UHGV-0142333

Genome information

Genome length 36,797 bps

CDS count 55

Completeness 98.75% (high-quality)

geNomad score 0.9735

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142333
vOTU ID	vOTU-076572
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_435123
BioSample	SAMN06016414
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.75% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9735
Virus hallmark genes (geNomad)	18
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	73.34
Jumbo phage	No

Genome content
Genome length	36,797 bps
GC content	44.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	88.08%
Average CDS length	592.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142333_2	PHROG	phrog_4105	NA	unknown function
UHGV-0142333_2	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0142333_3	KOfam	K14059	int; integrase	NA
UHGV-0142333_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0142333_3	UniRef90	UniRef90_UPI000F0C2855	tyrosine-type recombinase/integrase	NA
UHGV-0142333_3	eggNOG-mapper	568816.Acin_1821	Phage integrase family	NA
UHGV-0142333_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0142333_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0142333_3	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0142333_4	PHROG	phrog_2837	tail protein	tail
UHGV-0142333_4	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-0142333_4	eggNOG-mapper	520709.F985_01945	NA	NA
UHGV-0142333_4	Pfam	PF14301	NA	DUF4376
UHGV-0142333_4	Structural annotation	PF14301	NA	NA
UHGV-0142333_6	PHROG	phrog_4209	tail fiber protein	tail
UHGV-0142333_6	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0142333_6	Structural annotation	NF012201	NA	NA
UHGV-0142333_7	PHROG	phrog_521	tail protein	tail
UHGV-0142333_7	UniRef90	UniRef90_UPI00094E1B6F	NA	NA
UHGV-0142333_7	eggNOG-mapper	1536772.R70723_06760	NA	NA
UHGV-0142333_7	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0142333_7	COG	COG3778	NA	NA
UHGV-0142333_7	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0142333_8	PHROG	phrog_6	baseplate protein	tail
UHGV-0142333_8	UniRef90	UniRef90_UPI0009F5CC39	baseplate J/gp47 family protein	NA
UHGV-0142333_8	eggNOG-mapper	1120998.AUFC01000013_gene2953	baseplate J-like protein	NA
UHGV-0142333_8	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0142333_8	COG	COG3299	NA	NA
UHGV-0142333_8	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0142333_9	PHROG	phrog_120	baseplate protein	tail
UHGV-0142333_9	UniRef90	UniRef90_UPI000F8EF05A	NA	NA
UHGV-0142333_9	eggNOG-mapper	1151292.QEW_1754	NA	NA
UHGV-0142333_9	Pfam	PF10934	NA	DUF2634
UHGV-0142333_9	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0142333_10	PHROG	phrog_579	NA	unknown function
UHGV-0142333_10	UniRef90	UniRef90_A0A7X2XI28	NA	NA
UHGV-0142333_10	eggNOG-mapper	393480.FNP_1701	NA	NA
UHGV-0142333_10	Pfam	PF10844	NA	DUF2577
UHGV-0142333_10	Structural annotation	PF10844	NA	NA
UHGV-0142333_11	PHROG	phrog_400	tail protein	tail
UHGV-0142333_11	eggNOG-mapper	293826.Amet_2427	Late control gene D protein	NA
UHGV-0142333_11	COG	COG3500	NA	NA
UHGV-0142333_11	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0142333_12	PHROG	phrog_5184	NA	unknown function
UHGV-0142333_12	UniRef90	UniRef90_A0A7X5CTQ5	Phage portal protein	NA
UHGV-0142333_12	eggNOG-mapper	97138.C820_00603	LysM domain	NA
UHGV-0142333_12	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0142333_12	Structural annotation	PF05632, TIGR02126, COG3499	NA	NA
UHGV-0142333_13	PHROG	phrog_19074	NA	unknown function
UHGV-0142333_13	UniRef90	UniRef90_R8W0E5	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0142333_13	eggNOG-mapper	428127.EUBDOL_01214	Phage tail tape measure protein, TP901 family	NA
UHGV-0142333_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0142333_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0142333_13	COG	COG3883	NA	NA
UHGV-0142333_13	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0142333_14	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0142333_14	UniRef90	UniRef90_A0A162J0C0	Phage portal protein	NA
UHGV-0142333_14	eggNOG-mapper	1095747.HMPREF1049_2003	NA	NA
UHGV-0142333_14	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0142333_15	PHROG	phrog_365	tail protein	tail
UHGV-0142333_15	UniRef90	UniRef90_UPI00094F2D29	phage tail tube protein	NA
UHGV-0142333_15	eggNOG-mapper	393480.FNP_1694	Phage tail tube protein	NA
UHGV-0142333_15	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0142333_15	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0142333_16	PHROG	phrog_1480	tail sheath	tail
UHGV-0142333_16	UniRef90	UniRef90_A0A7X2XHA8	Phage tail sheath protein	NA
UHGV-0142333_16	eggNOG-mapper	393480.FNP_1693	Phage tail sheath C-terminal domain	NA
UHGV-0142333_16	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0142333_16	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0142333_16	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0142333_17	PHROG	phrog_525	NA	unknown function
UHGV-0142333_17	Pfam	PF20765	NA	DUF6838
UHGV-0142333_17	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0142333_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0142333_18	UniRef90	UniRef90_A0A7X2XHE9	HK97 gp10 family phage protein	NA
UHGV-0142333_18	eggNOG-mapper	293826.Amet_2418	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0142333_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0142333_18	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0142333_19	PHROG	phrog_25	head closure Hc1	connector
UHGV-0142333_19	UniRef90	UniRef90_UPI0018E290DF	phage head closure protein	NA
UHGV-0142333_19	eggNOG-mapper	641107.CDLVIII_1341	Phage head-tail adaptor	NA
UHGV-0142333_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0142333_19	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0142333_19	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0142333_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0142333_20	UniRef90	UniRef90_UPI00156EB859	head-tail connector protein	NA
UHGV-0142333_20	eggNOG-mapper	1285586.H131_21297	Phage gp6-like head-tail connector protein	NA
UHGV-0142333_20	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0142333_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0142333_21	PHROG	phrog_6865	NA	unknown function
UHGV-0142333_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0142333_22	UniRef90	UniRef90_A0A1X1Q4R9	Phage major capsid protein, HK97 family	NA
UHGV-0142333_22	eggNOG-mapper	903814.ELI_1299	Phage capsid family	NA
UHGV-0142333_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0142333_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0142333_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0142333_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0142333_23	KOfam	K06904	NA	NA
UHGV-0142333_23	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0142333_23	UniRef90	UniRef90_UPI000A100165	HK97 family phage prohead protease	NA
UHGV-0142333_23	eggNOG-mapper	1196031.ALEG01000039_gene1815	Phage prohead protease, HK97 family	NA
UHGV-0142333_23	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0142333_23	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0142333_23	COG	COG3740	Phage head maturation protease	NA
UHGV-0142333_23	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0142333_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0142333_24	UniRef90	UniRef90_A0A1M6G7J4	Phage portal protein, HK97 family	NA
UHGV-0142333_24	eggNOG-mapper	742738.HMPREF9460_01364	Portal protein	NA
UHGV-0142333_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0142333_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0142333_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0142333_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0142333_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0142333_25	UniRef90	UniRef90_UPI00094E5B34	terminase large subunit	NA
UHGV-0142333_25	eggNOG-mapper	1304866.K413DRAFT_1222	Terminase	NA
UHGV-0142333_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0142333_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0142333_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0142333_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0142333_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0142333_26	UniRef90	UniRef90_UPI000A0F796A	P27 family phage terminase small subunit	NA
UHGV-0142333_26	eggNOG-mapper	742738.HMPREF9460_01362	phage terminase small subunit	NA
UHGV-0142333_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0142333_26	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0142333_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0142333_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0142333_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0142333_28	UniRef90	UniRef90_UPI00094EC201	HNH endonuclease	NA
UHGV-0142333_28	eggNOG-mapper	1414720.CBYM010000002_gene577	HNH nucleases	NA
UHGV-0142333_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0142333_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0142333_30	UniRef90	UniRef90_UPI0003FF8762	NA	NA
UHGV-0142333_30	eggNOG-mapper	1262914.BN533_01942	NA	NA
UHGV-0142333_30	Structural annotation	PF07374, MF_00245, TIGR02980, COG2739	NA	NA
UHGV-0142333_31	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0142333_31	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0142333_31	UniRef90	UniRef90_A0A3C1IQM4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0142333_31	eggNOG-mapper	521098.Aaci_1498	Endodeoxyribonuclease RusA	NA
UHGV-0142333_31	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0142333_31	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0142333_31	Structural annotation	PF05866, MF_00107, NF007305, COG4570	NA	NA
UHGV-0142333_32	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0142333_32	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-0142333_32	eggNOG-mapper	927704.SELR_11130	NA	NA
UHGV-0142333_32	Structural annotation	PF21578	NA	NA
UHGV-0142333_34	PHROG	phrog_1672	NA	unknown function
UHGV-0142333_39	PHROG	phrog_15609	NA	unknown function
UHGV-0142333_39	UniRef90	UniRef90_UPI0013D36094	NA	NA
UHGV-0142333_39	eggNOG-mapper	1501230.ET33_21155	NA	NA
UHGV-0142333_39	Pfam	PF11300	NA	DUF3102
UHGV-0142333_39	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0142333_39	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0142333_40	PHROG	phrog_8470	NA	unknown function
UHGV-0142333_40	UniRef90	UniRef90_R5PSC3	Ribosomal_S27 domain-containing protein	NA
UHGV-0142333_40	eggNOG-mapper	1395513.P343_08070	PcfJ-like protein	NA
UHGV-0142333_40	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0142333_40	Structural annotation	PF14284	NA	NA
UHGV-0142333_41	UniRef90	UniRef90_UPI000689CC9F	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0142333_41	eggNOG-mapper	1157490.EL26_01850	NA	NA
UHGV-0142333_41	Structural annotation	PF14058	NA	NA
UHGV-0142333_44	PHROG	phrog_26484	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0142333_44	UniRef90	UniRef90_R4KDF2	PC4 domain-containing protein	NA
UHGV-0142333_44	eggNOG-mapper	86416.Clopa_3760	Transcriptional Coactivator p15 (PC4)	NA
UHGV-0142333_44	Pfam	PF02229	Transcriptional Coactivator p15 (PC4)	PC4
UHGV-0142333_44	COG	COG4443	NA	NA
UHGV-0142333_44	Structural annotation	COG4443	NA	NA
UHGV-0142333_45	UniRef90	UniRef90_R6XZA3	LysM domain protein	NA
UHGV-0142333_45	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0142333_48	Structural annotation	PF13033	NA	NA
UHGV-0142333_49	UniRef90	UniRef90_A0A098AVW3	Lambda repressor-like, DNA-binding domain	NA
UHGV-0142333_49	eggNOG-mapper	864563.HMPREF9166_1836	NA	NA
UHGV-0142333_49	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0142333_50	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0142333_50	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0142333_50	UniRef90	UniRef90_A0A0D8J2T5	Repressor LexA	NA
UHGV-0142333_50	eggNOG-mapper	1121423.JONT01000002_gene2372	Peptidase S24-like	NA
UHGV-0142333_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0142333_50	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0142333_50	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0142333_50	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0142333_51	PHROG	phrog_1847	NA	unknown function
UHGV-0142333_51	UniRef90	UniRef90_A0A174D4Z6	T5orf172 domain	NA
UHGV-0142333_51	eggNOG-mapper	1123511.KB905857_gene1688	T5orf172	NA
UHGV-0142333_51	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0142333_51	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0142333_51	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0142333_53	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0142333_53	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0142333_53	UniRef90	UniRef90_A0A3C1ILB9	HicB-like domain-containing protein	NA
UHGV-0142333_53	eggNOG-mapper	335541.Swol_1569	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0142333_53	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0142333_53	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0142333_53	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0142333_54	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0142333_54	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0142333_54	UniRef90	UniRef90_A0A3A9BKS1	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0142333_54	eggNOG-mapper	768706.Desor_1928	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0142333_54	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0142333_54	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0142333_54	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0142333_55	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0142333_55	PHROG	phrog_95	integrase	integration and excision
UHGV-0142333_55	UniRef90	UniRef90_A0A0K2MDW5	Recombinase family protein	NA
UHGV-0142333_55	eggNOG-mapper	1211817.CCAT010000072_gene1162	Resolvase, N terminal domain	NA
UHGV-0142333_55	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0142333_55	Pfam	PF07508	Recombinase	Recombinase
UHGV-0142333_55	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0142333_55	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0142333_55	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA