UHGV-0142107

Genome information

Genome length 38,451 bps

CDS count 54

Completeness 93.36% (high-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142107
vOTU ID	vOTU-069659
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_438004
BioSample	SAMN06016401
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.36% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.73
Jumbo phage	No

Genome content
Genome length	38,451 bps
GC content	39.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.99%
Average CDS length	656.72 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142107_1	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0142107_1	PHROG	phrog_7	endolysin	lysis
UHGV-0142107_1	UniRef90	UniRef90_A0A3R6HYB3	Lysozyme	NA
UHGV-0142107_1	eggNOG-mapper	693746.OBV_20240	Phage lysozyme	NA
UHGV-0142107_1	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0142107_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0142107_1	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0142107_1	HAMAP	MF_04110	Endolysin	NA
UHGV-0142107_1	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA
UHGV-0142107_2	PHROG	phrog_443	holin	lysis
UHGV-0142107_2	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0142107_2	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0142107_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0142107_2	Structural annotation	PF16945	NA	NA
UHGV-0142107_3	PHROG	phrog_1863	NA	unknown function
UHGV-0142107_3	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0142107_5	PHROG	phrog_1220	head protein	head and packaging
UHGV-0142107_5	UniRef90	UniRef90_K8EHZ6	Phage structural domain protein	NA
UHGV-0142107_5	eggNOG-mapper	1211817.CCAT010000079_gene1381	COG NOG18825 non supervised orthologous group	NA
UHGV-0142107_5	Structural annotation	PF20747, PF07210, TIGR04134, COG2512	NA	NA
UHGV-0142107_6	PHROG	phrog_538	minor tail protein	tail
UHGV-0142107_6	UniRef90	UniRef90_A0A1I3HJS7	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0142107_6	eggNOG-mapper	1121087.AUCK01000002_gene2497	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0142107_6	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0142107_6	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0142107_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0142107_7	UniRef90	UniRef90_A0A1I3HK03	Phage tail protein	NA
UHGV-0142107_7	eggNOG-mapper	411470.RUMGNA_02077	COG NOG18823 non supervised orthologous group	NA
UHGV-0142107_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-0142107_7	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0142107_8	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0142107_8	UniRef90	UniRef90_A7A6B5	Putative ATP synthase F0, A subunit	NA
UHGV-0142107_8	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0142107_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0142107_9	PHROG	phrog_706	NA	unknown function
UHGV-0142107_9	UniRef90	UniRef90_A0A1C5VU91	Bacteriophage Gp15 protein	NA
UHGV-0142107_9	eggNOG-mapper	1125725.HMPREF1325_1338	Bacteriophage Gp15 protein	NA
UHGV-0142107_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0142107_9	Structural annotation	PF06854	NA	NA
UHGV-0142107_10	Structural annotation	PF20378	NA	NA
UHGV-0142107_11	PHROG	phrog_3099	NA	unknown function
UHGV-0142107_11	eggNOG-mapper	1125725.HMPREF1325_1337	NA	NA
UHGV-0142107_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0142107_12	PHROG	phrog_3266	tail completion	connector
UHGV-0142107_12	Structural annotation	PF12691	NA	NA
UHGV-0142107_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0142107_13	UniRef90	UniRef90_UPI001A9B9821	capsid protein	NA
UHGV-0142107_13	eggNOG-mapper	525255.HMPREF0077_0381	Minor capsid protein	NA
UHGV-0142107_13	Structural annotation	PF11114	NA	NA
UHGV-0142107_14	PHROG	phrog_3366	NA	unknown function
UHGV-0142107_14	Pfam	PF20536	NA	DUF6751
UHGV-0142107_14	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0142107_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0142107_16	PHROG	phrog_212	major head protein	head and packaging
UHGV-0142107_16	UniRef90	UniRef90_A0A412FGZ1	Phage capsid protein	NA
UHGV-0142107_16	eggNOG-mapper	318464.IO99_00580	NA	NA
UHGV-0142107_16	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0142107_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0142107_17	UniRef90	UniRef90_UPI00164B0393	phage scaffolding protein	NA
UHGV-0142107_17	eggNOG-mapper	411460.RUMTOR_02088	COG NOG36366 non supervised orthologous group	NA
UHGV-0142107_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0142107_17	Structural annotation	PF06810	NA	NA
UHGV-0142107_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0142107_19	UniRef90	UniRef90_UPI00164C8416	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0142107_19	eggNOG-mapper	1292035.H476_1017	NA	NA
