UHGV-0141918

Genome information

Genome length 37,326 bps

CDS count 74

Completeness 79.00% (medium-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0141918
vOTU ID	vOTU-040082
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_398642
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.47
Jumbo phage	No

Genome content
Genome length	37,326 bps
GC content	51.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	87.02%
Average CDS length	444.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0141918_1	eggNOG-mapper	1235797.C816_04174	NA	NA
UHGV-0141918_2	PHROG	phrog_13256	NA	unknown function
UHGV-0141918_2	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0141918_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0141918_3	PHROG	phrog_15001	endolysin	lysis
UHGV-0141918_3	UniRef90	UniRef90_UPI001F2CBA52	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0141918_3	eggNOG-mapper	1378168.N510_01539	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0141918_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0141918_3	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0141918_3	Structural annotation	PF01510, MF_04111, COG5632	NA	NA
UHGV-0141918_5	PHROG	phrog_937	hemolysin	other
UHGV-0141918_5	eggNOG-mapper	1226322.HMPREF1545_00067	NA	NA
UHGV-0141918_6	UniRef90	UniRef90_U2R3E6	KORA domain-containing protein	NA
UHGV-0141918_6	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0141918_7	eggNOG-mapper	1235798.C817_03620	NA	NA
UHGV-0141918_8	PHROG	phrog_1281	NA	unknown function
UHGV-0141918_8	UniRef90	UniRef90_A0A0W7TLZ5	NA	NA
UHGV-0141918_8	eggNOG-mapper	1235798.C817_03619	NA	NA
UHGV-0141918_8	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0141918_8	COG	COG3600	NA	NA
UHGV-0141918_8	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0141918_10	PHROG	phrog_3754	NA	unknown function
UHGV-0141918_10	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0141918_11	PHROG	phrog_21718	NA	unknown function
UHGV-0141918_11	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0141918_12	PHROG	phrog_22984	NA	unknown function
UHGV-0141918_13	PHROG	phrog_16490	NA	unknown function
UHGV-0141918_13	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0141918_14	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0141918_15	PHROG	phrog_28802	NA	unknown function
UHGV-0141918_15	Structural annotation	PF12510	NA	NA
UHGV-0141918_16	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0141918_17	KOfam	K14059	int; integrase	NA
UHGV-0141918_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0141918_17	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0141918_17	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0141918_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0141918_17	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0141918_17	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0141918_18	PHROG	phrog_33519	NA	unknown function
UHGV-0141918_18	eggNOG-mapper	500633.CLOHIR_00738	NA	NA
UHGV-0141918_18	Structural annotation	PF13958, NF010262, COG2337	NA	NA
UHGV-0141918_21	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-0141918_21	UniRef90	UniRef90_UPI001EDE047F	phage minor capsid protein	NA
UHGV-0141918_21	eggNOG-mapper	411902.CLOBOL_02557	NA	NA
UHGV-0141918_22	PHROG	phrog_87	metallo-protease	other
UHGV-0141918_22	UniRef90	UniRef90_UPI001899699D	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0141918_22	eggNOG-mapper	1007096.BAGW01000011_gene2354	IrrE N-terminal-like domain	NA
UHGV-0141918_22	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0141918_22	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0141918_23	UniRef90	UniRef90_A0A173Y4I5	HTH cro/C1-type domain-containing protein	NA
UHGV-0141918_23	eggNOG-mapper	742738.HMPREF9460_02485	Helix-turn-helix XRE-family like proteins	NA
UHGV-0141918_23	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0141918_23	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0141918_23	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0141918_24	UniRef90	UniRef90_UPI001D011E8C	XRE family transcriptional regulator	NA
UHGV-0141918_24	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0141918_24	Structural annotation	TIGR03070	NA	NA
UHGV-0141918_27	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0141918_28	Structural annotation	PF15188, NF010673	NA	NA
UHGV-0141918_34	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0141918_34	UniRef90	UniRef90_A0A1C5N4H2	Siphovirus Gp157	NA
UHGV-0141918_34	eggNOG-mapper	1410670.JHXF01000015_gene2268	Siphovirus Gp157	NA
UHGV-0141918_34	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0141918_34	Structural annotation	PF05565	NA	NA
UHGV-0141918_35	PHROG	phrog_14970	NA	unknown function
UHGV-0141918_35	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-0141918_35	eggNOG-mapper	1410632.JHWW01000001_gene1266	double-strand break repair protein	NA
UHGV-0141918_35	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0141918_35	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0141918_35	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0141918_36	PHROG	phrog_1389	NA	unknown function
UHGV-0141918_36	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0141918_36	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0141918_37	PHROG	phrog_7566	NA	unknown function
UHGV-0141918_37	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0141918_37	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0141918_38	PHROG	phrog_4973	NA	unknown function
UHGV-0141918_38	UniRef90	UniRef90_UPI001D0904CC	helix-turn-helix domain-containing protein	NA
UHGV-0141918_38	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0141918_38	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0141918_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0141918_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0141918_39	UniRef90	UniRef90_A0A1Y4M5T6	Single-stranded DNA-binding protein	NA
UHGV-0141918_39	eggNOG-mapper	411467.BACCAP_02389	Single-strand binding protein family	NA
UHGV-0141918_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0141918_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0141918_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0141918_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0141918_39	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0141918_40	PHROG	phrog_16304	NA	unknown function
UHGV-0141918_40	UniRef90	UniRef90_A0A417HNC3	NA	NA
UHGV-0141918_40	eggNOG-mapper	498761.HM1_0053	HNH endonuclease	NA
UHGV-0141918_40	Pfam	PF19808	NA	DUF6291
UHGV-0141918_40	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0141918_40	Structural annotation	PF19808	NA	NA
UHGV-0141918_41	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0141918_41	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0141918_41	UniRef90	UniRef90_A0A1C5N602	DNA repair protein RadA	NA
UHGV-0141918_41	eggNOG-mapper	1378168.N510_01441	NA	NA
UHGV-0141918_41	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0141918_41	COG	COG0305	Replicative DNA helicase	NA
UHGV-0141918_41	Structural annotation	PF03796, MF_04154, NF006606, COG0467	NA	NA
UHGV-0141918_43	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0141918_43	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0141918_43	eggNOG-mapper	1123250.KB908417_gene653	NA	NA
UHGV-0141918_43	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0141918_45	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0141918_45	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0141918_45	UniRef90	UniRef90_UPI001D0084C1	site-specific DNA-methyltransferase	NA
UHGV-0141918_45	eggNOG-mapper	537007.BLAHAN_05507	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0141918_45	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0141918_45	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0141918_45	COG	COG0863	DNA modification methylase	NA
UHGV-0141918_45	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0141918_47	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-0141918_48	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0141918_48	UniRef90	UniRef90_A0A316S3E3	Reductase	NA
UHGV-0141918_48	eggNOG-mapper	1235835.C814_01169	NA	NA
UHGV-0141918_48	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0141918_48	Structural annotation	PF01507, NF006327	NA	NA
UHGV-0141918_49	Structural annotation	NF011227	NA	NA
UHGV-0141918_51	PHROG	phrog_38832	NA	unknown function
UHGV-0141918_51	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0141918_53	PHROG	phrog_1934	NA	unknown function
UHGV-0141918_53	UniRef90	UniRef90_UPI0018AC0226	zinc-finger-containing protein	NA
UHGV-0141918_53	eggNOG-mapper	397290.C810_01488	zinc-finger-containing domain	NA
UHGV-0141918_53	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-0141918_53	Structural annotation	PF11672	NA	NA
UHGV-0141918_55	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0141918_55	UniRef90	UniRef90_A0A1C6IRL8	NA	NA
UHGV-0141918_55	eggNOG-mapper	1244856.K4PY83_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0141918_55	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0141918_55	Structural annotation	PF18909	NA	NA
UHGV-0141918_56	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0141918_56	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0141918_56	Pfam	PF00847	AP2 domain	AP2
UHGV-0141918_57	PHROG	phrog_8684	NA	unknown function
UHGV-0141918_57	UniRef90	UniRef90_UPI001D00D0A2	YopX family protein	NA
UHGV-0141918_57	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-0141918_57	Pfam	PF09643	YopX protein	YopX
UHGV-0141918_57	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0141918_57	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0141918_60	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0141918_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0141918_60	UniRef90	UniRef90_U2SK55	DNA-binding helix-turn-helix protein	NA
UHGV-0141918_60	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0141918_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141918_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0141918_60	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0141918_62	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0141918_62	UniRef90	UniRef90_A0A096DGF2	HTH cro/C1-type domain-containing protein	NA
UHGV-0141918_62	eggNOG-mapper	742738.HMPREF9460_00887	Helix-turn-helix XRE-family like proteins	NA
UHGV-0141918_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141918_62	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0141918_64	UniRef90	UniRef90_A0A1V5BUF9	Helix-turn-helix domain protein	NA
UHGV-0141918_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141918_64	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0141918_65	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0141918_65	UniRef90	UniRef90_A0A1C7FRC2	Transposase	NA
UHGV-0141918_65	eggNOG-mapper	1408437.JNJN01000045_gene597	HNH endonuclease	NA
UHGV-0141918_65	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0141918_65	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0141918_65	Structural annotation	PF07141	NA	NA
UHGV-0141918_66	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0141918_66	PHROG	phrog_10250	NA	unknown function
UHGV-0141918_66	UniRef90	UniRef90_UPI001C104F24	PBSX family phage terminase large subunit	NA
UHGV-0141918_66	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0141918_66	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0141918_66	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0141918_66	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0141918_66	COG	COG1783	Phage terminase large subunit	NA
UHGV-0141918_66	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0141918_67	PHROG	phrog_533	portal protein	head and packaging
UHGV-0141918_67	UniRef90	UniRef90_UPI00189D71DB	phage capsid protein	NA
UHGV-0141918_67	eggNOG-mapper	1232443.BAIA02000078_gene36	NA	NA
UHGV-0141918_67	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0141918_68	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0141918_68	UniRef90	UniRef90_A0A2U1BEM4	Minor capsid protein 2	NA
UHGV-0141918_68	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0141918_68	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0141918_68	COG	COG2369	NA	NA
UHGV-0141918_68	Structural annotation	PF06152	NA	NA
UHGV-0141918_70	Structural annotation	PF19593	NA	NA
UHGV-0141918_71	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0141918_71	UniRef90	UniRef90_UPI00189CE417	phage scaffolding protein	NA
UHGV-0141918_71	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0141918_71	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0141918_71	Structural annotation	PF06810	NA	NA
UHGV-0141918_72	PHROG	phrog_909	major head protein	head and packaging
UHGV-0141918_72	UniRef90	UniRef90_A0A0R1VNK8	NA	NA
UHGV-0141918_72	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-0141918_72	Structural annotation	PF02924	NA	NA
UHGV-0141918_73	PHROG	phrog_29	major head protein	head and packaging
UHGV-0141918_73	UniRef90	UniRef90_UPI0004AE1FFD	major capsid protein	NA
UHGV-0141918_73	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0141918_73	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0141918_73	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0141918_74	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0141918_74	eggNOG-mapper	665956.HMPREF1032_03064	NA	NA