UHGV-0142370

Genome information

Genome length 32,269 bps

CDS count 45

Completeness 71.61% (medium-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142370
vOTU ID	vOTU-018570
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_406947
BioSample	SAMN05414948
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.8
Jumbo phage	No

Genome content
Genome length	32,269 bps
GC content	40.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	91.72%
Average CDS length	661.40 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142370_1	Structural annotation	NF010187	NA	NA
UHGV-0142370_2	UniRef90	UniRef90_A0A6L8SWV5	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0142370_2	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0142370_2	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0142370_4	PHROG	phrog_17690	NA	unknown function
UHGV-0142370_4	eggNOG-mapper	476272.RUMHYD_03925	NA	NA
UHGV-0142370_6	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0142370_6	UniRef90	UniRef90_A0A373DE70	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0142370_6	eggNOG-mapper	1304866.K413DRAFT_1205	sulfate reduction	NA
UHGV-0142370_6	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0142370_7	Structural annotation	NF041197	NA	NA
UHGV-0142370_9	Structural annotation	PF17888	NA	NA
UHGV-0142370_13	PHROG	phrog_20593	NA	unknown function
UHGV-0142370_14	PHROG	phrog_8684	NA	unknown function
UHGV-0142370_14	UniRef90	UniRef90_A0A3A6GQT2	YopX domain-containing protein	NA
UHGV-0142370_14	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0142370_14	Pfam	PF09643	YopX protein	YopX
UHGV-0142370_14	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0142370_14	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0142370_15	Structural annotation	PF06107, COG4481	NA	NA
UHGV-0142370_17	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0142370_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0142370_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0142370_20	UniRef90	UniRef90_A0A412EKJ9	PBSX family phage terminase large subunit	NA
UHGV-0142370_20	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0142370_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0142370_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0142370_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0142370_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0142370_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0142370_20	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0142370_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0142370_21	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0142370_21	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0142370_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0142370_22	UniRef90	UniRef90_UPI001E5DFEB8	SGNH/GDSL hydrolase family protein	NA
UHGV-0142370_22	eggNOG-mapper	1122931.AUAE01000019_gene984	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0142370_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0142370_23	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0142370_23	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0142370_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0142370_23	COG	COG2369	NA	NA
UHGV-0142370_23	Structural annotation	PF06152	NA	NA
UHGV-0142370_24	PHROG	phrog_3754	NA	unknown function
UHGV-0142370_24	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0142370_25	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0142370_25	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0142370_26	PHROG	phrog_21718	NA	unknown function
UHGV-0142370_26	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0142370_27	PHROG	phrog_22984	NA	unknown function
UHGV-0142370_28	PHROG	phrog_16490	NA	unknown function
UHGV-0142370_28	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0142370_29	PHROG	phrog_20016	NA	unknown function
UHGV-0142370_29	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0142370_29	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0142370_29	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0142370_30	PHROG	phrog_28802	NA	unknown function
UHGV-0142370_30	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0142370_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0142370_31	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0142370_31	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0142370_31	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0142370_32	PHROG	phrog_544	major head protein	head and packaging
UHGV-0142370_32	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0142370_32	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0142370_32	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0142370_32	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0142370_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0142370_33	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0142370_34	PHROG	phrog_28328	NA	unknown function
UHGV-0142370_34	eggNOG-mapper	428125.CLOLEP_01381	NA	NA
UHGV-0142370_35	PHROG	phrog_1129	holin	lysis
UHGV-0142370_35	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0142370_35	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0142370_35	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0142370_35	Structural annotation	PF06946	NA	NA
UHGV-0142370_36	PHROG	phrog_3366	NA	unknown function
UHGV-0142370_36	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0142370_36	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0142370_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0142370_37	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0142370_37	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0142370_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0142370_37	Structural annotation	PF11114	NA	NA
UHGV-0142370_38	PHROG	phrog_3266	tail completion	connector
UHGV-0142370_38	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0142370_38	Structural annotation	PF12691	NA	NA
UHGV-0142370_39	PHROG	phrog_3099	NA	unknown function
UHGV-0142370_39	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0142370_39	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0142370_40	PHROG	phrog_11299	NA	unknown function
UHGV-0142370_40	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0142370_40	Structural annotation	PF10666	NA	NA
UHGV-0142370_41	PHROG	phrog_706	NA	unknown function
UHGV-0142370_41	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0142370_41	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0142370_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0142370_41	Structural annotation	PF06854	NA	NA
UHGV-0142370_42	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0142370_42	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0142370_42	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0142370_42	COG	COG1511	NA	NA
UHGV-0142370_42	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0142370_43	PHROG	phrog_1194	NA	unknown function
UHGV-0142370_43	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-0142370_43	Pfam	PF20458	NA	DUF6711
UHGV-0142370_43	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0142370_44	PHROG	phrog_18190	NA	unknown function
UHGV-0142370_44	UniRef90	UniRef90_UPI000E4C0A8F	bacterial Ig-like domain-containing protein	NA
UHGV-0142370_44	eggNOG-mapper	428125.CLOLEP_00457	endo-1,4-beta-xylanase activity	NA
UHGV-0142370_44	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0142370_44	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0142370_44	COG	COG0683	ABC-type branched-chain amino acid transport system, periplasmic component	NA
UHGV-0142370_44	Structural annotation	PF13306, PF07523, PF05113, NF033848, NF040978, COG3500	NA	NA