UHGV-0142061

Genome information

Genome length 22,907 bps

CDS count 43

Completeness 53.82% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142061
vOTU ID	vOTU-030266
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_403312
BioSample	SAMN05414979
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.82% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	7.57
Jumbo phage	No

Genome content
Genome length	22,907 bps
GC content	52.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	93.86%
Average CDS length	503.37 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142061_1	KOfam	K04759	feoB; ferrous iron transport protein B	NA
UHGV-0142061_1	UniRef90	UniRef90_A0A3C0B893	Ferrous iron transport protein B (Fragment)	NA
UHGV-0142061_1	eggNOG-mapper	435591.BDI_1461	transporter of a GTP-driven Fe(2 ) uptake system	NA
UHGV-0142061_1	Pfam	PF02421	Ferrous iron transport protein B	FeoB_N
UHGV-0142061_1	NCBIFam	TIGR00231.1	GTP-binding protein	NA
UHGV-0142061_1	COG	COG0370	Fe2+ transporter FeoB	NA
UHGV-0142061_2	KOfam	K14059	int; integrase	NA
UHGV-0142061_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0142061_2	UniRef90	UniRef90_UPI001EDE32BF	site-specific integrase	NA
UHGV-0142061_2	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0142061_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0142061_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0142061_2	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0142061_3	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0142061_4	PHROG	phrog_28802	NA	unknown function
UHGV-0142061_4	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0142061_5	PHROG	phrog_20016	NA	unknown function
UHGV-0142061_5	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0142061_5	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0142061_5	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0142061_7	PHROG	phrog_16490	NA	unknown function
UHGV-0142061_7	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0142061_8	PHROG	phrog_22984	NA	unknown function
UHGV-0142061_9	PHROG	phrog_21718	NA	unknown function
UHGV-0142061_9	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0142061_10	PHROG	phrog_3754	NA	unknown function
UHGV-0142061_10	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0142061_14	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0142061_14	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0142061_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0142061_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0142061_14	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0142061_15	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0142061_15	UniRef90	UniRef90_A0A351TR50	Transcriptional regulator	NA
UHGV-0142061_15	eggNOG-mapper	927704.SELR_12480	NA	NA
UHGV-0142061_15	Structural annotation	PF17375	NA	NA
UHGV-0142061_16	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0142061_16	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0142061_17	PHROG	phrog_21357	endolysin	lysis
UHGV-0142061_17	UniRef90	UniRef90_R5SN87	Peptidase C51 domain-containing protein	NA
UHGV-0142061_17	eggNOG-mapper	1007096.BAGW01000022_gene2648	CHAP domain	NA
UHGV-0142061_17	Pfam	PF05257	CHAP domain	CHAP
UHGV-0142061_17	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0142061_17	Structural annotation	TIGR02594	NA	NA
UHGV-0142061_18	PHROG	phrog_13256	NA	unknown function
UHGV-0142061_18	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0142061_20	PHROG	phrog_937	hemolysin	other
UHGV-0142061_20	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0142061_25	Pfam	PF18902	NA	DUF5658
UHGV-0142061_25	Structural annotation	PF18902	NA	NA
UHGV-0142061_26	Structural annotation	PF04017, MF_01602, NF010922, COG0095	NA	NA
UHGV-0142061_28	UniRef90	UniRef90_A0A810QCC8	Peptidase S74 domain-containing protein	NA
UHGV-0142061_28	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0142061_28	Structural annotation	TIGR01643	NA	NA
UHGV-0142061_29	PHROG	phrog_32308	NA	unknown function
UHGV-0142061_29	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0142061_29	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0142061_29	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0142061_30	PHROG	phrog_1194	NA	unknown function
UHGV-0142061_30	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-0142061_30	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0142061_31	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0142061_31	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0142061_31	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0142061_31	COG	COG1511	NA	NA
UHGV-0142061_31	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0142061_32	PHROG	phrog_806	NA	unknown function
UHGV-0142061_32	UniRef90	UniRef90_UPI00137B5163	NA	NA
UHGV-0142061_32	eggNOG-mapper	397290.C810_05150	NA	NA
UHGV-0142061_32	Pfam	PF11611	NA	DUF4352
UHGV-0142061_32	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0142061_33	PHROG	phrog_706	NA	unknown function
UHGV-0142061_33	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0142061_33	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0142061_33	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0142061_33	Structural annotation	PF06854	NA	NA
UHGV-0142061_34	PHROG	phrog_11299	NA	unknown function
UHGV-0142061_34	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0142061_34	Structural annotation	PF10666	NA	NA
UHGV-0142061_35	PHROG	phrog_3099	NA	unknown function
UHGV-0142061_35	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0142061_35	Structural annotation	TIGR02126	NA	NA
UHGV-0142061_36	PHROG	phrog_3266	tail completion	connector
UHGV-0142061_36	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0142061_36	Structural annotation	PF12691	NA	NA
UHGV-0142061_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0142061_37	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0142061_37	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0142061_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0142061_37	Structural annotation	PF11114	NA	NA
UHGV-0142061_38	PHROG	phrog_3366	NA	unknown function
UHGV-0142061_38	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0142061_38	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0142061_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0142061_39	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0142061_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-0142061_40	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0142061_40	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0142061_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0142061_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0142061_40	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0142061_40	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0142061_41	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0142061_41	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0142061_41	Structural annotation	PF06810	NA	NA
UHGV-0142061_42	Structural annotation	PF03869, NF010256	NA	NA