UHGV-0141602

Genome information

Genome length 56,401 bps

CDS count 96

Completeness 98.68% (high-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0141602
vOTU ID	vOTU-063314
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_436131
BioSample	SAMN06016361
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.68% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.05
Jumbo phage	No

Genome content
Genome length	56,401 bps
GC content	39.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	96
CDS density	87.39%
Average CDS length	517.97 bps
tRNA count	6
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0141602_1	KOfam	K03090	sigB; RNA polymerase sigma-B factor	NA
UHGV-0141602_1	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0141602_1	UniRef90	UniRef90_A0A7G9FS75	RNA polymerase sigma factor	NA
UHGV-0141602_1	eggNOG-mapper	397287.C807_00459	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-0141602_1	Pfam	PF04539	Sigma-70 region 3	Sigma70_r3
UHGV-0141602_1	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0141602_1	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0141602_1	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0141602_1	Structural annotation	PF04545, PF04539, MF_00962, NF006071, COG1191	NA	NA
UHGV-0141602_4	PHROG	phrog_21718	NA	unknown function
UHGV-0141602_4	eggNOG-mapper	397290.C810_01326	NA	NA
UHGV-0141602_5	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0141602_6	PHROG	phrog_16490	NA	unknown function
UHGV-0141602_6	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0141602_8	PHROG	phrog_20016	NA	unknown function
UHGV-0141602_8	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0141602_8	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0141602_8	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0141602_9	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0141602_10	PHROG	phrog_1233	NA	unknown function
UHGV-0141602_10	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0141602_11	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0141602_11	UniRef90	UniRef90_UPI001D05F100	ORF6N domain-containing protein	NA
UHGV-0141602_11	eggNOG-mapper	658655.HMPREF0988_00907	ORF6N domain	NA
UHGV-0141602_11	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0141602_11	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0141602_13	UniRef90	UniRef90_UPI00174DD543	CopG family transcriptional regulator	NA
UHGV-0141602_13	eggNOG-mapper	445971.ANASTE_00673	NA	NA
UHGV-0141602_13	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0141602_16	eggNOG-mapper	411902.CLOBOL_05754	NA	NA
UHGV-0141602_16	Structural annotation	PF02151	NA	NA
UHGV-0141602_19	eggNOG-mapper	397290.C810_01351	NA	NA
UHGV-0141602_19	Structural annotation	COG5302	NA	NA
UHGV-0141602_21	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-0141602_21	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0141602_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0141602_22	PHROG	phrog_589	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0141602_22	UniRef90	UniRef90_UPI001D1201FC	HNH endonuclease	NA
UHGV-0141602_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0141602_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0141602_22	Structural annotation	PF14279	NA	NA
UHGV-0141602_25	Structural annotation	PF20556	NA	NA
UHGV-0141602_28	UniRef90	UniRef90_A0A8D9PG29	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0141602_29	UniRef90	UniRef90_UPI001D08650D	Com family DNA-binding transcriptional regulator	NA
UHGV-0141602_29	Pfam	PF10122	NA	Mu-like_Com
UHGV-0141602_29	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0141602_31	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0141602_31	UniRef90	UniRef90_A0A352SH30	Terminase_6C domain-containing protein	NA
UHGV-0141602_31	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0141602_31	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0141602_31	COG	COG5410	NA	NA
UHGV-0141602_31	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0141602_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0141602_32	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0141602_32	eggNOG-mapper	411459.RUMOBE_01043	NA	NA
UHGV-0141602_32	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0141602_33	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0141602_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0141602_34	UniRef90	UniRef90_UPI001D0761B7	phage portal protein	NA
UHGV-0141602_34	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0141602_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0141602_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0141602_35	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0141602_36	PHROG	phrog_909	major head protein	head and packaging
UHGV-0141602_36	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0141602_36	Structural annotation	PF02924	NA	NA
UHGV-0141602_37	PHROG	phrog_29	major head protein	head and packaging
UHGV-0141602_37	UniRef90	UniRef90_A0A2S6HJ16	Major capsid protein E	NA
