UHGV-0141617

Genome information

Genome length 40,790 bps

CDS count 58

Completeness 94.44% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0141617
vOTU ID	vOTU-014761
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_419975
BioSample	NA
Country	Finland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.44% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.36
Jumbo phage	No

Genome content
Genome length	40,790 bps
GC content	51.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	94.21%
Average CDS length	664.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0141617_1	PHROG	phrog_2262	transposase	integration and excision
UHGV-0141617_1	UniRef90	UniRef90_UPI001F25628F	IS5 family transposase	NA
UHGV-0141617_1	eggNOG-mapper	571.MC52_04510	ISSoEn1, terminal inverted repeat	NA
UHGV-0141617_1	Pfam	PF13737	Transposase DDE domain	DDE_Tnp_1_5
UHGV-0141617_1	NCBIFam	NF033579.1	IS5 family transposase	NA
UHGV-0141617_1	COG	COG3039	Transposase and inactivated derivatives, IS5 family	NA
UHGV-0141617_2	PHROG	phrog_7836	NA	unknown function
UHGV-0141617_3	PHROG	phrog_6518	tail fiber protein	tail
UHGV-0141617_3	UniRef90	UniRef90_A0A8D6DP71	Tail_spike_N domain-containing protein	NA
UHGV-0141617_3	eggNOG-mapper	1124654.G9L6E4_9CAUD	outer membrane	NA
UHGV-0141617_3	Pfam	PF18668	Tail spike TSP1/Gp66 receptor binding N-terminal domain	Tail_spike_N
UHGV-0141617_4	PHROG	phrog_494	NA	unknown function
UHGV-0141617_4	UniRef90	UniRef90_A0A8D6MTQ0	Membrane protein	NA
UHGV-0141617_4	eggNOG-mapper	637910.ROD_47421	NA	NA
UHGV-0141617_4	Pfam	PF07125	NA	DUF1378
UHGV-0141617_5	PHROG	phrog_214	Rz-like spanin	lysis
UHGV-0141617_5	UniRef90	UniRef90_A0A837LF18	Exported protein from phage origin	NA
UHGV-0141617_5	eggNOG-mapper	1224318.DT73_00385	NA	NA
UHGV-0141617_6	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0141617_6	PHROG	phrog_7	endolysin	lysis
UHGV-0141617_6	UniRef90	UniRef90_R4YG48	Lysozyme	NA
UHGV-0141617_6	eggNOG-mapper	40631.LYS_BPN15	Phage lysozyme	NA
UHGV-0141617_6	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0141617_6	HAMAP	MF_04110	Endolysin	NA
UHGV-0141617_6	Structural annotation	MF_04136, COG3772	NA	NA
UHGV-0141617_7	PHROG	phrog_20	holin	lysis
UHGV-0141617_7	UniRef90	UniRef90_A0A378CL51	Lysis S family protein	NA
UHGV-0141617_7	eggNOG-mapper	199310.c1561	Lysis protein S homolog from lambdoid prophage	NA
UHGV-0141617_7	Pfam	PF04971	Bacteriophage P21 holin S	Phage_holin_2_1
UHGV-0141617_8	UniRef90	UniRef90_A0A090IGS7	Putative exported protein	NA
UHGV-0141617_8	eggNOG-mapper	520709.F985_02989	NA	NA
UHGV-0141617_9	PHROG	phrog_14503	membrane associated protein	moron, auxiliary metabolic gene and host takeover
UHGV-0141617_9	UniRef90	UniRef90_A0A8G2D4U0	Transmembrane anchored protein	NA
UHGV-0141617_10	PHROG	phrog_3870	NA	unknown function
UHGV-0141617_10	UniRef90	UniRef90_A0A5D3JKI3	Rap1a domain-containing protein	NA
UHGV-0141617_10	eggNOG-mapper	571.MC52_15375	NA	NA
UHGV-0141617_10	Pfam	PF18602	Rap1a immunity proteins	Rap1a
UHGV-0141617_11	PHROG	phrog_684	virion structural protein	head and packaging
UHGV-0141617_11	UniRef90	UniRef90_A0A3Q9JH11	LEM domain-containing protein	NA
UHGV-0141617_11	eggNOG-mapper	399741.Spro_3875	NA	NA
UHGV-0141617_12	PHROG	phrog_3003	NA	unknown function
UHGV-0141617_12	eggNOG-mapper	1115515.EV102420_06_00450	NA	NA
UHGV-0141617_13	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0141617_13	PHROG	phrog_1044	endolysin	lysis
UHGV-0141617_13	UniRef90	UniRef90_A0A7Z7WS99	Bacteriophage protein	NA
UHGV-0141617_13	eggNOG-mapper	1115515.EV102420_06_00440	Transglycosylase SLT domain	NA
