UHGV-0141747

Genome information

Genome length 42,371 bps

CDS count 56

Completeness 85.79% (medium-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0141747
vOTU ID	vOTU-025659
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_404371
BioSample	SAMN05414925
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.77
Jumbo phage	No

Genome content
Genome length	42,371 bps
GC content	47.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	94.22%
Average CDS length	717.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0141747_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0141747_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0141747_1	UniRef90	UniRef90_A0A6N3C1X5	LexA repressor	NA
UHGV-0141747_1	eggNOG-mapper	699218.HMPREF0889_0317	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0141747_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141747_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0141747_1	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0141747_1	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0141747_2	UniRef90	UniRef90_UPI001D00C35A	helix-turn-helix domain-containing protein	NA
UHGV-0141747_2	eggNOG-mapper	1273103.NM10_03301	NA	NA
UHGV-0141747_2	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0141747_3	Pfam	PF20063	NA	DUF6462
UHGV-0141747_4	PHROG	phrog_14367	NA	unknown function
UHGV-0141747_4	UniRef90	UniRef90_A0A8E4BQW3	LysM domain-containing protein	NA
UHGV-0141747_4	eggNOG-mapper	742743.HMPREF9453_00591	LysM domain protein	NA
UHGV-0141747_4	Pfam	PF01476	LysM domain	LysM
UHGV-0141747_4	COG	COG1388	LysM repeat	NA
UHGV-0141747_4	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0141747_6	PHROG	phrog_674	NA	unknown function
UHGV-0141747_6	UniRef90	UniRef90_UPI0019577DA3	NA	NA
UHGV-0141747_6	Pfam	PF07083	NA	DUF1351
UHGV-0141747_6	Structural annotation	PF07083	NA	NA
UHGV-0141747_7	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0141747_7	UniRef90	UniRef90_U7UBL1	AAA domain protein	NA
UHGV-0141747_7	eggNOG-mapper	910314.HMPREF9220_0634	AAA domain	NA
UHGV-0141747_7	Pfam	PF13479	AAA domain	AAA_24
UHGV-0141747_7	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0141747_8	PHROG	phrog_2698	NA	unknown function
UHGV-0141747_8	eggNOG-mapper	497964.CfE428DRAFT_1297	NA	NA
UHGV-0141747_8	Pfam	PF05037	NA	DUF669
UHGV-0141747_8	Structural annotation	PF05037, NF007495	NA	NA
UHGV-0141747_9	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0141747_9	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0141747_9	UniRef90	UniRef90_A0A354WRE6	DNA primase	NA
UHGV-0141747_9	eggNOG-mapper	910314.HMPREF9220_0631	Primase C terminal 2 (PriCT-2)	NA
UHGV-0141747_9	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0141747_9	Pfam	PF13481	AAA domain	AAA_25
UHGV-0141747_9	COG	COG3598	RecA-family ATPase	NA
UHGV-0141747_9	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0141747_10	PHROG	phrog_2698	NA	unknown function
UHGV-0141747_13	KOfam	K03530	hupB; DNA-binding protein HU-beta	NA
UHGV-0141747_13	PHROG	phrog_379	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0141747_13	UniRef90	UniRef90_UPI000D3CAAD8	HU family DNA-binding protein	NA
UHGV-0141747_13	eggNOG-mapper	1280666.ATVS01000013_gene784	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	NA
UHGV-0141747_13	Pfam	PF00216	Bacterial DNA-binding protein	Bac_DNA_binding
UHGV-0141747_13	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-0141747_13	Structural annotation	PF00216, MF_00381, TIGR00988, COG0776	NA	NA
UHGV-0141747_14	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0141747_14	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0141747_14	UniRef90	UniRef90_UPI0014759F4E	DNA cytosine methyltransferase	NA
UHGV-0141747_14	eggNOG-mapper	585503.HMPREF7545_1724	Cytosine-specific methyltransferase	NA
UHGV-0141747_14	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0141747_14	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0141747_14	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0141747_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0141747_14	Structural annotation	PF00145, MF_00812, NF007772, COG0270	NA	NA
UHGV-0141747_15	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0141747_15	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-0141747_15	UniRef90	UniRef90_UPI0018E9D1D5	DNA cytosine methyltransferase	NA
UHGV-0141747_15	eggNOG-mapper	585503.HMPREF7545_1724	Cytosine-specific methyltransferase	NA
UHGV-0141747_15	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0141747_15	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0141747_21	PHROG	phrog_16126	NA	unknown function
UHGV-0141747_21	eggNOG-mapper	665950.HMPREF1025_01978	NA	NA
UHGV-0141747_22	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0141747_22	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0141747_22	UniRef90	UniRef90_A0A173ZVR9	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0141747_22	eggNOG-mapper	1314.HKU360_00240	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0141747_22	Pfam	PF00692	dUTPase	dUTPase
UHGV-0141747_22	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0141747_22	Structural annotation	PF00692, MF_00116, NF010561, COG0756	NA	NA
UHGV-0141747_23	PHROG	phrog_11947	NA	unknown function
UHGV-0141747_24	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0141747_24	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0141747_24	eggNOG-mapper	1123250.KB908417_gene653	NA	NA
UHGV-0141747_24	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0141747_26	PHROG	phrog_236	nucleotide kinase	other
UHGV-0141747_26	UniRef90	UniRef90_UPI00197D6BE4	NA	NA
UHGV-0141747_26	Pfam	PF11753	NA	DUF3310
UHGV-0141747_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0141747_27	eggNOG-mapper	706434.HMPREF9429_00383	NA	NA
UHGV-0141747_27	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0141747_28	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0141747_28	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0141747_29	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0141747_29	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0141747_29	UniRef90	UniRef90_E4LA55	Phage terminase large subunit (GpA)	NA
UHGV-0141747_29	eggNOG-mapper	910314.HMPREF9220_0622	Phage terminase large subunit (GpA)	NA
UHGV-0141747_29	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0141747_29	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0141747_29	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0141747_29	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0141747_31	PHROG	phrog_21	portal protein	head and packaging
UHGV-0141747_31	UniRef90	UniRef90_E4LA53	Phage portal protein, lambda family	NA
UHGV-0141747_31	eggNOG-mapper	910314.HMPREF9220_0620	Phage portal protein, lambda family	NA
UHGV-0141747_31	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0141747_31	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0141747_31	COG	COG5511	Phage capsid protein	NA
UHGV-0141747_31	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0141747_32	KOfam	K06904	NA	NA
UHGV-0141747_32	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0141747_32	UniRef90	UniRef90_E4LA52	Caudovirus prohead protease	NA
UHGV-0141747_32	eggNOG-mapper	910314.HMPREF9220_0619	Caudovirus prohead protease	NA
UHGV-0141747_32	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0141747_32	COG	COG3087	Cell division protein FtsN	NA
UHGV-0141747_32	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0141747_33	PHROG	phrog_122	head decoration	head and packaging
UHGV-0141747_33	UniRef90	UniRef90_A0A3E5AQC9	NA	NA
UHGV-0141747_33	eggNOG-mapper	411464.DESPIG_00879	NA	NA
UHGV-0141747_33	Pfam	PF09956	NA	DUF2190
UHGV-0141747_33	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0141747_33	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0141747_34	Structural annotation	PF13856, COG5614	NA	NA
UHGV-0141747_35	eggNOG-mapper	910314.HMPREF9220_0616	NA	NA
UHGV-0141747_35	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0141747_36	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0141747_37	PHROG	phrog_290	minor tail protein	tail
UHGV-0141747_37	UniRef90	UniRef90_UPI001032C993	phage tail tube protein	NA
UHGV-0141747_37	eggNOG-mapper	910314.HMPREF9220_0614	NA	NA
UHGV-0141747_37	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0141747_37	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0141747_40	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-0141747_40	PHROG	phrog_30973	NA	unknown function
UHGV-0141747_40	UniRef90	UniRef90_E4LA45	NlpC/P60 domain-containing protein	NA
UHGV-0141747_40	eggNOG-mapper	910314.HMPREF9220_0612	nuclear chromosome segregation	NA
UHGV-0141747_40	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0141747_40	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0141747_41	eggNOG-mapper	1009370.ALO_04658	NA	NA
UHGV-0141747_41	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0141747_42	PHROG	phrog_18	minor tail protein	tail
UHGV-0141747_42	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-0141747_42	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-0141747_42	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0141747_42	COG	COG4672	Phage tail protein	NA
UHGV-0141747_42	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0141747_43	KOfam	K13694	mepS, spr; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]	NA
UHGV-0141747_43	PHROG	phrog_329	minor tail protein	tail
UHGV-0141747_43	UniRef90	UniRef90_A0A380N793	NlpC/P60 family	NA
UHGV-0141747_43	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-0141747_43	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0141747_43	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0141747_43	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-0141747_44	KOfam	K06882	NA	NA
UHGV-0141747_44	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0141747_44	UniRef90	UniRef90_A0A1H8XA87	Phage-related protein, tail component	NA
UHGV-0141747_44	eggNOG-mapper	910314.HMPREF9220_0608	cellulase activity	NA
UHGV-0141747_44	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0141747_44	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0141747_44	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0141747_44	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0141747_44	Structural annotation	PF13550, PF16323, PF16389, PF16893, PF14451, PF08329, PF07495, MF_04116, MF_00460, NF040662, NF010681, NF006231, NF012201, COG4733, COG3401, COG2914	NA	NA
UHGV-0141747_45	PHROG	phrog_37852	NA	unknown function
UHGV-0141747_45	UniRef90	UniRef90_A0A4R1SCQ5	Phage-related tail fiber protein	NA
UHGV-0141747_45	eggNOG-mapper	936573.HMPREF1147_2055	NA	NA
UHGV-0141747_47	KOfam	K14059	int; integrase	NA
UHGV-0141747_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0141747_47	UniRef90	UniRef90_A0A3B9DV66	Recombinase XerC	NA
UHGV-0141747_47	eggNOG-mapper	742743.HMPREF9453_00550	Phage integrase family	NA
UHGV-0141747_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0141747_47	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0141747_47	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0141747_48	eggNOG-mapper	1005058.UMN179_01642	NA	NA
UHGV-0141747_48	Structural annotation	PF21611	NA	NA
UHGV-0141747_49	PHROG	phrog_4105	NA	unknown function
UHGV-0141747_49	eggNOG-mapper	742743.HMPREF9453_00545	NA	NA
UHGV-0141747_50	Structural annotation	PF10841	NA	NA
UHGV-0141747_51	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0141747_51	PHROG	phrog_5867	endolysin	lysis
UHGV-0141747_51	UniRef90	UniRef90_A0A3B9DVP3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0141747_51	eggNOG-mapper	592028.GCWU000321_01397	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0141747_51	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0141747_51	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0141747_51	Structural annotation	MF_04111	NA	NA
UHGV-0141747_53	PHROG	phrog_10797	NA	unknown function
UHGV-0141747_53	UniRef90	UniRef90_A0A1B3X2S2	Glycoprotease	NA
UHGV-0141747_53	eggNOG-mapper	742743.HMPREF9453_00542	NA	NA
UHGV-0141747_53	Structural annotation	PF20132	NA	NA