UHGV-0141649

Genome information

Genome length 28,850 bps

CDS count 41

Completeness 78.17% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0141649
vOTU ID	vOTU-030036
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_408754
BioSample	SAMN05414909
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.44
Jumbo phage	No

Genome content
Genome length	28,850 bps
GC content	62.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	94.91%
Average CDS length	670.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0141649_1	UniRef90	UniRef90_K1TUF3	Protein tyrosine/serine phosphatase (Fragment)	NA
UHGV-0141649_3	PHROG	phrog_3558	tail protein	tail
UHGV-0141649_3	UniRef90	UniRef90_J9CXI4	Phage minor structural protein (Fragment)	NA
UHGV-0141649_3	eggNOG-mapper	1111121.HMPREF1247_1242	Prophage endopeptidase tail	NA
UHGV-0141649_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0141649_3	COG	COG4926	Phage-related protein	NA
UHGV-0141649_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0141649_5	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0141649_5	UniRef90	UniRef90_A0A837KZW3	PblA	NA
UHGV-0141649_5	eggNOG-mapper	665950.HMPREF1025_02522	Phage tail tape measure protein, TP901 family	NA
UHGV-0141649_5	COG	COG1511	NA	NA
UHGV-0141649_6	PHROG	phrog_1633	NA	unknown function
UHGV-0141649_6	UniRef90	UniRef90_UPI0015CCAF51	NA	NA
UHGV-0141649_6	eggNOG-mapper	1121864.OMO_02160	NA	NA
UHGV-0141649_6	Structural annotation	PF17318	NA	NA
UHGV-0141649_7	PHROG	phrog_1526	NA	unknown function
UHGV-0141649_7	eggNOG-mapper	1321820.HMPREF1983_00926	NA	NA
UHGV-0141649_8	PHROG	phrog_117	major tail protein	tail
UHGV-0141649_8	UniRef90	UniRef90_A0A1Q9YGH5	Phage tail protein	NA
UHGV-0141649_8	eggNOG-mapper	706433.HMPREF9430_01260	domain, Protein	NA
UHGV-0141649_8	COG	COG5492	NA	NA
UHGV-0141649_8	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0141649_9	PHROG	phrog_123	tail terminator	connector
UHGV-0141649_9	UniRef90	UniRef90_A0A139NAV0	Phage-associated protein	NA
UHGV-0141649_9	eggNOG-mapper	875454.BAEW01000017_gene1591	NA	NA
UHGV-0141649_9	Structural annotation	PF06141	NA	NA
UHGV-0141649_10	PHROG	phrog_387	neck protein	connector
UHGV-0141649_11	PHROG	phrog_501	head closure Hc1	connector
UHGV-0141649_11	eggNOG-mapper	665950.HMPREF1025_02528	NA	NA
UHGV-0141649_11	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0141649_13	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0141649_13	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0141649_13	Pfam	PF09355	NA	Phage_Gp19
UHGV-0141649_13	Structural annotation	PF09355	NA	NA
UHGV-0141649_15	PHROG	phrog_544	major head protein	head and packaging
UHGV-0141649_15	UniRef90	UniRef90_UPI0018A92457	phage capsid protein	NA
UHGV-0141649_15	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0141649_15	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0141649_16	PHROG	phrog_3760	head scaffolding protein	head and packaging
UHGV-0141649_16	UniRef90	UniRef90_A0A396KYN2	NA	NA
UHGV-0141649_16	eggNOG-mapper	1123263.AUKY01000068_gene501	NA	NA
UHGV-0141649_16	Pfam	PF14265	NA	DUF4355
UHGV-0141649_16	Structural annotation	PF14265	NA	NA
UHGV-0141649_17	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0141649_17	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0141649_17	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0141649_17	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0141649_18	PHROG	phrog_104	portal protein	head and packaging
UHGV-0141649_18	UniRef90	UniRef90_UPI0009847372	phage portal protein	NA
UHGV-0141649_18	eggNOG-mapper	1123263.AUKY01000112_gene2059	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0141649_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0141649_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0141649_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0141649_19	UniRef90	UniRef90_UPI001D0087E2	terminase large subunit	NA
UHGV-0141649_19	eggNOG-mapper	1410630.JNKP01000001_gene1822	phage terminase, large subunit	NA
UHGV-0141649_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0141649_19	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0141649_20	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0141649_20	UniRef90	UniRef90_UPI001BEA8267	P27 family phage terminase small subunit	NA
UHGV-0141649_20	eggNOG-mapper	1232446.BAIE02000002_gene822	Phage terminase, small subunit	NA
UHGV-0141649_20	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0141649_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0141649_21	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0141649_21	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0141649_21	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0141649_21	Structural annotation	PF01844	NA	NA
UHGV-0141649_22	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0141649_22	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-0141649_22	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0141649_22	Structural annotation	PF14205	NA	NA
UHGV-0141649_23	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0141649_23	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0141649_23	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0141649_24	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0141649_24	UniRef90	UniRef90_A0A413FXK8	NA	NA
UHGV-0141649_24	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0141649_24	Pfam	PF14359	NA	DUF4406
UHGV-0141649_24	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0141649_24	Structural annotation	PF14359, MF_03036, COG3613	NA	NA
UHGV-0141649_26	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0141649_26	PHROG	phrog_27290	NA	unknown function
UHGV-0141649_26	UniRef90	UniRef90_G4L1G7	HTH cro/C1-type domain-containing protein	NA
