10	Structural annotation	PF15597	NA	NA
UHGV-0141494_12	KOfam	K07039	NA	NA
UHGV-0141494_12	eggNOG-mapper	1268068.PG5_50620	SEC-C Motif Domain Protein	NA
UHGV-0141494_12	Pfam	PF02810	SEC-C motif	SEC-C
UHGV-0141494_12	COG	COG3012	NA	NA
UHGV-0141494_13	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0141494_14	PHROG	phrog_6058	NA	unknown function
UHGV-0141494_14	Structural annotation	NF033787	NA	NA
UHGV-0141494_16	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0141494_16	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0141494_16	UniRef90	UniRef90_UPI000E47CAB6	ParB/RepB/Spo0J family partition protein	NA
UHGV-0141494_16	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-0141494_16	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0141494_16	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0141494_16	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0141494_16	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0141494_17	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0141494_17	PHROG	phrog_5696	NA	unknown function
UHGV-0141494_17	UniRef90	UniRef90_UPI001B3C9C54	N-6 DNA methylase	NA
UHGV-0141494_17	eggNOG-mapper	397291.C804_06560	N-6 DNA Methylase	NA
UHGV-0141494_17	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0141494_17	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0141494_17	Structural annotation	COG0286	NA	NA
UHGV-0141494_18	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0141494_18	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0141494_18	eggNOG-mapper	394503.Ccel_3305	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0141494_18	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-0141494_18	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0141494_18	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0141494_19	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0141494_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0141494_19	UniRef90	UniRef90_UPI001B3C6404	tyrosine-type recombinase/integrase	NA
UHGV-0141494_19	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0141494_19	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0141494_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0141494_19	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0141494_19	Structural annotation	PF00589, PF13495, MF_01808, TIGR02224, COG4973	NA	NA
UHGV-0141494_20	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0141494_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0141494_20	UniRef90	UniRef90_A0A374N9T4	XRE family transcriptional regulator	NA
UHGV-0141494_20	eggNOG-mapper	997346.HMPREF9374_1157	sequence-specific DNA binding	NA
UHGV-0141494_20	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0141494_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141494_20	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0141494_20	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0141494_21	PHROG	phrog_24518	NA	unknown function
UHGV-0141494_21	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0141494_22	PHROG	phrog_824	NA	unknown function
UHGV-0141494_22	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0141494_22	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0141494_22	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0141494_22	Structural annotation	PF08774	NA	NA
UHGV-0141494_24	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0141494_24	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-0141494_24	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0141494_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0141494_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0141494_24	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0141494_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0141494_26	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0141494_26	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0141494_27	eggNOG-mapper	394503.Ccel_3053	NA	NA
UHGV-0141494_27	Structural annotation	TIGR01636	NA	NA
UHGV-0141494_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0141494_28	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0141494_28	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0141494_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0141494_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0141494_29	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0141494_29	UniRef90	UniRef90_A0A7G8TDZ0	P27 family phage terminase small subunit	NA
UHGV-0141494_29	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-0141494_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0141494_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0141494_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0141494_30	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0141494_30	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0141494_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0141494_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0141494_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0141494_30	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0141494_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0141494_31	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0141494_31	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0141494_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0141494_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0141494_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0141494_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0141494_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0141494_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0141494_32	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0141494_32	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0141494_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0141494_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0141494_32	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0141494_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0141494_33	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0141494_33	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0141494_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0141494_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0141494_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0141494_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0141494_34	PHROG	phrog_749	NA	unknown function
UHGV-0141494_34	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0141494_34	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0141494_35	PHROG	phrog_19734	NA	unknown function
UHGV-0141494_35	UniRef90	UniRef90_UPI00057FE645	phage head closure protein	NA
UHGV-0141494_35	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0141494_35	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0141494_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0141494_36	eggNOG-mapper	879305.HMPREF9290_0134	NA	NA
UHGV-0141494_36	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0141494_37	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0141494_37	eggNOG-mapper	1235792.C808_00089	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0141494_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0141494_37	Structural annotation	TIGR01725	NA	NA
UHGV-0141494_38	PHROG	phrog_88	major tail protein	tail
UHGV-0141494_38	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0141494_38	eggNOG-mapper	1235790.C805_00875	phage major tail protein, phi13 family	NA
UHGV-0141494_38	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0141494_38	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0141494_39	Structural annotation	PF11836	NA	NA
UHGV-0141494_40	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0141494_40	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0141494_40	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-0141494_40	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0141494_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0141494_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0141494_40	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0141494_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0141494_41	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0141494_41	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0141494_41	COG	COG4722	Phage-related protein YomH	NA
UHGV-0141494_41	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0141494_42	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0141494_42	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-0141494_42	eggNOG-mapper	1462527.CCDM010000003_gene3730	gp58-like protein	NA
UHGV-0141494_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0141494_42	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0141494_42	COG	COG1511	NA	NA
UHGV-0141494_42	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0141494_43	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0141494_43	eggNOG-mapper	220664.PFL_2007	Phage tail-collar fibre protein	NA
UHGV-0141494_43	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0141494_43	Structural annotation	PF10651, PF15432, PF08931, TIGR03711	NA	NA
UHGV-0141494_45	UniRef90	UniRef90_A0A374MYZ3	Branched-chain amino acid ABC transporter permease	NA
UHGV-0141494_45	eggNOG-mapper	1007096.BAGW01000032_gene1580	NA	NA
UHGV-0141494_46	PHROG	phrog_881	holin	lysis
UHGV-0141494_46	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0141494_46	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0141494_46	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0141494_46	Structural annotation	PF16938	NA	NA
UHGV-0141494_47	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0141494_47	PHROG	phrog_435	endolysin	lysis
UHGV-0141494_47	UniRef90	UniRef90_A0A373KFY8	SH3b domain-containing protein	NA
UHGV-0141494_47	eggNOG-mapper	1203606.HMPREF1526_01931	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0141494_47	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0141494_47	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0141494_47	Structural annotation	PF01520, PF18342, NF038140, COG0860, COG4991	NA	NA
UHGV-0141494_48	KOfam	K07493	K07493; putative transposase	NA
UHGV-0141494_48	PHROG	phrog_3035	transposase	integration and excision
UHGV-0141494_48	UniRef90	UniRef90_UPI001A9A4124	transposase	NA
UHGV-0141494_48	eggNOG-mapper	742733.HMPREF9469_00248	COG COG3328 Transposase and inactivated derivatives	NA
UHGV-0141494_48	Pfam	PF00872	Transposase, Mutator family	Transposase_mut
UHGV-0141494_48	COG	COG3328	Transposase (or an inactivated derivative)	NA
UHGV-0141494_49	UniRef90	UniRef90_A0A2N0UVG0	CBM26 domain-containing protein	NA
UHGV-0141494_49	eggNOG-mapper	33905.BTHE_1898	Belongs to the glycosyl hydrolase 31 family	NA
UHGV-0141494_49	Pfam	PF16738	Starch-binding module 26	CBM26
UHGV-0141494_49	COG	COG1501	Alpha-glucosidase/xylosidase, GH31 family	NA
UHGV-0141494_50	PHROG	phrog_35892	NA	unknown function
UHGV-0141494_50	UniRef90	UniRef90_A0A374UN72	Leucine-rich repeat domain-containing protein	NA
UHGV-0141494_50	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0141494_50	COG	COG3209	NA	NA
UHGV-0141494_51	eggNOG-mapper	33905.BTHE_1898	Belongs to the glycosyl hydrolase 31 family	NA
UHGV-0141494_51	COG	COG1501	Alpha-glucosidase/xylosidase, GH31 family	NA
UHGV-0141494_52	KOfam	K17256	IGFALS, ALS; insulin-like growth factor-binding protein complex acid labile subunit	NA
UHGV-0141494_52	PHROG	phrog_35892	NA	unknown function
UHGV-0141494_52	UniRef90	UniRef90_R5DSQ1	Ig-like domain-containing surface protein	NA
UHGV-0141494_52	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0141494_52	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0141494_53	KOfam	K17256	IGFALS, ALS; insulin-like growth factor-binding protein complex acid labile subunit	NA
UHGV-0141494_53	PHROG	phrog_18805	NA	unknown function
UHGV-0141494_53	UniRef90	UniRef90_R5DWB5	Putative cell wall binding repeat-containing domain protein	NA
UHGV-0141494_53	eggNOG-mapper	877418.ATWV01000012_gene870	regulation of response to stimulus	NA
UHGV-0141494_53	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0141494_53	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0141494_53	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0141494_55	PHROG	phrog_3675	NA	unknown function
UHGV-0141494_55	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0141494_55	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0141494_55	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0141494_55	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0141494_56	UniRef90	UniRef90_R5DU92	HisKA_7TM domain-containing protein	NA
UHGV-0141494_56	eggNOG-mapper	411461.DORFOR_00052	NA	NA
UHGV-0141494_56	Pfam	PF16927	N-terminal 7TM region of histidine kinase	HisKA_7TM