UHGV-0141602_37	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0141602_37	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0141602_37	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0141602_37	Structural annotation	PF03864, PF18316, MF_04133, NF041162, COG4653	NA	NA
UHGV-0141602_39	PHROG	phrog_4105	NA	unknown function
UHGV-0141602_39	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0141602_40	PHROG	phrog_1129	holin	lysis
UHGV-0141602_40	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0141602_40	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0141602_40	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0141602_40	Structural annotation	PF06946	NA	NA
UHGV-0141602_41	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0141602_42	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0141602_42	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0141602_42	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0141602_43	Structural annotation	PF05657	NA	NA
UHGV-0141602_44	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-0141602_44	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0141602_45	PHROG	phrog_36112	NA	unknown function
UHGV-0141602_45	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0141602_45	Structural annotation	PF16478	NA	NA
UHGV-0141602_47	KOfam	K07273	acm; lysozyme	NA
UHGV-0141602_47	PHROG	phrog_291	endolysin	lysis
UHGV-0141602_47	UniRef90	UniRef90_A0A7U9QWG5	Autolytic lysozyme	NA
UHGV-0141602_47	eggNOG-mapper	97139.C824_02634	Glycosyl hydrolases family 25	NA
UHGV-0141602_47	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0141602_47	COG	COG1388	LysM repeat	NA
UHGV-0141602_47	Structural annotation	PF01183, PF01471, COG3757	NA	NA
UHGV-0141602_48	PHROG	phrog_28918	NA	unknown function
UHGV-0141602_48	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0141602_48	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0141602_49	PHROG	phrog_1194	NA	unknown function
UHGV-0141602_49	Pfam	PF20458	NA	DUF6711
UHGV-0141602_49	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0141602_50	PHROG	phrog_18190	NA	unknown function
UHGV-0141602_50	UniRef90	UniRef90_UPI001D0767E1	gp58-like family protein	NA
UHGV-0141602_50	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-0141602_50	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0141602_52	PHROG	phrog_17196	kinase	other
UHGV-0141602_52	eggNOG-mapper	1235790.C805_00090	NA	NA
UHGV-0141602_52	Structural annotation	PF13619	NA	NA
UHGV-0141602_53	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0141602_53	UniRef90	UniRef90_UPI001D074CCD	helix-turn-helix domain-containing protein	NA
UHGV-0141602_53	eggNOG-mapper	411463.EUBVEN_01507	NA	NA
UHGV-0141602_53	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0141602_53	Structural annotation	PF13443, PF00717, MF_00015, NF041951, TIGR02228, COG3655	NA	NA
UHGV-0141602_55	UniRef90	UniRef90_A0A1Q9J746	HTH cro/C1-type domain-containing protein	NA
UHGV-0141602_55	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0141602_55	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0141602_56	UniRef90	UniRef90_UPI0015934173	helix-turn-helix domain-containing protein	NA
UHGV-0141602_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141602_56	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0141602_56	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0141602_57	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0141602_57	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0141602_57	UniRef90	UniRef90_A0A8E5Y3Q1	Phage antirepressor	NA
UHGV-0141602_57	eggNOG-mapper	641107.CDLVIII_0866	Phage antirepressor protein	NA
UHGV-0141602_57	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0141602_57	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0141602_57	COG	COG3617	Prophage antirepressor	NA
UHGV-0141602_57	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0141602_58	AcrCatalog	cluster_63593	NA	NA
UHGV-0141602_59	PHROG	phrog_19890	NA	unknown function
UHGV-0141602_59	UniRef90	UniRef90_A0A352SFF8	SLT domain-containing protein	NA
UHGV-0141602_59	eggNOG-mapper	1410650.JHWL01000003_gene2854	lytic transglycosylase activity	NA
UHGV-0141602_59	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0141602_59	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0141602_59	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0141602_60	PHROG	phrog_22292	NA	unknown function
UHGV-0141602_63	UniRef90	UniRef90_UPI001D091C1C	sporulation initiation factor Spo0A C-terminal domain-containing protein	NA
UHGV-0141602_63	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0141602_63	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0141602_63	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0141602_64	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0141602_64	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0141602_64	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0141602_64	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0141602_64	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0141602_64	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0141602_66	Structural annotation	PF02237, MF_00257, NF037951, COG4013	NA	NA
UHGV-0141602_68	Structural annotation	PF13973, PF04319, PF08962	NA	NA