UHGV-0141649_26	eggNOG-mapper	693746.OBV_19860	ParB-like nuclease domain	NA
UHGV-0141649_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0141649_26	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0141649_26	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0141649_27	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0141649_27	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0141649_27	UniRef90	UniRef90_A0A3D4EI23	ParA family protein	NA
UHGV-0141649_27	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0141649_27	Pfam	PF13614	AAA domain	AAA_31
UHGV-0141649_27	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0141649_27	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0141649_29	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0141649_29	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0141649_29	UniRef90	UniRef90_A0A3D1V9Y4	DNA helicase	NA
UHGV-0141649_29	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0141649_29	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0141649_29	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0141649_29	COG	COG0305	Replicative DNA helicase	NA
UHGV-0141649_29	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0141649_30	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0141649_30	UniRef90	UniRef90_UPI001F33ADD3	helix-turn-helix domain-containing protein	NA
UHGV-0141649_30	eggNOG-mapper	693746.OBV_30130	NA	NA
UHGV-0141649_30	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0141649_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0141649_30	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0141649_31	UniRef90	UniRef90_A0A3D1V9Y1	HTH_17 domain-containing protein	NA
UHGV-0141649_31	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0141649_31	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0141649_31	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0141649_31	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-0141649_32	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0141649_32	UniRef90	UniRef90_A0A3D1VA62	Transcriptional regulator	NA
UHGV-0141649_32	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-0141649_32	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0141649_32	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0141649_32	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0141649_33	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0141649_33	PHROG	phrog_7241	transcriptional regulator	transcription regulation
UHGV-0141649_33	UniRef90	UniRef90_A0A3D1VD81	XRE family transcriptional regulator	NA
UHGV-0141649_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141649_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0141649_33	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0141649_34	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0141649_34	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0141649_34	UniRef90	UniRef90_A0A3D1VDF3	LexA family transcriptional regulator	NA
UHGV-0141649_34	eggNOG-mapper	428125.CLOLEP_01832	DNA-binding helix-turn-helix protein	NA
UHGV-0141649_34	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0141649_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141649_34	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0141649_34	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0141649_34	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0141649_35	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0141649_35	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0141649_35	UniRef90	UniRef90_A0A3D1VB11	Exonuclease domain-containing protein	NA
UHGV-0141649_35	eggNOG-mapper	1243664.CAVL020000010_gene4579	3' exoribonuclease, RNase T-like	NA
UHGV-0141649_35	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0141649_35	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0141649_35	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0141649_35	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0141649_35	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0141649_36	eggNOG-mapper	1232453.BAIF02000097_gene2773	EXOIII	NA
UHGV-0141649_36	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0141649_37	KOfam	K14059	int; integrase	NA
UHGV-0141649_37	PHROG	phrog_1	integrase	integration and excision
UHGV-0141649_37	UniRef90	UniRef90_A0A3D1VH24	Site-specific integrase	NA
UHGV-0141649_37	eggNOG-mapper	1297617.JPJD01000022_gene1664	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0141649_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0141649_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0141649_37	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0141649_38	PHROG	phrog_1129	holin	lysis
UHGV-0141649_38	UniRef90	UniRef90_A0A2N0KEV2	Enolase	NA
UHGV-0141649_38	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0141649_38	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0141649_39	PHROG	phrog_4105	NA	unknown function
UHGV-0141649_39	eggNOG-mapper	592026.GCWU0000282_003290	NA	NA
UHGV-0141649_40	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0141649_40	PHROG	phrog_5182	endolysin	lysis
UHGV-0141649_40	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0141649_40	eggNOG-mapper	397288.C806_00777	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0141649_40	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0141649_40	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0141649_40	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0141649_40	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0141649_41	eggNOG-mapper	794903.OPIT5_20595	protein tyrosine phosphatase activity	NA
UHGV-0141649_41	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-0141649_41	COG	COG2365	Protein tyrosine/serine phosphatase Oca4	NA