UHGV-0142072

Genome information

Genome length 32,710 bps

CDS count 44

Completeness 89.39% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142072
vOTU ID	vOTU-036252
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_427013
BioSample	NA
Country	Estonia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.37
Jumbo phage	No

Genome content
Genome length	32,710 bps
GC content	37.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	89.81%
Average CDS length	669.68 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142072_1	PHROG	phrog_918	NA	unknown function
UHGV-0142072_1	UniRef90	UniRef90_UPI00164AB9AF	NA	NA
UHGV-0142072_1	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0142072_1	Pfam	PF19791	NA	DUF6275
UHGV-0142072_1	Structural annotation	PF19791	NA	NA
UHGV-0142072_2	PHROG	phrog_199	holin	lysis
UHGV-0142072_2	UniRef90	UniRef90_E2NU60	Toxin secretion/phage lysis holin	NA
UHGV-0142072_2	eggNOG-mapper	742723.HMPREF9477_00889	Bacteriophage holin family	NA
UHGV-0142072_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0142072_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0142072_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0142072_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0142072_3	PHROG	phrog_372	tail protein	tail
UHGV-0142072_3	UniRef90	UniRef90_UPI0006C32325	NA	NA
UHGV-0142072_3	eggNOG-mapper	1211844.CBLM010000016_gene1479	NA	NA
UHGV-0142072_3	Pfam	PF05895	NA	DUF859
UHGV-0142072_3	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0142072_4	PHROG	phrog_18110	NA	unknown function
UHGV-0142072_4	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0142072_4	COG	COG4926	Phage-related protein	NA
UHGV-0142072_5	PHROG	phrog_30133	virion structural protein	head and packaging
UHGV-0142072_5	UniRef90	UniRef90_I7ARM6	NA	NA
UHGV-0142072_5	eggNOG-mapper	1504823.CCMM01000008_gene1029	NA	NA
UHGV-0142072_5	Structural annotation	PF14874, NF038186	NA	NA
UHGV-0142072_6	PHROG	phrog_15074	NA	unknown function
UHGV-0142072_6	eggNOG-mapper	445974.CLORAM_02919	cellulase activity	NA
UHGV-0142072_6	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0142072_6	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0142072_7	PHROG	phrog_1194	NA	unknown function
UHGV-0142072_7	eggNOG-mapper	1504823.CCMM01000008_gene1031	NA	NA
UHGV-0142072_7	Pfam	PF20458	NA	DUF6711
UHGV-0142072_7	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0142072_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0142072_8	UniRef90	UniRef90_UPI0006DC6310	tape measure protein	NA
UHGV-0142072_8	eggNOG-mapper	650150.ERH_0621	tape measure	NA
UHGV-0142072_8	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0142072_8	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0142072_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0142072_8	Structural annotation	PF20155, TIGR01760, COG5281	NA	NA
UHGV-0142072_9	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0142072_9	UniRef90	UniRef90_UPI0011C9B36A	NA	NA
UHGV-0142072_9	eggNOG-mapper	445974.CLORAM_02923	NA	NA
UHGV-0142072_9	Pfam	PF19591	NA	DUF6096
UHGV-0142072_9	Structural annotation	PF19591	NA	NA
UHGV-0142072_10	PHROG	phrog_158	major tail protein	tail
UHGV-0142072_10	UniRef90	UniRef90_A0A6N9L2K6	Phage tail protein	NA
UHGV-0142072_10	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0142072_10	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0142072_10	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0142072_11	PHROG	phrog_78	tail terminator	connector
UHGV-0142072_11	eggNOG-mapper	1504823.CCMM01000008_gene1036	NA	NA
UHGV-0142072_11	Structural annotation	PF05657	NA	NA
UHGV-0142072_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0142072_12	UniRef90	UniRef90_A0A6N9L3B6	HK97 gp10 family phage protein	NA
UHGV-0142072_12	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0142072_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0142072_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0142072_12	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0142072_13	PHROG	phrog_2168	NA	unknown function
UHGV-0142072_13	eggNOG-mapper	1280689.AUJC01000003_gene969	NA	NA
UHGV-0142072_13	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0142072_14	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0142072_14	UniRef90	UniRef90_UPI001C101B39	phage head-tail connector protein	NA
UHGV-0142072_14	eggNOG-mapper	1235800.C819_00483	Phage gp6-like head-tail connector protein	NA
UHGV-0142072_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0142072_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0142072_15	PHROG	phrog_2724	NA	unknown function
