UHGV-0141966

Genome information

Genome length 36,171 bps

CDS count 64

Completeness 99.40% (high-quality)

geNomad score 0.9685

Prediction confidence Confident

Genome information
Genome ID	UHGV-0141966
vOTU ID	vOTU-010562
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_432364
BioSample	SAMN05545044
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.40% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9685
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.05
Jumbo phage	No

Genome content
Genome length	36,171 bps
GC content	43.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	90.71%
Average CDS length	514.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0141966_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0141966_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0141966_1	UniRef90	UniRef90_A0A3E2V3H9	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0141966_1	eggNOG-mapper	1235800.C819_00524	Resolvase, N terminal domain	NA
UHGV-0141966_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0141966_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0141966_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0141966_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0141966_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0141966_2	UniRef90	UniRef90_UPI001C00A8DA	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0141966_2	eggNOG-mapper	1121334.KB911073_gene1841	NA	NA
UHGV-0141966_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0141966_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0141966_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0141966_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0141966_3	UniRef90	UniRef90_UPI000AC6D071	helix-turn-helix domain-containing protein	NA
UHGV-0141966_3	eggNOG-mapper	999413.HMPREF1094_00245	Peptidase S24-like	NA
UHGV-0141966_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0141966_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0141966_3	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0141966_3	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, NF041951, COG2932	NA	NA
UHGV-0141966_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0141966_5	UniRef90	UniRef90_UPI0018984AD4	helix-turn-helix transcriptional regulator	NA
UHGV-0141966_5	eggNOG-mapper	411902.CLOBOL_05710	Helix-turn-helix XRE-family like proteins	NA
UHGV-0141966_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0141966_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0141966_5	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0141966_6	AcrCatalog	cluster_147956	NA	NA
UHGV-0141966_8	PHROG	phrog_6996	NA	unknown function
UHGV-0141966_11	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0141966_11	eggNOG-mapper	411902.CLOBOL_05702	NA	NA
UHGV-0141966_11	Structural annotation	PF21578	NA	NA
UHGV-0141966_12	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0141966_12	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0141966_12	UniRef90	UniRef90_A8S0K6	RNase H type-1 domain-containing protein	NA
UHGV-0141966_12	eggNOG-mapper	411902.CLOBOL_05701	RNase H	NA
UHGV-0141966_12	Pfam	PF00075	RNase H	RNase_H
UHGV-0141966_12	COG	COG0328	Ribonuclease HI	NA
UHGV-0141966_12	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0141966_15	PHROG	phrog_7566	NA	unknown function
UHGV-0141966_15	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-0141966_18	KOfam	K02405	fliA, whiG; RNA polymerase sigma factor FliA	NA
UHGV-0141966_18	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0141966_18	UniRef90	UniRef90_A0A2T3FFB5	Sigma70_r4 domain-containing protein	NA
UHGV-0141966_18	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0141966_18	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-0141966_18	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA
UHGV-0141966_20	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0141966_20	UniRef90	UniRef90_Q4Z926	ORF101	NA
UHGV-0141966_20	eggNOG-mapper	931626.Awo_c18050	NA	NA
UHGV-0141966_25	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0141966_25	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0141966_25	UniRef90	UniRef90_A0A414AP29	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0141966_25	eggNOG-mapper	742740.HMPREF9474_04679	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0141966_25	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0141966_25	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0141966_25	COG	COG0338	DNA-adenine methylase	NA
UHGV-0141966_25	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0141966_31	PHROG	phrog_6568	NA	unknown function
UHGV-0141966_31	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0141966_32	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0141966_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0141966_32	UniRef90	UniRef90_UPI001D092785	tyrosine-type recombinase/integrase	NA
UHGV-0141966_32	eggNOG-mapper	679935.Alfi_1809	Belongs to the 'phage' integrase family	NA
UHGV-0141966_32	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0141966_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0141966_32	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0141966_32	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0141966_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0141966_33	UniRef90	UniRef90_A0A174EB71	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-0141966_33	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-0141966_33	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0141966_35	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0141966_35	UniRef90	UniRef90_R6M5E4	Prophage LambdaBa04 GP54	NA
UHGV-0141966_35	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-0141966_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0141966_36	PHROG	phrog_1066	NA	unknown function