UHGV-0141602_69	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0141602_69	UniRef90	UniRef90_UPI001D08E6D4	phage recombination protein Bet	NA
UHGV-0141602_69	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0141602_69	Pfam	PF03837	RecT family	RecT
UHGV-0141602_69	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0141602_69	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0141602_69	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0141602_70	PHROG	phrog_25456	NA	unknown function
UHGV-0141602_71	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0141602_71	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0141602_71	UniRef90	UniRef90_A0A352SIH6	Lactamase_B domain-containing protein	NA
UHGV-0141602_71	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0141602_71	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0141602_71	dbAPIS	APIS058	NA	NA
UHGV-0141602_71	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0141602_71	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0141602_72	PHROG	phrog_6724	NA	unknown function
UHGV-0141602_72	eggNOG-mapper	1463936.JOJI01000043_gene7935	NA	NA
UHGV-0141602_74	PHROG	phrog_19106	NA	unknown function
UHGV-0141602_74	UniRef90	UniRef90_UPI001D086F0C	GIY-YIG nuclease family protein	NA
UHGV-0141602_74	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0141602_74	Structural annotation	TIGR01453	NA	NA
UHGV-0141602_77	PHROG	phrog_31253	NA	unknown function
UHGV-0141602_79	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0141602_79	UniRef90	UniRef90_A0A352SFU9	DNA replication protein (Fragment)	NA
UHGV-0141602_79	eggNOG-mapper	1140001.I571_01717	DnaD domain protein	NA
UHGV-0141602_79	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0141602_79	Structural annotation	TIGR01714	NA	NA
UHGV-0141602_82	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0141602_82	eggNOG-mapper	397290.C810_05184	NA	NA
UHGV-0141602_82	Structural annotation	PF09038	NA	NA
UHGV-0141602_83	UniRef90	UniRef90_UPI001D064D4E	NA	NA
UHGV-0141602_83	Pfam	PF04448	NA	DUF551
UHGV-0141602_83	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0141602_84	eggNOG-mapper	1304866.K413DRAFT_4602	NA	NA
UHGV-0141602_85	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-0141602_86	PHROG	phrog_20593	NA	unknown function
UHGV-0141602_88	UniRef90	UniRef90_UPI001BAF0D80	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0141602_88	eggNOG-mapper	1410650.JHWL01000037_gene617	sulfate reduction	NA
UHGV-0141602_88	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0141602_89	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0141602_89	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0141602_89	UniRef90	UniRef90_UPI001D09885E	site-specific DNA-methyltransferase	NA
UHGV-0141602_89	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0141602_89	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0141602_89	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0141602_89	COG	COG0863	DNA modification methylase	NA
UHGV-0141602_89	Structural annotation	PF01555, MF_00786, NF010253, COG0863	NA	NA
UHGV-0141602_90	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0141602_90	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0141602_90	UniRef90	UniRef90_UPI000462F5E4	site-specific DNA-methyltransferase	NA
UHGV-0141602_90	eggNOG-mapper	888049.HMPREF8578_0283	DNA methylase	NA
UHGV-0141602_90	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0141602_90	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0141602_90	COG	COG0863	DNA modification methylase	NA
UHGV-0141602_90	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0141602_91	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0141602_91	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0141602_91	UniRef90	UniRef90_A0A173RED2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0141602_91	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0141602_91	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0141602_91	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0141602_91	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0141602_91	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0141602_91	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0141602_92	eggNOG-mapper	887325.HMPREF0381_0090	NA	NA
UHGV-0141602_93	PHROG	phrog_8538	NA	unknown function
UHGV-0141602_93	eggNOG-mapper	1121121.KB894312_gene3170	NA	NA
UHGV-0141602_94	UniRef90	UniRef90_UPI001D05EDA5	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0141602_94	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0141602_94	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0141602_96	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0141602_96	PHROG	phrog_95	integrase	integration and excision
UHGV-0141602_96	UniRef90	UniRef90_UPI001D084942	recombinase family protein	NA
UHGV-0141602_96	eggNOG-mapper	246199.CUS_6803	NA	NA
UHGV-0141602_96	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0141602_96	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0141602_96	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0141602_96	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA