UHGV-0141761

Genome information

Genome length 39,828 bps

CDS count 51

Completeness 99.44% (high-quality)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-0141761
vOTU ID	vOTU-069203
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_442513
BioSample	SAMN06010519
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.44% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.33
Jumbo phage	No

Genome content
Genome length	39,828 bps
GC content	45.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	94.01%
Average CDS length	736.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0141761_1	KOfam	K14059	int; integrase	NA
UHGV-0141761_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0141761_1	UniRef90	UniRef90_A0A380N5C5	Tyrosine recombinase XerS	NA
UHGV-0141761_1	eggNOG-mapper	1128111.HMPREF0870_01795	Belongs to the 'phage' integrase family	NA
UHGV-0141761_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0141761_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0141761_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0141761_2	Structural annotation	PF15028, COG5342	NA	NA
UHGV-0141761_3	PHROG	phrog_20936	NA	unknown function
UHGV-0141761_3	UniRef90	UniRef90_A0A134BXK6	Peptidase_M78 domain-containing protein	NA
UHGV-0141761_3	eggNOG-mapper	706434.HMPREF9429_00182	NA	NA
UHGV-0141761_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0141761_3	Structural annotation	PF06114	NA	NA
UHGV-0141761_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0141761_4	UniRef90	UniRef90_A0A380N6N4	HTH cro/C1-type domain-containing protein	NA
UHGV-0141761_4	eggNOG-mapper	1128111.HMPREF0870_01792	Helix-turn-helix XRE-family like proteins	NA
UHGV-0141761_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0141761_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0141761_4	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0141761_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0141761_5	UniRef90	UniRef90_A0A380N5B8	HTH cro/C1-type domain-containing protein	NA
UHGV-0141761_5	eggNOG-mapper	1128111.HMPREF0870_01791	Helix-turn-helix XRE-family like proteins	NA
UHGV-0141761_5	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0141761_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0141761_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0141761_7	PHROG	phrog_6058	NA	unknown function
UHGV-0141761_7	Structural annotation	PF09035, NF033787	NA	NA
UHGV-0141761_9	UniRef90	UniRef90_A0A380N5Z7	HTH cro/C1-type domain-containing protein	NA
UHGV-0141761_9	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0141761_9	Structural annotation	PF01381, NF000090, COG3655	NA	NA
UHGV-0141761_11	PHROG	phrog_633	transcriptional regulator	transcription regulation
UHGV-0141761_11	eggNOG-mapper	1401067.HMPREF0872_06890	NA	NA
UHGV-0141761_11	Structural annotation	PF04703, MF_00732, NF033788, COG2345	NA	NA
UHGV-0141761_15	PHROG	phrog_18562	NA	unknown function
UHGV-0141761_15	eggNOG-mapper	1128111.HMPREF0870_01783	NA	NA
UHGV-0141761_16	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0141761_16	UniRef90	UniRef90_A0A380N7U3	Inactivated superfamily I helicase	NA
UHGV-0141761_16	eggNOG-mapper	1128111.HMPREF0870_01782	NA	NA
UHGV-0141761_16	Pfam	PF10926	NA	DUF2800
UHGV-0141761_16	COG	COG2887	RecB family exonuclease	NA
UHGV-0141761_16	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0141761_17	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0141761_17	UniRef90	UniRef90_A0A2S7YZ12	NA	NA
UHGV-0141761_17	eggNOG-mapper	1128111.HMPREF0870_01781	NA	NA
UHGV-0141761_17	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0141761_17	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0141761_18	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0141761_18	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0141761_18	UniRef90	UniRef90_A0A380N5A7	DNA polymerase I, thermostable	NA
UHGV-0141761_18	eggNOG-mapper	1128111.HMPREF0870_01780	DNA polymerase	NA
UHGV-0141761_18	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0141761_18	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0141761_18	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0141761_19	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0141761_19	UniRef90	UniRef90_A0A380N688	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0141761_19	eggNOG-mapper	1128111.HMPREF0870_01779	Virulence-associated protein E	NA
UHGV-0141761_19	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0141761_19	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0141761_19	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0141761_20	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0141761_20	UniRef90	UniRef90_A0A380N7B1	VRR-NUC domain	NA
UHGV-0141761_20	eggNOG-mapper	1128111.HMPREF0870_01778	VRR_NUC	NA
UHGV-0141761_20	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-0141761_22	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0141761_22	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0141761_22	UniRef90	UniRef90_A0A380N5Y7	SNF2 family N-terminal domain	NA
UHGV-0141761_22	eggNOG-mapper	1128111.HMPREF0870_01776	SNF2 family	NA
UHGV-0141761_22	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0141761_22	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0141761_22	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0141761_22	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0141761_22	Structural annotation	PF16203, PF04851, MF_01821, NF041790, COG0553	NA	NA
UHGV-0141761_23	PHROG	phrog_236	nucleotide kinase	other
UHGV-0141761_23	UniRef90	UniRef90_A0A380N7U2	NA	NA
UHGV-0141761_23	eggNOG-mapper	936375.HMPREF1152_1061	NA	NA
UHGV-0141761_23	Pfam	PF11753	NA	DUF3310
UHGV-0141761_23	Structural annotation	PF11753	NA	NA
UHGV-0141761_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0141761_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0141761_25	Structural annotation	PF07374, MF_00674, TIGR01636, COG1191	NA	NA
UHGV-0141761_26	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0141761_26	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0141761_26	UniRef90	UniRef90_A0A7C8GRI9	Terminase small subunit	NA
UHGV-0141761_26	eggNOG-mapper	1128111.HMPREF0870_01772	transposase activity	NA
UHGV-0141761_26	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0141761_26	Structural annotation	PF07471, COG4220	NA	NA
UHGV-0141761_27	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0141761_27	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0141761_27	UniRef90	UniRef90_A0A380N7T6	Bacteriophage tail assembly protein	NA
UHGV-0141761_27	eggNOG-mapper	1128111.HMPREF0870_01771	Phage terminase large subunit (GpA)	NA
UHGV-0141761_27	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0141761_27	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0141761_27	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0141761_27	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0141761_28	PHROG	phrog_20307	NA	unknown function
UHGV-0141761_28	UniRef90	UniRef90_F5KZM7	Conserved domain protein	NA
UHGV-0141761_28	Structural annotation	PF19645, COG1382	NA	NA
UHGV-0141761_29	PHROG	phrog_21	portal protein	head and packaging
UHGV-0141761_29	UniRef90	UniRef90_A0A380N598	Phage portal protein, lambda family	NA
UHGV-0141761_29	eggNOG-mapper	1128111.HMPREF0870_01769	Phage portal protein, lambda family	NA
UHGV-0141761_29	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0141761_29	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0141761_29	COG	COG5511	Phage capsid protein	NA
UHGV-0141761_29	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0141761_30	KOfam	K06904	NA	NA
UHGV-0141761_30	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0141761_30	UniRef90	UniRef90_A0A380N679	Mu-like prophage major head subunit gpT	NA
UHGV-0141761_30	eggNOG-mapper	1128111.HMPREF0870_01768	Caudovirus prohead protease	NA
UHGV-0141761_30	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0141761_30	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0141761_30	COG	COG3087	Cell division protein FtsN	NA
UHGV-0141761_30	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0141761_31	PHROG	phrog_122	head decoration	head and packaging
UHGV-0141761_31	UniRef90	UniRef90_UPI000C31FA0B	NA	NA
UHGV-0141761_31	eggNOG-mapper	883156.HMPREF9282_01240	NA	NA
UHGV-0141761_31	Pfam	PF09956	NA	DUF2190
UHGV-0141761_31	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0141761_31	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0141761_32	PHROG	phrog_27032	NA	unknown function
UHGV-0141761_32	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0141761_33	PHROG	phrog_222	tail protein	tail
UHGV-0141761_33	UniRef90	UniRef90_F5KZN2	Conserved domain protein	NA