UHGV-0141966_36	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-0141966_36	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0141966_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0141966_37	UniRef90	UniRef90_A0A414AVD9	Terminase large subunit	NA
UHGV-0141966_37	eggNOG-mapper	1203606.HMPREF1526_01335	Terminase	NA
UHGV-0141966_37	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0141966_37	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0141966_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0141966_37	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0141966_38	PHROG	phrog_12	portal protein	head and packaging
UHGV-0141966_38	UniRef90	UniRef90_A0A414AVF4	Phage portal protein	NA
UHGV-0141966_38	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0141966_38	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0141966_38	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0141966_38	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0141966_39	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0141966_39	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0141966_39	UniRef90	UniRef90_UPI001D074626	Clp protease ClpP	NA
UHGV-0141966_39	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0141966_39	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0141966_39	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0141966_39	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0141966_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-0141966_40	UniRef90	UniRef90_UPI001D116ACE	phage major capsid protein	NA
UHGV-0141966_40	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0141966_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0141966_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0141966_40	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0141966_40	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0141966_41	UniRef90	UniRef90_B6W9Y5	Putative phage DNA packaging protein	NA
UHGV-0141966_41	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-0141966_41	Structural annotation	TIGR01560	NA	NA
UHGV-0141966_42	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0141966_42	UniRef90	UniRef90_A0A2C5GPS3	Phage head-tail adapter protein	NA
UHGV-0141966_42	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0141966_42	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0141966_43	UniRef90	UniRef90_A0A1M4Z6E0	Phage protein, HK97 gp10 family	NA
UHGV-0141966_43	Structural annotation	TIGR01725	NA	NA
UHGV-0141966_44	Structural annotation	PF06141	NA	NA
UHGV-0141966_45	PHROG	phrog_88	major tail protein	tail
UHGV-0141966_45	UniRef90	UniRef90_UPI001D1188C4	phage tail protein	NA
UHGV-0141966_45	eggNOG-mapper	742740.HMPREF9474_04299	NA	NA
UHGV-0141966_45	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0141966_45	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0141966_48	PHROG	phrog_2276	tail length tape measure protein	tail
UHGV-0141966_48	UniRef90	UniRef90_UPI001D1265F0	phage tail tape measure protein	NA
UHGV-0141966_48	eggNOG-mapper	742740.HMPREF9474_04296	Phage tail tape measure protein TP901	NA
UHGV-0141966_48	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0141966_48	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0141966_49	UniRef90	UniRef90_UPI00189CF998	DNRLRE domain-containing protein	NA
UHGV-0141966_49	eggNOG-mapper	997296.PB1_16159	self proteolysis	NA
UHGV-0141966_49	COG	COG3209	NA	NA
UHGV-0141966_49	Structural annotation	PF06995, PF02010, MF_04116, TIGR02126, NF041431, COG3499, COG2372	NA	NA
UHGV-0141966_50	PHROG	phrog_26795	NA	unknown function
UHGV-0141966_50	eggNOG-mapper	742740.HMPREF9474_04294	NA	NA
UHGV-0141966_50	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0141966_51	PHROG	phrog_12764	NA	unknown function
UHGV-0141966_51	Structural annotation	PF01176, MF_00085, TIGR00523, COG0361	NA	NA
UHGV-0141966_52	PHROG	phrog_15437	tail fiber protein	tail
UHGV-0141966_52	eggNOG-mapper	1151292.QEW_0665	NA	NA
UHGV-0141966_52	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0141966_54	eggNOG-mapper	742733.HMPREF9469_01800	NA	NA
UHGV-0141966_55	UniRef90	UniRef90_A0A3E2U4U3	XkdX family protein	NA
UHGV-0141966_55	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0141966_55	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0141966_56	PHROG	phrog_4105	NA	unknown function
UHGV-0141966_56	eggNOG-mapper	610130.Closa_0762	NA	NA
UHGV-0141966_57	PHROG	phrog_443	holin	lysis
UHGV-0141966_57	UniRef90	UniRef90_UPI001EE0823A	holin	NA
UHGV-0141966_57	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-0141966_57	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0141966_57	Structural annotation	PF16945	NA	NA
UHGV-0141966_58	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0141966_58	PHROG	phrog_9611	endolysin	lysis
UHGV-0141966_58	UniRef90	UniRef90_R5FAN7	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0141966_58	eggNOG-mapper	742733.HMPREF9469_01796	Ami_2	NA
UHGV-0141966_58	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0141966_58	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0141966_58	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0141966_58	Structural annotation	PF01510, PF19127, MF_04111, NF008758, TIGR04035, COG5632	NA	NA
UHGV-0141966_59	UniRef90	UniRef90_A0A1Y4EXX7	ATP-binding protein	NA
UHGV-0141966_59	eggNOG-mapper	293826.Amet_1611	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex	NA
UHGV-0141966_59	COG	COG0323	DNA mismatch repair ATPase MutL	NA
UHGV-0141966_59	Structural annotation	MF_00505, NF003555, COG0323	NA	NA
UHGV-0141966_61	PHROG	phrog_2329	NA	unknown function
UHGV-0141966_61	UniRef90	UniRef90_A0A6M5GDY0	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0141966_61	eggNOG-mapper	1292035.H476_0264	NA	NA
UHGV-0141966_61	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0141966_61	Structural annotation	PF04014, NF007312, COG2336	NA	NA