UHGV-0141617_13	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0141617_13	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0141617_13	Structural annotation	PF01464, NF008631, COG0741	NA	NA
UHGV-0141617_14	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0141617_14	Structural annotation	PF11056	NA	NA
UHGV-0141617_15	PHROG	phrog_4177	NA	unknown function
UHGV-0141617_15	Structural annotation	PF11039, MF_02210, NF007527, COG1670	NA	NA
UHGV-0141617_16	PHROG	phrog_4566	NA	unknown function
UHGV-0141617_17	PHROG	phrog_4497	NA	unknown function
UHGV-0141617_18	PHROG	phrog_376	tail protein	tail
UHGV-0141617_18	UniRef90	UniRef90_A0A157S702	NA	NA
UHGV-0141617_18	eggNOG-mapper	1344012.ATMI01000056_gene1743	NA	NA
UHGV-0141617_18	Structural annotation	PF11134, MF_00923, NF008351, COG5276	NA	NA
UHGV-0141617_19	PHROG	phrog_394	tail protein	tail
UHGV-0141617_19	UniRef90	UniRef90_A0A1B0Z200	Tail tubular protein A	NA
UHGV-0141617_19	eggNOG-mapper	1344012.ATMI01000056_gene1742	NA	NA
UHGV-0141617_20	PHROG	phrog_427	NA	unknown function
UHGV-0141617_20	UniRef90	UniRef90_UPI00132F6B00	Ig-like domain-containing protein	NA
UHGV-0141617_20	eggNOG-mapper	1235689.K4NYY6_9CAUD	NA	NA
UHGV-0141617_20	Pfam	PF21190	Bbp16	Bbp16
UHGV-0141617_21	PHROG	phrog_212	major head protein	head and packaging
UHGV-0141617_21	UniRef90	UniRef90_A0A345BQX7	Major capsid protein	NA
UHGV-0141617_21	eggNOG-mapper	1235689.K4PA76_9CAUD	viral capsid	NA
UHGV-0141617_21	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0141617_21	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0141617_22	PHROG	phrog_458	protease	other
UHGV-0141617_22	UniRef90	UniRef90_A0A348DD63	Peptidase	NA
UHGV-0141617_23	PHROG	phrog_4437	NA	unknown function
UHGV-0141617_23	UniRef90	UniRef90_A0A898ES54	GTP-binding protein	NA
UHGV-0141617_24	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0141617_24	UniRef90	UniRef90_A0A8F5S0L3	Head-tail connector protein	NA
UHGV-0141617_24	eggNOG-mapper	1344012.ATMI01000052_gene1938	Bacteriophage head to tail connecting protein	NA
UHGV-0141617_24	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0141617_24	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0141617_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0141617_25	PHROG	phrog_2472	NA	unknown function
UHGV-0141617_25	UniRef90	UniRef90_A0A7Z7SA83	Phage terminase large subunit	NA
UHGV-0141617_25	eggNOG-mapper	1408428.JNJP01000030_gene963	Terminase RNaseH-like domain	NA
UHGV-0141617_25	COG	COG5323	Phage large terminase packaging protein	NA
UHGV-0141617_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0141617_26	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0141617_26	UniRef90	UniRef90_A0A1V0LG81	DNA-packaging protein	NA
UHGV-0141617_26	eggNOG-mapper	348058.B9UDJ9_9CAUD	Pfam:GP3_package	NA
UHGV-0141617_26	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0141617_27	PHROG	phrog_4483	NA	unknown function
UHGV-0141617_27	UniRef90	UniRef90_A0A7U4GYY9	Spermidine/putrescine ABC transporter substrate-binding protein	NA
UHGV-0141617_28	PHROG	phrog_4508	NA	unknown function
UHGV-0141617_28	UniRef90	UniRef90_A0A7U9D320	Phenylalanyl-tRNA synthetase subunit beta chain	NA
UHGV-0141617_29	PHROG	phrog_717	NA	unknown function
UHGV-0141617_29	eggNOG-mapper	633.DJ40_1328	NA	NA
UHGV-0141617_29	dbAPIS	APIS002	Vs.4 antagonized cGAS signaling by binding tightly to cGAMP (dissociation constant of approximately 30 nM) and sequestering it; Bioinformatic analyses identified 198 homologues of Vs.4 in diverse phages; belongs to PHROG 717.	NA
UHGV-0141617_30	PHROG	phrog_4536	NA	unknown function
UHGV-0141617_30	UniRef90	UniRef90_UPI001E3EB19F	helix-turn-helix domain-containing protein	NA
UHGV-0141617_30	Pfam	PF09339	IclR helix-turn-helix domain	HTH_IclR
UHGV-0141617_32	PHROG	phrog_1588	NA	unknown function
UHGV-0141617_32	UniRef90	UniRef90_A0A2L0KH05	NA	NA
UHGV-0141617_32	eggNOG-mapper	520999.PROVALCAL_03967	NA	NA
UHGV-0141617_32	Pfam	PF16786	Recombination enhancement, RecA-dependent nuclease	RecA_dep_nuc
UHGV-0141617_32	Structural annotation	PF16786	NA	NA
UHGV-0141617_33	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0141617_33	UniRef90	UniRef90_A0A1Q8YNN0	NA	NA
UHGV-0141617_33	eggNOG-mapper	1080067.BAZH01000011_gene678	NA	NA
UHGV-0141617_33	Pfam	PF07105	NA	DUF1367
UHGV-0141617_33	Structural annotation	PF07105	NA	NA
UHGV-0141617_34	PHROG	phrog_340	NA	unknown function
UHGV-0141617_34	eggNOG-mapper	1115515.EV102420_14_01080	NA	NA
UHGV-0141617_35	PHROG	phrog_536	transcriptional regulator	transcription regulation
UHGV-0141617_35	eggNOG-mapper	215158.Q858C6_BPE15	NA	NA
UHGV-0141617_36	PHROG	phrog_14273	NA	unknown function
UHGV-0141617_37	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0141617_37	UniRef90	UniRef90_R4YHL4	HNHc domain-containing protein	NA
UHGV-0141617_37	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0141617_37	Structural annotation	PF13392, COG3415	NA	NA
UHGV-0141617_38	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0141617_38	UniRef90	UniRef90_A0A140NS95	NA	NA
UHGV-0141617_38	eggNOG-mapper	293826.Amet_2600	NA	NA
UHGV-0141617_39	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0141617_39	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0141617_39	UniRef90	UniRef90_A0A1Q8YNF8	Adenine methylase	NA
UHGV-0141617_39	eggNOG-mapper	1115515.EV102420_06_00040	Belongs to the MT-A70-like family	NA
UHGV-0141617_39	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0141617_39	Pfam	PF05063	MT-A70	MT-A70
UHGV-0141617_39	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0141617_39	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0141617_40	PHROG	phrog_2936	NA	unknown function
UHGV-0141617_41	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0141617_41	PHROG	phrog_25613	NA	unknown function
UHGV-0141617_41	UniRef90	UniRef90_A0A0H3HEC4	HTH_ParB domain-containing protein	NA
UHGV-0141617_41	eggNOG-mapper	573.JG24_10860	NA	NA
UHGV-0141617_41	Pfam	PF17762	HTH domain found in ParB protein	HTH_ParB
UHGV-0141617_41	Structural annotation	PF02195, PF08535, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0141617_42	PHROG	phrog_1105	DNA polymerase III theta subunit	DNA, RNA and nucleotide metabolism
UHGV-0141617_42	eggNOG-mapper	1080067.BAZH01000011_gene676	NA	NA
UHGV-0141617_42	Structural annotation	PF11686, NF008207	NA	NA
UHGV-0141617_43	PHROG	phrog_4183	NA	unknown function
UHGV-0141617_43	eggNOG-mapper	1080067.BAZH01000011_gene675	NA	NA
UHGV-0141617_43	Structural annotation	PF01475, TIGR03433, COG1695	NA	NA
UHGV-0141617_44	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0141617_44	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0141617_44	UniRef90	UniRef90_A0A7Z7SA69	DNA helicase	NA
UHGV-0141617_44	eggNOG-mapper	1080067.BAZH01000011_gene674	DnaB-like helicase N terminal domain	NA
UHGV-0141617_44	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0141617_44	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0141617_44	COG	COG0305	Replicative DNA helicase	NA
UHGV-0141617_44	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0141617_45	PHROG	phrog_1347	NA	unknown function