UHGV-0141761_33	eggNOG-mapper	1128111.HMPREF0870_01765	NA	NA
UHGV-0141761_33	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0141761_34	PHROG	phrog_17431	NA	unknown function
UHGV-0141761_34	eggNOG-mapper	1128111.HMPREF0870_01764	NA	NA
UHGV-0141761_34	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0141761_35	PHROG	phrog_290	minor tail protein	tail
UHGV-0141761_35	UniRef90	UniRef90_UPI001E4C5382	phage tail tube protein	NA
UHGV-0141761_35	eggNOG-mapper	1128111.HMPREF0870_01763	NA	NA
UHGV-0141761_35	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0141761_35	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0141761_36	PHROG	phrog_27248	NA	unknown function
UHGV-0141761_37	PHROG	phrog_23549	NA	unknown function
UHGV-0141761_37	UniRef90	UniRef90_F5KZN6	Conserved domain protein	NA
UHGV-0141761_38	PHROG	phrog_22443	NA	unknown function
UHGV-0141761_38	UniRef90	UniRef90_A0A380N6K7	Phage-related minor tail protein	NA
UHGV-0141761_38	eggNOG-mapper	1128111.HMPREF0870_01760	Putative exonuclease SbcCD, C subunit	NA
UHGV-0141761_38	COG	COG4913	NA	NA
UHGV-0141761_38	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0141761_39	eggNOG-mapper	1009370.ALO_04658	NA	NA
UHGV-0141761_39	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0141761_40	PHROG	phrog_18	minor tail protein	tail
UHGV-0141761_40	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-0141761_40	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-0141761_40	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0141761_40	COG	COG4672	Phage tail protein	NA
UHGV-0141761_40	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0141761_41	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0141761_41	PHROG	phrog_329	minor tail protein	tail
UHGV-0141761_41	UniRef90	UniRef90_A0A380N793	NlpC/P60 family	NA
UHGV-0141761_41	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-0141761_41	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0141761_41	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0141761_41	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-0141761_42	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0141761_42	UniRef90	UniRef90_A0A380N5W7	Phage-related protein, tail component	NA
UHGV-0141761_42	eggNOG-mapper	1128111.HMPREF0870_01756	gp58-like protein	NA
UHGV-0141761_42	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0141761_42	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0141761_42	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0141761_42	COG	COG1511	NA	NA
UHGV-0141761_42	Structural annotation	PF13550, PF00041, PF09294, PF17936, PF14109, NF040662, NF041335, COG4733	NA	NA
UHGV-0141761_43	Structural annotation	PF21519	NA	NA
UHGV-0141761_45	PHROG	phrog_1084	NA	unknown function
UHGV-0141761_45	Structural annotation	PF17813, NF038186	NA	NA
UHGV-0141761_46	PHROG	phrog_22483	NA	unknown function
UHGV-0141761_46	UniRef90	UniRef90_X8H8Q8	Collagen triple helix repeat protein	NA
UHGV-0141761_46	eggNOG-mapper	1128111.HMPREF0870_01752	NA	NA
UHGV-0141761_46	Structural annotation	PF17936, COG2372	NA	NA
UHGV-0141761_47	PHROG	phrog_23091	NA	unknown function
UHGV-0141761_47	Pfam	PF03383	Caenorhabditis serpentine receptor-like protein, class xa	Serpentine_r_xa
UHGV-0141761_48	PHROG	phrog_27828	NA	unknown function
UHGV-0141761_48	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0141761_48	eggNOG-mapper	1128111.HMPREF0870_01750	NA	NA
UHGV-0141761_49	PHROG	phrog_5867	endolysin	lysis
UHGV-0141761_49	UniRef90	UniRef90_D6KLI5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0141761_49	eggNOG-mapper	1128111.HMPREF0870_01749	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0141761_49	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0141761_49	Structural annotation	MF_04111	NA	NA
UHGV-0141761_51	KOfam	K01759	GLO1, gloA; lactoylglutathione lyase [EC:4.4.1.5]	NA
UHGV-0141761_51	PHROG	phrog_14937	NA	unknown function
UHGV-0141761_51	UniRef90	UniRef90_A0A133S4G5	Glyoxalase family protein	NA
UHGV-0141761_51	eggNOG-mapper	546273.VEIDISOL_00587	Glyoxalase family	NA
UHGV-0141761_51	Pfam	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	Glyoxalase
UHGV-0141761_51	COG	COG0346	Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family	NA
UHGV-0141761_51	Structural annotation	PF00903, MF_01512, NF008551, COG0346	NA	NA