UHGV-0141958

Genome information

Genome length 27,993 bps

CDS count 45

Completeness 65.60% (medium-quality)

geNomad score 0.9831

Prediction confidence Confident

Genome information
Genome ID	UHGV-0141958
vOTU ID	vOTU-038352
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_406833
BioSample	NA
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9831
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.22
Jumbo phage	No

Genome content
Genome length	27,993 bps
GC content	58.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	94.79%
Average CDS length	594.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0141958_1	eggNOG-mapper	693746.OBV_23800	NA	NA
UHGV-0141958_2	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0141958_3	UniRef90	UniRef90_A0A8D9UGT1	Sigma C capsid protein	NA
UHGV-0141958_4	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0141958_4	UniRef90	UniRef90_A0A8D9UH72	Stabilization protein (Fragment)	NA
UHGV-0141958_4	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-0141958_4	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0141958_5	PHROG	phrog_12105	NA	unknown function
UHGV-0141958_5	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0141958_6	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0141958_6	PHROG	phrog_1493	endolysin	lysis
UHGV-0141958_6	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-0141958_6	eggNOG-mapper	411473.RUMCAL_02267	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0141958_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0141958_6	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0141958_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0141958_6	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, COG0860, COG3409	NA	NA
UHGV-0141958_7	PHROG	phrog_881	holin	lysis
UHGV-0141958_7	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-0141958_7	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0141958_7	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0141958_7	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0141958_8	PHROG	phrog_4105	NA	unknown function
UHGV-0141958_8	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0141958_8	eggNOG-mapper	742740.HMPREF9474_02252	NA	NA
UHGV-0141958_9	KOfam	K10062	COLEC12; collectin sub-family member 12	NA
UHGV-0141958_9	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0141958_9	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0141958_9	Structural annotation	PF04862, NF033675	NA	NA
UHGV-0141958_10	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0141958_10	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0141958_10	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0141958_10	Structural annotation	PF10651	NA	NA
UHGV-0141958_11	PHROG	phrog_15239	NA	unknown function
UHGV-0141958_11	eggNOG-mapper	1449126.JQKL01000003_gene1694	NA	NA
UHGV-0141958_12	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0141958_12	UniRef90	UniRef90_A0A8D9UH64	Major capsid protein	NA
UHGV-0141958_12	eggNOG-mapper	1449126.JQKL01000003_gene1695	NA	NA
UHGV-0141958_12	Pfam	PF13252	NA	DUF4043
UHGV-0141958_12	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0141958_12	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0141958_13	PHROG	phrog_13908	NA	unknown function
UHGV-0141958_13	UniRef90	UniRef90_A0A844DRV7	Ribosomal-processing cysteine protease Prp	NA
UHGV-0141958_13	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0141958_14	UniRef90	UniRef90_A0A8D9PDR6	YsxB-like protein	NA
UHGV-0141958_14	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0141958_14	Structural annotation	NF011128, COG2868	NA	NA
UHGV-0141958_15	PHROG	phrog_156	portal protein	head and packaging
UHGV-0141958_15	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-0141958_15	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0141958_15	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0141958_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0141958_16	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0141958_16	UniRef90	UniRef90_A0A8D9PDR5	Large subunit terminase	NA
UHGV-0141958_16	eggNOG-mapper	657322.FPR_02290	Terminase-like family	NA
UHGV-0141958_16	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0141958_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0141958_16	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0141958_17	UniRef90	UniRef90_A0A8D9PDT2	Brinker DNA-binding domain protein	NA
UHGV-0141958_17	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0141958_17	Structural annotation	PF04218, COG3677	NA	NA
UHGV-0141958_20	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0141958_22	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0141958_23	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0141958_23	UniRef90	UniRef90_A0A315Y4I9	Lar family restriction alleviation protein	NA
UHGV-0141958_23	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0141958_23	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0141958_23	Structural annotation	TIGR03655	NA	NA
UHGV-0141958_24	PHROG	phrog_38832	NA	unknown function
UHGV-0141958_24	Pfam	PF04448	NA	DUF551
UHGV-0141958_28	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-0141958_28	UniRef90	UniRef90_A0A6L5TDR3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0141958_28	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0141958_28	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0141958_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0141958_31	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0141958_31	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0141958_31	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0141958_31	Pfam	PF06356	NA	DUF1064
UHGV-0141958_31	Structural annotation	PF06356	NA	NA
UHGV-0141958_33	Structural annotation	PF11417	NA	NA
UHGV-0141958_34	PHROG	phrog_15768	NA	unknown function
UHGV-0141958_34	UniRef90	UniRef90_UPI0019563B2C	NA	NA
UHGV-0141958_34	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0141958_34	Pfam	PF19808	NA	DUF6291
UHGV-0141958_34	Structural annotation	PF19808	NA	NA
UHGV-0141958_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0141958_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0141958_37	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0141958_37	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0141958_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0141958_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0141958_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0141958_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0141958_37	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0141958_38	Structural annotation	PF12844, MF_00535, NF041951, COG5499	NA	NA
UHGV-0141958_39	PHROG	phrog_7566	NA	unknown function
UHGV-0141958_39	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0141958_39	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0141958_40	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0141958_40	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0141958_40	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0141958_40	Structural annotation	PF05772	NA	NA
UHGV-0141958_41	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0141958_41	UniRef90	UniRef90_UPI00130EB09C	ERF family protein	NA
UHGV-0141958_41	eggNOG-mapper	97138.C820_00777	ERF superfamily	NA
UHGV-0141958_41	Pfam	PF04404	ERF superfamily	ERF
UHGV-0141958_41	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0141958_42	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0141958_42	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0141958_42	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0141958_42	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0141958_42	Structural annotation	PF05565	NA	NA
UHGV-0141958_44	UniRef90	UniRef90_A0A8D9UH91	HTH cro/C1-type domain-containing protein	NA
UHGV-0141958_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141958_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0141958_44	Structural annotation	PF01381, PF21715, NF041951, TIGR04176, COG1476, COG1654	NA	NA
UHGV-0141958_45	PHROG	phrog_27197	NA	unknown function
UHGV-0141958_45	eggNOG-mapper	767434.Fraau_1460	regulation of DNA-templated transcription, elongation	NA
UHGV-0141958_45	COG	COG5164	Transcription elongation factor SPT5	NA