UHGV-0141617_45	UniRef90	UniRef90_UPI0010333446	replication protein RepO	NA
UHGV-0141617_45	eggNOG-mapper	1080067.BAZH01000011_gene673	Helix-turn-helix domain	NA
UHGV-0141617_45	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0141617_46	PHROG	phrog_2465	NA	unknown function
UHGV-0141617_46	UniRef90	UniRef90_UPI00101F3756	adenylate cyclase	NA
UHGV-0141617_46	eggNOG-mapper	598467.BrE312_2720	NA	NA
UHGV-0141617_47	PHROG	phrog_163	CII-like transcriptional activator	transcription regulation
UHGV-0141617_47	UniRef90	UniRef90_UPI00103483C3	toxin YdaT family protein	NA
UHGV-0141617_47	eggNOG-mapper	1080067.BAZH01000011_gene671	Putative bacterial toxin ydaT	NA
UHGV-0141617_47	Pfam	PF06254	Bacterial toxin ydaT	YdaT_toxin
UHGV-0141617_47	Structural annotation	PF06254	NA	NA
UHGV-0141617_48	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-0141617_48	UniRef90	UniRef90_A0A8D6IGW7	HTH cro/C1-type domain-containing protein	NA
UHGV-0141617_48	eggNOG-mapper	1080067.BAZH01000011_gene670	Helix-turn-helix	NA
UHGV-0141617_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141617_49	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0141617_49	UniRef90	UniRef90_A0A4R0HRJ9	Helix-turn-helix domain-containing protein	NA
UHGV-0141617_49	eggNOG-mapper	1115515.EV102420_14_01040	Helix-turn-helix XRE-family like proteins	NA
UHGV-0141617_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141617_49	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0141617_49	Structural annotation	PF21291, MF_00535, NF007257, COG1396	NA	NA
UHGV-0141617_50	PHROG	phrog_2479	NA	unknown function
UHGV-0141617_50	eggNOG-mapper	1080067.BAZH01000011_gene669	NA	NA
UHGV-0141617_51	PHROG	phrog_36277	NA	unknown function
UHGV-0141617_53	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0141617_53	PHROG	phrog_2489	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0141617_53	UniRef90	UniRef90_A0A486VJE1	Exodeoxyribonuclease VIII	NA
UHGV-0141617_53	eggNOG-mapper	1080067.BAZH01000011_gene667	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	NA
UHGV-0141617_53	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0141617_53	Structural annotation	PF06630, NF007259, COG4712	NA	NA
UHGV-0141617_54	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0141617_54	UniRef90	UniRef90_A0A378CJG6	Gp157 family protein	NA
UHGV-0141617_54	eggNOG-mapper	35703.DQ02_08995	Siphovirus Gp157	NA
UHGV-0141617_54	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0141617_54	Structural annotation	PF05565	NA	NA
UHGV-0141617_55	PHROG	phrog_2482	NA	unknown function
UHGV-0141617_55	eggNOG-mapper	35703.DQ02_09000	NA	NA
UHGV-0141617_56	PHROG	phrog_27062	NA	unknown function
UHGV-0141617_56	eggNOG-mapper	82996.sch_09085	NA	NA
UHGV-0141617_57	PHROG	phrog_1266	excisionase	integration and excision
UHGV-0141617_57	UniRef90	UniRef90_A0A3P2MH44	NA	NA
UHGV-0141617_57	eggNOG-mapper	1127516.H9C153_9CAUD	NA	NA
UHGV-0141617_57	Pfam	PF13986	NA	DUF4224
UHGV-0141617_57	Structural annotation	PF13986	NA	NA
UHGV-0141617_58	KOfam	K21039	int; enterobacteria phage integrase [EC:2.7.7.- 3.1.-.-]	NA
UHGV-0141617_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0141617_58	UniRef90	UniRef90_A0A378CKE6	Site-specific tyrosine recombinase XerC	NA
UHGV-0141617_58	eggNOG-mapper	343509.SG1221	Belongs to the 'phage' integrase family	NA
UHGV-0141617_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0141617_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0141617_58	Structural annotation	PF00589, PF12834, PF12167, MF_01807, NF001399, NF041908, COG4974	NA	NA