UHGV-0142245

Genome information

Genome length 29,591 bps

CDS count 39

Completeness 71.91% (medium-quality)

geNomad score 0.9435

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142245
vOTU ID	vOTU-023141
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_411003
BioSample	SAMN05414903
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.91% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9435
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.3
Jumbo phage	No

Genome content
Genome length	29,591 bps
GC content	55.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	87.30%
Average CDS length	665.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142245_1	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0142245_1	Structural annotation	PF10097, COG5346	NA	NA
UHGV-0142245_7	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0142245_7	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0142245_7	UniRef90	UniRef90_A0A158G2I4	LexA repressor	NA
UHGV-0142245_7	eggNOG-mapper	264198.Reut_A2380	Peptidase S24-like	NA
UHGV-0142245_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0142245_7	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0142245_7	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0142245_7	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0142245_13	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0142245_13	PHROG	phrog_200	lipoprotein	other
UHGV-0142245_13	UniRef90	UniRef90_A0A808A1K5	Serine protease	NA
UHGV-0142245_13	eggNOG-mapper	1484158.PSNIH1_18910	SPFH domain / Band 7 family	NA
UHGV-0142245_13	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0142245_13	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0142245_13	Structural annotation	PF01145, MF_01562, TIGR01932, COG0330	NA	NA
UHGV-0142245_15	Structural annotation	PF06530, MF_00245, NF008895, COG1595	NA	NA
UHGV-0142245_16	KOfam	K01972	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	NA
UHGV-0142245_16	PHROG	phrog_3989	NA	unknown function
UHGV-0142245_16	UniRef90	UniRef90_UPI000C1BAF22	BRCT domain-containing protein	NA
UHGV-0142245_16	eggNOG-mapper	1121287.AUMU01000005_gene3297	breast cancer carboxy-terminal domain	NA
UHGV-0142245_16	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0142245_16	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0142245_16	Structural annotation	PF00533, NF004844	NA	NA
UHGV-0142245_17	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0142245_17	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0142245_17	UniRef90	UniRef90_UPI0013F5E9F3	HNH endonuclease	NA
UHGV-0142245_17	eggNOG-mapper	1121324.CLIT_8c00820	HNH endonuclease	NA
UHGV-0142245_17	AcrCatalog	cluster_19695	NA	NA
UHGV-0142245_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0142245_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0142245_17	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0142245_18	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0142245_18	UniRef90	UniRef90_UPI0017862672	phage terminase small subunit P27 family	NA
UHGV-0142245_18	eggNOG-mapper	69279.BG36_11255	Phage terminase, small subunit	NA
UHGV-0142245_18	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0142245_18	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0142245_18	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0142245_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0142245_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0142245_19	UniRef90	UniRef90_A0A6L6YGT4	Terminase large subunit	NA
UHGV-0142245_19	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-0142245_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0142245_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0142245_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0142245_19	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0142245_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0142245_20	UniRef90	UniRef90_A0A519EFS1	Phage portal protein	NA
UHGV-0142245_20	eggNOG-mapper	1005048.CFU_3367	Phage portal protein	NA
UHGV-0142245_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0142245_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0142245_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0142245_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0142245_21	KOfam	K06904	NA	NA
UHGV-0142245_21	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0142245_21	UniRef90	UniRef90_UPI000671688B	HK97 family phage prohead protease	NA
UHGV-0142245_21	eggNOG-mapper	1397284.AYMN01000081_gene2457	Prohead protease	NA
UHGV-0142245_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0142245_21	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0142245_21	COG	COG3740	Phage head maturation protease	NA
UHGV-0142245_21	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0142245_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0142245_22	UniRef90	UniRef90_UPI000671041A	phage major capsid protein	NA
UHGV-0142245_22	eggNOG-mapper	742821.HMPREF9464_01831	Phage capsid family	NA
UHGV-0142245_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0142245_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0142245_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0142245_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0142245_23	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0142245_23	UniRef90	UniRef90_UPI0006713445	head-tail connector protein	NA
UHGV-0142245_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0142245_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0142245_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0142245_24	PHROG	phrog_25	head closure Hc1	connector
UHGV-0142245_24	UniRef90	UniRef90_A0A2Z5MTJ5	Head-tail adaptor protein	NA
UHGV-0142245_24	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-0142245_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0142245_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0142245_25	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0142245_25	UniRef90	UniRef90_A0A7U6JN97	Putative membrane protein	NA
UHGV-0142245_25	eggNOG-mapper	157783.LK03_15415	NA	NA
UHGV-0142245_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0142245_25	Structural annotation	TIGR01725	NA	NA
UHGV-0142245_26	PHROG	phrog_209	portal protein	head and packaging
UHGV-0142245_26	UniRef90	UniRef90_K7ZYZ8	FIG111678: IS, phage, Tn Transposon-related functions	NA
UHGV-0142245_26	eggNOG-mapper	742821.HMPREF9464_01828	NA	NA
UHGV-0142245_26	Structural annotation	PF09646	NA	NA
UHGV-0142245_27	PHROG	phrog_165	tail sheath	tail
UHGV-0142245_27	UniRef90	UniRef90_A0A5B7ZKE4	Phage tail protein	NA
UHGV-0142245_27	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-0142245_27	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0142245_27	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0142245_27	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0142245_27	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0142245_28	PHROG	phrog_185	tail tube protein	tail
UHGV-0142245_28	UniRef90	UniRef90_A0A7U6GU04	Putative membrane protein	NA
UHGV-0142245_28	eggNOG-mapper	742821.HMPREF9464_01826	Phage tail tube protein	NA
UHGV-0142245_28	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0142245_28	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0142245_29	UniRef90	UniRef90_A0A2M9VHD7	Phage tail assembly protein	NA
UHGV-0142245_29	eggNOG-mapper	1221522.B723_10650	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0142245_29	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0142245_29	Structural annotation	PF10109, COG4518	NA	NA
UHGV-0142245_30	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-0142245_30	UniRef90	UniRef90_UPI00141333AA	phage tail tape measure protein	NA
UHGV-0142245_30	eggNOG-mapper	742821.HMPREF9464_01824	Phage-related minor tail protein	NA
UHGV-0142245_30	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0142245_30	COG	COG5283	Phage-related tail protein	NA
UHGV-0142245_30	Structural annotation	TIGR01760	NA	NA
UHGV-0142245_31	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0142245_31	UniRef90	UniRef90_A0A5B7ZLP1	DNA_circ_N domain-containing protein	NA
UHGV-0142245_31	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0142245_31	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0142245_31	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0142245_31	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0142245_32	PHROG	phrog_177	tail protein	tail
UHGV-0142245_32	UniRef90	UniRef90_A0A2W4U8P8	Baseplate protein	NA
UHGV-0142245_32	eggNOG-mapper	742821.HMPREF9464_01822	Tail protein	NA
UHGV-0142245_32	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0142245_32	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0142245_32	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0142245_34	PHROG	phrog_20516	NA	unknown function
UHGV-0142245_34	UniRef90	UniRef90_E7H532	Prophage MuSo2	NA
UHGV-0142245_34	eggNOG-mapper	742821.HMPREF9464_01820	Bacteriophage Mu Gp45 protein	NA
UHGV-0142245_34	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0142245_34	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0142245_34	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0142245_34	COG	COG4384	NA	NA
UHGV-0142245_35	PHROG	phrog_180	tail protein	tail
UHGV-0142245_35	UniRef90	UniRef90_UPI001A9577B3	phage GP46 family protein	NA
UHGV-0142245_35	eggNOG-mapper	742821.HMPREF9464_01818	Phage protein GP46	NA
UHGV-0142245_35	Pfam	PF07409	NA	GP46
UHGV-0142245_35	COG	COG4381	NA	NA
UHGV-0142245_35	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0142245_36	PHROG	phrog_6	baseplate protein	tail
UHGV-0142245_36	UniRef90	UniRef90_A0A5B7ZKF1	Baseplate J/gp47 family protein	NA
UHGV-0142245_36	eggNOG-mapper	742821.HMPREF9464_01817	Baseplate J family protein	NA
UHGV-0142245_36	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0142245_36	COG	COG3299	NA	NA
UHGV-0142245_36	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0142245_37	PHROG	phrog_203	tail protein	tail
UHGV-0142245_37	UniRef90	UniRef90_A0A6N9TJ05	NA	NA
UHGV-0142245_37	eggNOG-mapper	742821.HMPREF9464_01816	NA	NA
UHGV-0142245_37	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0142245_37	COG	COG3778	NA	NA
UHGV-0142245_37	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0142245_38	PHROG	phrog_9116	tail protein	tail
UHGV-0142245_38	UniRef90	UniRef90_A0A5B7ZM63	Tail fiber protein	NA
UHGV-0142245_38	eggNOG-mapper	556269.ACDQ01000006_gene1585	tail collar domain protein	NA
UHGV-0142245_38	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0142245_38	COG	COG4675	Phage tail collar domain	NA
UHGV-0142245_38	Structural annotation	PF07484, COG4675	NA	NA