UHGV-0141682

Genome information

Genome length 34,326 bps

CDS count 56

Completeness 85.12% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0141682
vOTU ID	vOTU-023100
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_427080
BioSample	NA
Country	Finland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.73
Jumbo phage	No

Genome content
Genome length	34,326 bps
GC content	56.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	93.48%
Average CDS length	576.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0141682_1	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0141682_1	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0141682_1	UniRef90	UniRef90_A0A6A8VI04	Terminase small subunit	NA
UHGV-0141682_1	eggNOG-mapper	292414.TM1040_0800	Terminase small subunit	NA
UHGV-0141682_1	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0141682_1	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0141682_1	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0141682_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0141682_2	PHROG	phrog_10250	NA	unknown function
UHGV-0141682_2	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0141682_2	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0141682_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0141682_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0141682_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0141682_2	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0141682_3	PHROG	phrog_64	portal protein	head and packaging
UHGV-0141682_3	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-0141682_3	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0141682_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0141682_3	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0141682_4	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0141682_4	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0141682_4	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0141682_4	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0141682_4	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0141682_4	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0141682_4	COG	COG2369	NA	NA
UHGV-0141682_4	Structural annotation	PF03496, PF04233, MF_04142, NF040688, TIGR01641, COG2369	NA	NA
UHGV-0141682_6	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0141682_6	UniRef90	UniRef90_UPI001411BC8C	HK97 gp10 family phage protein	NA
UHGV-0141682_6	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0141682_6	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0141682_6	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0141682_6	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0141682_7	Structural annotation	PF18152	NA	NA
UHGV-0141682_8	UniRef90	UniRef90_A0A3E0B009	Minor structural protein GP20	NA
UHGV-0141682_8	Structural annotation	PF06810	NA	NA
UHGV-0141682_9	PHROG	phrog_544	major head protein	head and packaging
UHGV-0141682_9	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0141682_9	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0141682_9	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0141682_10	PHROG	phrog_1236	head protein	head and packaging
UHGV-0141682_11	PHROG	phrog_17977	NA	unknown function
UHGV-0141682_11	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0141682_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0141682_12	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0141682_12	Structural annotation	PF11367	NA	NA
UHGV-0141682_13	PHROG	phrog_885	major tail protein	tail
UHGV-0141682_13	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0141682_13	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0141682_13	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0141682_14	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0141682_16	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0141682_16	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0141682_16	COG	COG1511	NA	NA
UHGV-0141682_16	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0141682_17	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0141682_18	PHROG	phrog_13879	NA	unknown function
UHGV-0141682_18	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0141682_18	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0141682_19	Structural annotation	PF00354	NA	NA
UHGV-0141682_20	eggNOG-mapper	1226322.HMPREF1545_02881	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0141682_20	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0141682_22	UniRef90	UniRef90_A0A8J6JAX9	XkdX family protein	NA
UHGV-0141682_22	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0141682_23	PHROG	phrog_37604	NA	unknown function
UHGV-0141682_23	eggNOG-mapper	1232443.BAIA02000078_gene10	NA	NA
UHGV-0141682_24	PHROG	phrog_1129	holin	lysis
UHGV-0141682_24	UniRef90	UniRef90_A0A8J6J3M3	Phage holin family protein	NA
UHGV-0141682_24	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0141682_24	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0141682_24	Structural annotation	PF06946	NA	NA
UHGV-0141682_26	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0141682_26	PHROG	phrog_435	endolysin	lysis
UHGV-0141682_26	UniRef90	UniRef90_UPI001C107E48	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0141682_26	eggNOG-mapper	1410668.JNKC01000001_gene1675	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0141682_26	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0141682_26	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0141682_26	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0141682_26	Structural annotation	PF01520, PF09992, PF01471, MF_00562, TIGR02883, COG0860, COG4632, COG3409	NA	NA
UHGV-0141682_27	UniRef90	UniRef90_U2R3E6	KORA domain-containing protein	NA
UHGV-0141682_27	Structural annotation	PF16509, MF_00674, NF008895, COG2739	NA	NA
UHGV-0141682_29	PHROG	phrog_3754	NA	unknown function
UHGV-0141682_29	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0141682_30	PHROG	phrog_21718	NA	unknown function
UHGV-0141682_30	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-0141682_30	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0141682_31	PHROG	phrog_22984	NA	unknown function
UHGV-0141682_32	PHROG	phrog_16490	NA	unknown function
UHGV-0141682_32	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0141682_33	PHROG	phrog_20016	NA	unknown function
UHGV-0141682_33	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0141682_33	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0141682_33	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0141682_34	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0141682_35	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0141682_36	KOfam	K14059	int; integrase	NA
UHGV-0141682_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0141682_36	UniRef90	UniRef90_UPI0018A8CCD8	site-specific integrase	NA
UHGV-0141682_36	eggNOG-mapper	1408437.JNJN01000039_gene380	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0141682_36	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0141682_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0141682_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0141682_36	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0141682_37	UniRef90	UniRef90_A0A3D1I232	zinc_ribbon_2 domain-containing protein	NA
UHGV-0141682_37	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0141682_38	PHROG	phrog_87	metallo-protease	other
UHGV-0141682_38	UniRef90	UniRef90_A0A174DB16	Metallopeptidase immA	NA
UHGV-0141682_38	eggNOG-mapper	1294142.CINTURNW_0291	IrrE N-terminal-like domain	NA
UHGV-0141682_38	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0141682_38	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0141682_38	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0141682_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0141682_39	UniRef90	UniRef90_A0A174FRM3	Helix-turn-helix domain	NA
UHGV-0141682_39	eggNOG-mapper	294382.Q5YAA4_9CAUD	sequence-specific DNA binding	NA
UHGV-0141682_39	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0141682_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0141682_40	UniRef90	UniRef90_A0A412EXN2	XRE family transcriptional regulator	NA
UHGV-0141682_40	eggNOG-mapper	394503.Ccel_3076	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0141682_40	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0141682_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0141682_40	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0141682_43	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0141682_45	Structural annotation	PF13560	NA	NA
UHGV-0141682_48	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0141682_48	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0141682_48	UniRef90	UniRef90_UPI001959E3D8	AAA family ATPase	NA
UHGV-0141682_48	eggNOG-mapper	1203606.HMPREF1526_00309	nuclear chromosome segregation	NA
UHGV-0141682_48	Pfam	PF13476	AAA domain	AAA_23
UHGV-0141682_48	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0141682_48	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0141682_49	PHROG	phrog_862	NA	unknown function
UHGV-0141682_49	UniRef90	UniRef90_A0A2P9FIG4	NA	NA
UHGV-0141682_49	eggNOG-mapper	1203606.HMPREF1526_00310	NA	NA
UHGV-0141682_49	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0141682_50	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0141682_50	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0141682_50	UniRef90	UniRef90_UPI00195A5026	MBL fold metallo-hydrolase	NA
UHGV-0141682_50	eggNOG-mapper	1203606.HMPREF1526_00311	Metallo-beta-lactamase superfamily	NA
UHGV-0141682_50	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0141682_50	dbAPIS	APIS058	NA	NA
UHGV-0141682_50	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0141682_50	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0141682_51	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0141682_51	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0141682_51	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0141682_52	PHROG	phrog_1029	NA	unknown function
UHGV-0141682_52	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-0141682_52	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0141682_53	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0141682_53	UniRef90	UniRef90_A0A1C6D5S6	NA	NA
UHGV-0141682_53	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0141682_53	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0141682_53	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0141682_54	Structural annotation	PF11417	NA	NA
UHGV-0141682_56	PHROG	phrog_4433	NA	unknown function
UHGV-0141682_56	UniRef90	UniRef90_UPI00045B9709	collagen-like protein	NA
UHGV-0141682_56	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-0141682_56	COG	COG5164	Transcription elongation factor SPT5	NA