UHGV-0142072_15	UniRef90	UniRef90_A0A6N9L4P9	Rho_N domain-containing protein	NA
UHGV-0142072_15	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0142072_15	COG	COG0261	Ribosomal protein L21	NA
UHGV-0142072_15	Structural annotation	PF07498	NA	NA
UHGV-0142072_16	PHROG	phrog_422	major head protein	head and packaging
UHGV-0142072_16	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0142072_16	eggNOG-mapper	1211844.CBLM010000016_gene1491	NA	NA
UHGV-0142072_16	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0142072_17	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0142072_17	UniRef90	UniRef90_A0A6N9L4V5	NA	NA
UHGV-0142072_17	eggNOG-mapper	1211844.CBLM010000016_gene1492	NA	NA
UHGV-0142072_17	Pfam	PF14265	NA	DUF4355
UHGV-0142072_17	Structural annotation	PF14265	NA	NA
UHGV-0142072_18	PHROG	phrog_3675	NA	unknown function
UHGV-0142072_18	UniRef90	UniRef90_A0A0E4H649	YjcQ protein	NA
UHGV-0142072_18	eggNOG-mapper	1120978.KB894082_gene1061	YjcQ protein	NA
UHGV-0142072_18	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0142072_18	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0142072_20	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0142072_20	UniRef90	UniRef90_A0A6N9L4X5	Phage_Mu_F domain-containing protein	NA
UHGV-0142072_20	eggNOG-mapper	1211844.CBLM010000016_gene1495	Phage Mu protein F like protein	NA
UHGV-0142072_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0142072_20	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0142072_20	COG	COG2369	NA	NA
UHGV-0142072_20	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0142072_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0142072_21	UniRef90	UniRef90_A0A6N9L3D6	Phage portal protein	NA
UHGV-0142072_21	eggNOG-mapper	445974.CLORAM_02935	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0142072_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0142072_21	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0142072_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0142072_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0142072_22	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0142072_22	UniRef90	UniRef90_E2NR92	Phage terminase, large subunit, PBSX family	NA
UHGV-0142072_22	eggNOG-mapper	445974.CLORAM_02936	Phage terminase, large subunit, PBSX family	NA
UHGV-0142072_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0142072_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0142072_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0142072_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0142072_22	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0142072_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0142072_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0142072_23	UniRef90	UniRef90_A0A6N9L4V4	Terminase small subunit	NA
UHGV-0142072_23	eggNOG-mapper	1504823.CCMM01000008_gene1049	DNA packaging	NA
UHGV-0142072_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0142072_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0142072_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0142072_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0142072_24	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0142072_24	Pfam	PF07374	NA	DUF1492
UHGV-0142072_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0142072_24	Structural annotation	PF08281, MF_00674, NF007227, COG1191	NA	NA
UHGV-0142072_26	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0142072_26	UniRef90	UniRef90_A0A6N9L4W3	NA	NA
UHGV-0142072_26	eggNOG-mapper	445974.CLORAM_02947	NA	NA
UHGV-0142072_26	Pfam	PF06356	NA	DUF1064
UHGV-0142072_26	Structural annotation	PF06356	NA	NA
UHGV-0142072_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0142072_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0142072_27	UniRef90	UniRef90_A0A6N9L4V1	Single-stranded DNA-binding protein	NA
UHGV-0142072_27	eggNOG-mapper	1121333.JMLH01000005_gene483	COG COG0629 Single-stranded DNA-binding protein	NA
UHGV-0142072_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0142072_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0142072_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0142072_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0142072_27	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0142072_29	PHROG	phrog_6072	NA	unknown function
UHGV-0142072_32	PHROG	phrog_22292	NA	unknown function
UHGV-0142072_32	eggNOG-mapper	1232446.BAIE02000041_gene2433	NA	NA
UHGV-0142072_33	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0142072_33	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0142072_33	UniRef90	UniRef90_UPI001D09885E	site-specific DNA-methyltransferase	NA
UHGV-0142072_33	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-0142072_33	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0142072_33	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0142072_33	COG	COG0863	DNA modification methylase	NA
UHGV-0142072_33	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0142072_35	PHROG	phrog_4856	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0142072_35	UniRef90	UniRef90_E2NR83	MazG domain-containing protein	NA
UHGV-0142072_35	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0142072_35	Structural annotation	MF_01019, NF002747, COG0140	NA	NA
UHGV-0142072_36	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0142072_36	Pfam	PF09339	IclR helix-turn-helix domain	HTH_IclR
UHGV-0142072_36	Structural annotation	PF09681, NF033788, COG0640	NA	NA
UHGV-0142072_37	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0142072_37	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0142072_37	UniRef90	UniRef90_UPI0014317E61	recombinase RecT	NA
UHGV-0142072_37	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0142072_37	Pfam	PF03837	RecT family	RecT
UHGV-0142072_37	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0142072_37	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0142072_37	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0142072_38	UniRef90	UniRef90_A0A412KEL9	XRE family transcriptional regulator	NA
UHGV-0142072_38	eggNOG-mapper	742738.HMPREF9460_00730	NA	NA
UHGV-0142072_38	Pfam	PF17827	PrmC N-terminal domain	PrmC_N
UHGV-0142072_39	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0142072_39	UniRef90	UniRef90_UPI0014313337	YqaJ viral recombinase family protein	NA
UHGV-0142072_39	eggNOG-mapper	857293.CAAU_0780	YqaJ-like viral recombinase domain	NA
UHGV-0142072_39	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0142072_39	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0142072_39	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0142072_39	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0142072_40	UniRef90	UniRef90_A0A416DT94	DNA-binding protein	NA
UHGV-0142072_40	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0142072_41	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0142072_41	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0142072_41	UniRef90	UniRef90_A0A3D1YTA2	Bro-N domain-containing protein (Fragment)	NA
UHGV-0142072_41	eggNOG-mapper	257314.LJ_1455	BRO family, N-terminal domain	NA
UHGV-0142072_41	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0142072_41	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0142072_41	COG	COG3617	Prophage antirepressor	NA
UHGV-0142072_41	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0142072_42	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0142072_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0142072_42	UniRef90	UniRef90_A0A1C6FKH6	HTH-type transcriptional regulator immR	NA
UHGV-0142072_42	eggNOG-mapper	411469.EUBHAL_01993	Helix-turn-helix XRE-family like proteins	NA
UHGV-0142072_42	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0142072_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0142072_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0142072_42	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0142072_43	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0142072_43	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0142072_43	UniRef90	UniRef90_A0A1C6FJX9	LexA repressor	NA
UHGV-0142072_43	eggNOG-mapper	476272.RUMHYD_03305	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0142072_43	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0142072_43	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0142072_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0142072_43	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974	NA	NA
UHGV-0142072_44	KOfam	K14059	int; integrase	NA
UHGV-0142072_44	PHROG	phrog_1	integrase	integration and excision
UHGV-0142072_44	UniRef90	UniRef90_A0A6N9L4Z3	Tyrosine-type recombinase/integrase	NA
UHGV-0142072_44	eggNOG-mapper	1122173.AXVL01000018_gene468	Pfam:Integrase_AP2	NA
UHGV-0142072_44	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0142072_44	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0142072_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0142072_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0142072_44	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA