UHGV-0141826

Genome information

vOTU vOTU-061962

Genome length 34,047 bps

CDS count 49

Completeness 92.22% (high-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0141826
vOTU ID	vOTU-061962
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_414075
BioSample	SAMN05414939
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.22% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.29
Jumbo phage	No

Genome content
Genome length	34,047 bps
GC content	57.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	94.65%
Average CDS length	661.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0141826_1	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0141826_1	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0141826_1	UniRef90	UniRef90_A0A1M5YHQ5	Phage terminase large subunit	NA
UHGV-0141826_1	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0141826_1	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0141826_1	COG	COG1783	Phage terminase large subunit	NA
UHGV-0141826_1	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0141826_3	PHROG	phrog_156	portal protein	head and packaging
UHGV-0141826_3	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0141826_3	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0141826_5	PHROG	phrog_422	major head protein	head and packaging
UHGV-0141826_5	UniRef90	UniRef90_K1S1E0	Gp7 (Fragment)	NA
UHGV-0141826_5	eggNOG-mapper	693746.OBV_01700	NA	NA
UHGV-0141826_5	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0141826_5	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0141826_6	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0141826_6	Structural annotation	PF11650	NA	NA
UHGV-0141826_7	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0141826_7	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0141826_7	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0141826_8	PHROG	phrog_32822	virion structural protein	head and packaging
UHGV-0141826_8	Structural annotation	PF04582	NA	NA
UHGV-0141826_9	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0141826_10	KOfam	K06236	COL1A; collagen type I alpha	NA
UHGV-0141826_10	PHROG	phrog_11541	NA	unknown function
UHGV-0141826_10	eggNOG-mapper	763034.HMPREF9446_00480	NA	NA
UHGV-0141826_10	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0141826_10	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0141826_11	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0141826_11	PHROG	phrog_1794	amidase	lysis
UHGV-0141826_11	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0141826_11	eggNOG-mapper	1235793.C809_04312	Ami_2	NA
UHGV-0141826_11	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0141826_11	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0141826_11	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0141826_11	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0141826_12	PHROG	phrog_962	holin	lysis
UHGV-0141826_12	UniRef90	UniRef90_C0BX79	Holin, phage phi LC3 family	NA
UHGV-0141826_12	eggNOG-mapper	553973.CLOHYLEM_04415	Bacteriophage holin	NA
UHGV-0141826_12	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0141826_12	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0141826_12	COG	COG5546	NA	NA
UHGV-0141826_12	Structural annotation	COG5546	NA	NA
UHGV-0141826_14	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0141826_15	eggNOG-mapper	1519439.JPJG01000011_gene53	NA	NA
UHGV-0141826_16	PHROG	phrog_474	phosphofructokinase	other
UHGV-0141826_16	UniRef90	UniRef90_K1TIM3	NA	NA
UHGV-0141826_16	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-0141826_16	Pfam	PF19905	NA	DUF6378
UHGV-0141826_16	Structural annotation	PF19905	NA	NA
UHGV-0141826_18	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0141826_18	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0141826_18	eggNOG-mapper	445972.ANACOL_03331	NA	NA
UHGV-0141826_18	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0141826_18	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0141826_18	Structural annotation	PF04542, MF_00961, TIGR02835, COG1191	NA	NA
UHGV-0141826_21	PHROG	phrog_22543	NA	unknown function
UHGV-0141826_21	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0141826_22	UniRef90	UniRef90_Q5YA82	28	NA
UHGV-0141826_22	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0141826_23	PHROG	phrog_3392	NA	unknown function
UHGV-0141826_23	UniRef90	UniRef90_Q6J807	Pas24	NA
UHGV-0141826_23	eggNOG-mapper	1217710.F969_00044	NA	NA
UHGV-0141826_24	PHROG	phrog_3136	NA	unknown function
UHGV-0141826_24	UniRef90	UniRef90_UPI001A9A8D4F	ASCH domain-containing protein	NA
UHGV-0141826_24	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0141826_24	Pfam	PF04266	ASCH domain	ASCH
UHGV-0141826_24	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0141826_24	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0141826_25	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0141826_25	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0141826_28	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0141826_28	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0141826_28	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0141826_29	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0141826_29	UniRef90	UniRef90_UPI001A8FB48D	replisome organizer	NA
UHGV-0141826_29	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-0141826_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0141826_29	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0141826_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0141826_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0141826_30	UniRef90	UniRef90_A0A4Z0CEI8	Single-stranded DNA-binding protein	NA
UHGV-0141826_30	eggNOG-mapper	1074488.AGBX01000001_gene892	Single-strand binding protein family	NA
UHGV-0141826_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0141826_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0141826_30	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0141826_31	PHROG	phrog_14970	NA	unknown function
UHGV-0141826_31	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-0141826_31	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0141826_31	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0141826_31	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0141826_31	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0141826_35	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0141826_35	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0141826_35	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0141826_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0141826_35	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0141826_37	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0141826_42	Pfam	PF02150	RNA polymerases M/15 Kd subunit	RNA_POL_M_15KD
UHGV-0141826_44	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0141826_44	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0141826_44	UniRef90	UniRef90_UPI0013DE7A28	helix-turn-helix domain-containing protein	NA
UHGV-0141826_44	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-0141826_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141826_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0141826_44	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0141826_45	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0141826_45	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0141826_45	UniRef90	UniRef90_R5AVU4	CI-like repressor	NA
UHGV-0141826_45	eggNOG-mapper	1292020.H483_0116665	PFAM helix-turn-helix domain protein	NA
UHGV-0141826_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141826_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0141826_45	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0141826_48	KOfam	K14059	int; integrase	NA
UHGV-0141826_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0141826_48	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-0141826_48	eggNOG-mapper	1384066.JAGT01000001_gene153	Phage integrase family	NA
UHGV-0141826_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0141826_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0141826_48	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0141826_49	Pfam	PF14106	NA	DUF4279