UHGV-0142301

Genome information

vOTU vOTU-020171

Genome length 31,956 bps

CDS count 41

Completeness 64.37% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142301
vOTU ID	vOTU-020171
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_403755
BioSample	SAMN05414978
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.83
Jumbo phage	No

Genome content
Genome length	31,956 bps
GC content	34.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	91.88%
Average CDS length	719.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142301_1	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0142301_1	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0142301_3	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-0142301_3	eggNOG-mapper	1499968.TCA2_4616	DNA catabolic process, exonucleolytic	NA
UHGV-0142301_3	COG	COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	NA
UHGV-0142301_3	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-0142301_5	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0142301_5	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0142301_5	UniRef90	UniRef90_A0A843GSV7	RECA_3 domain-containing protein	NA
UHGV-0142301_5	eggNOG-mapper	469616.FMAG_01147	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0142301_5	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0142301_5	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0142301_5	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0142301_7	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0142301_7	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0142301_7	UniRef90	UniRef90_A0A843GPT9	DNA-directed DNA polymerase	NA
UHGV-0142301_7	eggNOG-mapper	1158345.JNLL01000001_gene729	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-0142301_7	Pfam	PF02811	PHP domain	PHP
UHGV-0142301_7	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0142301_7	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0142301_7	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0142301_7	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-0142301_7	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0142301_7	Structural annotation	PF07733, PF02811, PF17657, PF14579, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-0142301_8	PHROG	phrog_236	nucleotide kinase	other
UHGV-0142301_8	UniRef90	UniRef90_UPI001D04CE99	NA	NA
UHGV-0142301_8	eggNOG-mapper	1123263.AUKY01000015_gene1590	NA	NA
UHGV-0142301_8	Pfam	PF11753	NA	DUF3310
UHGV-0142301_8	Structural annotation	PF11753	NA	NA
UHGV-0142301_10	Structural annotation	PF08804	NA	NA
UHGV-0142301_11	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0142301_11	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0142301_11	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-0142301_11	eggNOG-mapper	573061.Clocel_1457	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0142301_11	PADLOC	drt-UG29	DRT	DRT
UHGV-0142301_11	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0142301_11	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0142301_11	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0142301_11	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0142301_14	PHROG	phrog_937	hemolysin	other
UHGV-0142301_14	eggNOG-mapper	742740.HMPREF9474_03172	NA	NA
UHGV-0142301_15	PHROG	phrog_1220	head protein	head and packaging
UHGV-0142301_15	UniRef90	UniRef90_A0A6B3YJZ4	Phage tail protein (Fragment)	NA
UHGV-0142301_15	eggNOG-mapper	1033737.CAEV01000028_gene283	NA	NA
UHGV-0142301_15	Structural annotation	PF08931, PF20747	NA	NA
UHGV-0142301_16	PHROG	phrog_538	minor tail protein	tail
UHGV-0142301_16	UniRef90	UniRef90_UPI000717641B	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0142301_16	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0142301_16	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0142301_16	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0142301_17	PHROG	phrog_36410	NA	unknown function
UHGV-0142301_17	UniRef90	UniRef90_A0A7X9C3E1	Phage tail family protein	NA
UHGV-0142301_17	eggNOG-mapper	536232.CLM_2045	Phage tail protein	NA
UHGV-0142301_17	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0142301_17	COG	COG4722	Phage-related protein YomH	NA
UHGV-0142301_17	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0142301_18	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0142301_18	UniRef90	UniRef90_A0A351TJS6	Phage tail tape measure protein	NA
UHGV-0142301_18	eggNOG-mapper	1410670.JHXF01000015_gene2302	Phage tail tape measure protein, TP901 family	NA
UHGV-0142301_18	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0142301_18	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0142301_18	COG	COG5283	Phage-related tail protein	NA
UHGV-0142301_18	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0142301_19	PHROG	phrog_6280	NA	unknown function
UHGV-0142301_19	UniRef90	UniRef90_A0A8J6PH67	Esterase	NA
UHGV-0142301_19	eggNOG-mapper	445335.CBN_3078	NA	NA
UHGV-0142301_20	PHROG	phrog_6686	tail tube protein	tail
UHGV-0142301_20	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0142301_20	eggNOG-mapper	871584.D9ZNE2_9CAUD	NA	NA
UHGV-0142301_20	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0142301_21	PHROG	phrog_7585	NA	unknown function
UHGV-0142301_21	eggNOG-mapper	1196322.A370_04060	NA	NA
UHGV-0142301_22	eggNOG-mapper	632292.Calhy_0769	Phage virion morphogenesis	NA
UHGV-0142301_22	COG	COG5005	NA	NA
UHGV-0142301_22	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0142301_23	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0142301_24	PHROG	phrog_4020	NA	unknown function
UHGV-0142301_24	eggNOG-mapper	1121342.AUCO01000012_gene1692	NA	NA
UHGV-0142301_26	PHROG	phrog_29	major head protein	head and packaging
UHGV-0142301_26	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0142301_26	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-0142301_26	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0142301_26	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0142301_27	eggNOG-mapper	1158612.I580_01911	NA	NA
UHGV-0142301_27	Structural annotation	PF02924	NA	NA
UHGV-0142301_28	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0142301_28	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0142301_29	PHROG	phrog_1315	NA	unknown function
UHGV-0142301_30	Structural annotation	PF06133	NA	NA
UHGV-0142301_32	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0142301_32	PHROG	phrog_3895	ADP-ribosyltransferase exoenzyme toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0142301_32	UniRef90	UniRef90_A0A2A8H7K5	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0142301_32	eggNOG-mapper	711393.AYRX01000022_gene753	nuclear chromosome segregation	NA
UHGV-0142301_32	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0142301_32	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0142301_33	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0142301_33	UniRef90	UniRef90_A0A349YJR5	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0142301_33	eggNOG-mapper	1567015.A0A0A7RUI1_9VIRU	Phage Mu protein F like protein	NA
UHGV-0142301_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0142301_34	UniRef90	UniRef90_A0A843GSM3	Phage portal protein	NA
UHGV-0142301_34	eggNOG-mapper	1121342.AUCO01000012_gene1700	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0142301_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0142301_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0142301_35	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0142301_35	PHROG	phrog_435	endolysin	lysis
UHGV-0142301_35	UniRef90	UniRef90_UPI001EE924D3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0142301_35	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0142301_35	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0142301_35	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0142301_35	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0142301_35	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0142301_36	PHROG	phrog_774	NA	unknown function
UHGV-0142301_36	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0142301_37	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0142301_37	UniRef90	UniRef90_A0A385Q0Q2	NA	NA
UHGV-0142301_37	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0142301_37	Pfam	PF14359	NA	DUF4406
UHGV-0142301_37	Structural annotation	PF14359	NA	NA
UHGV-0142301_38	PHROG	phrog_443	holin	lysis
UHGV-0142301_38	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-0142301_38	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0142301_38	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0142301_38	Structural annotation	PF16945	NA	NA
UHGV-0142301_39	PHROG	phrog_959	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0142301_39	UniRef90	UniRef90_UPI000773ECC9	HNH endonuclease	NA
UHGV-0142301_39	eggNOG-mapper	1229751.R9QM99_9CAUD	HNH endonuclease	NA
UHGV-0142301_39	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0142301_39	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0142301_39	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0142301_39	Structural annotation	PF13392, TIGR01453	NA	NA
UHGV-0142301_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0142301_40	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0142301_40	UniRef90	UniRef90_A0A349YI29	PBSX family phage terminase large subunit	NA
UHGV-0142301_40	eggNOG-mapper	666686.B1NLA3E_01190	phage terminase, large subunit	NA
UHGV-0142301_40	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0142301_40	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0142301_40	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0142301_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0142301_40	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0142301_41	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0142301_41	UniRef90	UniRef90_A0A843GSL4	Helix-turn-helix transcriptional regulator	NA
UHGV-0142301_41	eggNOG-mapper	742733.HMPREF9469_01828	transposase activity	NA
UHGV-0142301_41	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0142301_41	COG	COG2963	Transposase InsE and inactivated derivatives	NA