UHGV-0142107_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0142107_19	COG	COG2369	NA	NA
UHGV-0142107_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0142107_20	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0142107_20	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0142107_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0142107_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0142107_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0142107_21	UniRef90	UniRef90_R7N5K9	Terminase_3 domain-containing protein	NA
UHGV-0142107_21	eggNOG-mapper	1235790.C805_00040	Phage terminase large subunit	NA
UHGV-0142107_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0142107_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0142107_21	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0142107_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0142107_22	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0142107_22	UniRef90	UniRef90_UPI00164AF8F0	terminase small subunit	NA
UHGV-0142107_22	eggNOG-mapper	1415774.U728_838	terminase, small subunit	NA
UHGV-0142107_22	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0142107_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0142107_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0142107_22	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0142107_23	eggNOG-mapper	411463.EUBVEN_01842	NA	NA
UHGV-0142107_24	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0142107_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0142107_24	UniRef90	UniRef90_UPI001C034698	tyrosine-type recombinase/integrase	NA
UHGV-0142107_24	eggNOG-mapper	1235811.HMPREF0653_00737	Belongs to the 'phage' integrase family	NA
UHGV-0142107_24	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0142107_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0142107_24	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0142107_24	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0142107_25	KOfam	K03040	rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]	NA
UHGV-0142107_25	UniRef90	UniRef90_R7QYD6	DNA-directed RNA polymerase subunit alpha	NA
UHGV-0142107_25	eggNOG-mapper	1541959.KQ51_00203	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	NA
UHGV-0142107_25	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-0142107_25	COG	COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	NA
UHGV-0142107_25	Structural annotation	PF03118, NF005841	NA	NA
UHGV-0142107_29	eggNOG-mapper	536232.CLM_1636	NA	NA
UHGV-0142107_29	Structural annotation	PF17457	NA	NA
UHGV-0142107_30	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0142107_30	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0142107_30	UniRef90	UniRef90_A0A1Q6JBY5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0142107_30	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0142107_30	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0142107_30	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0142107_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0142107_30	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0142107_31	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0142107_31	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0142107_31	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0142107_31	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0142107_31	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0142107_32	PHROG	phrog_874	NA	unknown function
UHGV-0142107_32	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0142107_32	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0142107_32	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0142107_33	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0142107_33	UniRef90	UniRef90_U2DJA0	Restriction alleviation protein, Lar family	NA
UHGV-0142107_33	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0142107_33	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0142107_33	Structural annotation	PF14354, TIGR03655, TIGR02501	NA	NA
UHGV-0142107_35	PHROG	phrog_98	NA	unknown function
UHGV-0142107_35	UniRef90	UniRef90_A0A412FGY3	YopX domain-containing protein	NA
UHGV-0142107_35	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0142107_35	Pfam	PF09643	YopX protein	YopX
UHGV-0142107_35	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0142107_35	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0142107_36	eggNOG-mapper	397288.C806_00098	NA	NA
UHGV-0142107_38	PHROG	phrog_17690	NA	unknown function
UHGV-0142107_38	eggNOG-mapper	33035.JPJF01000107_gene432	NA	NA
UHGV-0142107_39	PHROG	phrog_16304	NA	unknown function
UHGV-0142107_39	UniRef90	UniRef90_A0A3R6H2J6	NA	NA
UHGV-0142107_39	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0142107_39	Pfam	PF19808	NA	DUF6291
UHGV-0142107_39	Structural annotation	PF19808	NA	NA
UHGV-0142107_40	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0142107_40	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0142107_40	UniRef90	UniRef90_A0A6N3H631	Endodeoxyribonuclease RusA	NA
UHGV-0142107_40	eggNOG-mapper	1399942.U3PDU0_9CAUD	magnesium ion binding	NA
UHGV-0142107_40	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0142107_41	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-0142107_41	UniRef90	UniRef90_UPI001C016064	ORF6C domain-containing protein	NA
UHGV-0142107_41	eggNOG-mapper	1304866.K413DRAFT_3008	Phage regulatory protein	NA
UHGV-0142107_41	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0142107_41	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0142107_41	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0142107_41	Structural annotation	PF10552, PF10543, TIGR02681, COG3646	NA	NA
UHGV-0142107_42	PHROG	phrog_7566	NA	unknown function
UHGV-0142107_42	UniRef90	UniRef90_A0A373CFM5	ClpX-type ZB domain-containing protein	NA
UHGV-0142107_42	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-0142107_43	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0142107_43	UniRef90	UniRef90_A0A174WPU3	Prophage Lp1 protein 19	NA
UHGV-0142107_43	eggNOG-mapper	742733.HMPREF9469_01848	NA	NA
UHGV-0142107_43	Pfam	PF12684	NA	DUF3799
UHGV-0142107_43	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0142107_43	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0142107_44	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0142107_44	UniRef90	UniRef90_A0A6N7W7U3	Recombinase RecT	NA
UHGV-0142107_44	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0142107_44	Structural annotation	TIGR01913, COG3723	NA	NA
UHGV-0142107_45	PHROG	phrog_1499	NA	unknown function
UHGV-0142107_45	UniRef90	UniRef90_A0A316M6R3	AAA_23 domain-containing protein	NA
UHGV-0142107_45	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-0142107_45	PADLOC	AAA_15	NA	NA
UHGV-0142107_45	Pfam	PF13476	AAA domain	AAA_23
UHGV-0142107_45	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0142107_45	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0142107_47	Structural annotation	PF11127	NA	NA
UHGV-0142107_48	UniRef90	UniRef90_UPI001C033D96	helix-turn-helix domain-containing protein	NA
UHGV-0142107_48	Structural annotation	PF13443, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-0142107_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0142107_50	UniRef90	UniRef90_UPI00156E2D91	helix-turn-helix domain-containing protein	NA
UHGV-0142107_50	eggNOG-mapper	655812.HMPREF0061_0222	Helix-turn-helix XRE-family like proteins	NA
UHGV-0142107_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0142107_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0142107_50	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0142107_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0142107_51	UniRef90	UniRef90_A0A3A6GF44	XRE family transcriptional regulator	NA
UHGV-0142107_51	eggNOG-mapper	1235802.C823_04750	Helix-turn-helix XRE-family like proteins	NA
UHGV-0142107_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0142107_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0142107_51	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0142107_52	PHROG	phrog_87	metallo-protease	other
UHGV-0142107_52	UniRef90	UniRef90_A0A3R5ZQW8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0142107_52	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0142107_52	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0142107_52	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0142107_52	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0142107_53	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0142107_53	PHROG	phrog_16726	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0142107_53	UniRef90	UniRef90_A0A3R6CIB5	HNH endonuclease	NA
UHGV-0142107_53	eggNOG-mapper	386415.NT01CX_1757	HNH endonuclease	NA
UHGV-0142107_53	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0142107_53	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0142107_53	Structural annotation	PF01844, NF040563, COG1403	NA	NA
UHGV-0142107_54	KOfam	K14059	int; integrase	NA
UHGV-0142107_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0142107_54	UniRef90	UniRef90_A0A6L6L8L1	Tyrosine-type recombinase/integrase	NA
UHGV-0142107_54	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0142107_54	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0142107_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0142107_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0142107_54	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA