UHGV-0142398

Genome information

vOTU vOTU-020286

Genome length 31,204 bps

CDS count 46

Completeness 64.35% (medium-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142398
vOTU ID	vOTU-020286
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_430199
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.37
Jumbo phage	No

Genome content
Genome length	31,204 bps
GC content	45.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	85.26%
Average CDS length	581.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142398_1	UniRef90	UniRef90_U2C5R3	50S ribosomal protein L12P domain protein	NA
UHGV-0142398_2	PHROG	phrog_133	head maturation protease	head and packaging
UHGV-0142398_2	UniRef90	UniRef90_A0A7X2NKL2	Mu-like_gpT domain-containing protein	NA
UHGV-0142398_2	eggNOG-mapper	97139.C824_03380	serine-type endopeptidase activity	NA
UHGV-0142398_2	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0142398_2	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0142398_2	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0142398_3	PHROG	phrog_122	head decoration	head and packaging
UHGV-0142398_3	UniRef90	UniRef90_UPI001921F22A	NA	NA
UHGV-0142398_3	eggNOG-mapper	478749.BRYFOR_07538	NA	NA
UHGV-0142398_3	Pfam	PF09956	NA	DUF2190
UHGV-0142398_3	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0142398_4	PHROG	phrog_2551	minor tail protein	tail
UHGV-0142398_4	UniRef90	UniRef90_A0A318EKR9	ATP-binding sugar transporter Gifsy-2	NA
UHGV-0142398_4	eggNOG-mapper	478749.BRYFOR_07540	ATP-binding sugar transporter from pro-phage	NA
UHGV-0142398_4	Structural annotation	PF13856	NA	NA
UHGV-0142398_5	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0142398_5	UniRef90	UniRef90_UPI00192220AE	phage tail protein	NA
UHGV-0142398_5	eggNOG-mapper	478749.BRYFOR_07541	NA	NA
UHGV-0142398_5	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0142398_5	Structural annotation	PF06763	NA	NA
UHGV-0142398_6	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0142398_6	eggNOG-mapper	411470.RUMGNA_00234	NA	NA
UHGV-0142398_6	Structural annotation	PF08873	NA	NA
UHGV-0142398_7	PHROG	phrog_17039	NA	unknown function
UHGV-0142398_8	KOfam	K06907	NA	NA
UHGV-0142398_8	PHROG	phrog_23	tail sheath	tail
UHGV-0142398_8	UniRef90	UniRef90_D6DIU3	Phage tail sheath protein FI	NA
UHGV-0142398_8	eggNOG-mapper	610130.Closa_0846	COG3497 Phage tail sheath protein FI	NA
UHGV-0142398_8	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0142398_8	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0142398_9	KOfam	K06908	NA	NA
UHGV-0142398_9	PHROG	phrog_55	head closure	connector
UHGV-0142398_9	UniRef90	UniRef90_U2C5P5	Phage tail tube protein FII	NA
UHGV-0142398_9	eggNOG-mapper	610130.Closa_0847	Phage tail tube protein FII	NA
UHGV-0142398_9	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0142398_9	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0142398_9	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0142398_10	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0142398_10	UniRef90	UniRef90_A0A3R6RY94	Phage tail assembly protein	NA
UHGV-0142398_10	eggNOG-mapper	97139.C824_03371	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0142398_10	Structural annotation	PF10109	NA	NA
UHGV-0142398_11	PHROG	phrog_19074	NA	unknown function
UHGV-0142398_11	UniRef90	UniRef90_UPI0019234AB5	phage tail tape measure protein	NA
UHGV-0142398_11	eggNOG-mapper	411462.DORLON_00777	Phage-related minor tail protein	NA
UHGV-0142398_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0142398_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0142398_11	COG	COG5283	Phage-related tail protein	NA
UHGV-0142398_11	Structural annotation	PF10145, PF12026, TIGR01760, COG5280	NA	NA
UHGV-0142398_12	PHROG	phrog_46	tail protein	tail
UHGV-0142398_12	UniRef90	UniRef90_D6DIU8	Phage Tail Protein X	NA
UHGV-0142398_12	eggNOG-mapper	411470.RUMGNA_00241	Phage Tail Protein X	NA
UHGV-0142398_12	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0142398_12	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0142398_12	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0142398_13	KOfam	K06905	NA	NA
UHGV-0142398_13	PHROG	phrog_52	tail protein	tail
UHGV-0142398_13	UniRef90	UniRef90_U2DD48	LysM domain protein	NA
UHGV-0142398_13	eggNOG-mapper	478749.BRYFOR_07549	COG3500 Phage protein D	NA
UHGV-0142398_13	COG	COG3500	NA	NA
UHGV-0142398_13	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0142398_14	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-0142398_14	UniRef90	UniRef90_U2C5Q0	Phage_base_V domain-containing protein	NA
UHGV-0142398_14	eggNOG-mapper	610130.Closa_0852	Baseplate assembly protein	NA
UHGV-0142398_14	Pfam	PF04717	Type VI secretion system/phage-baseplate injector OB domain	Phage_base_V
UHGV-0142398_14	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0142398_14	Structural annotation	PF01176, MF_00216, TIGR01644, COG4540	NA	NA
UHGV-0142398_15	PHROG	phrog_76	tail protein	tail
UHGV-0142398_15	UniRef90	UniRef90_D6DIV0	Phage protein U	NA
UHGV-0142398_15	eggNOG-mapper	610130.Closa_0853	Phage P2 GpU	NA
UHGV-0142398_15	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0142398_15	COG	COG3499	NA	NA
UHGV-0142398_15	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0142398_16	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0142398_16	UniRef90	UniRef90_A0A7X5ICD6	GPW_gp25 domain-containing protein	NA
UHGV-0142398_16	eggNOG-mapper	411464.DESPIG_00754	GPW Gp25 family protein	NA
UHGV-0142398_16	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0142398_17	PHROG	phrog_6	baseplate protein	tail
UHGV-0142398_17	UniRef90	UniRef90_U2DIA1	Baseplate J-like protein	NA
UHGV-0142398_17	eggNOG-mapper	610130.Closa_0855	baseplate J-like protein	NA
UHGV-0142398_17	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0142398_17	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0142398_17	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0142398_18	PHROG	phrog_48	tail protein	tail
UHGV-0142398_18	UniRef90	UniRef90_D6DIV1	Phage tail protein (Tail_P2_I)	NA
UHGV-0142398_18	eggNOG-mapper	97139.C824_03362	Phage tail protein (Tail_P2_I)	NA
UHGV-0142398_18	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0142398_18	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0142398_18	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0142398_19	PHROG	phrog_1780	tail collar fiber protein	tail
UHGV-0142398_19	UniRef90	UniRef90_UPI0008BD6C3E	phage tail protein	NA
UHGV-0142398_19	eggNOG-mapper	610130.Closa_0857	Phage tail-collar fibre protein	NA
UHGV-0142398_20	eggNOG-mapper	1298920.KI911353_gene4837	NA	NA
UHGV-0142398_21	PHROG	phrog_19111	NA	unknown function
UHGV-0142398_21	eggNOG-mapper	742740.HMPREF9474_03519	ATPase involved in DNA repair	NA
UHGV-0142398_21	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0142398_21	Structural annotation	PF16351	NA	NA
UHGV-0142398_23	PHROG	phrog_1009	NA	unknown function
UHGV-0142398_23	UniRef90	UniRef90_A0A3E2WI44	Branched-chain amino acid ABC transporter permease	NA
UHGV-0142398_23	eggNOG-mapper	742740.HMPREF9474_03521	NA	NA
UHGV-0142398_24	PHROG	phrog_1129	holin	lysis
UHGV-0142398_24	UniRef90	UniRef90_A0A2N0KEV2	Enolase	NA
UHGV-0142398_24	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0142398_24	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0142398_24	Structural annotation	PF06946	NA	NA
UHGV-0142398_25	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0142398_25	PHROG	phrog_2649	endolysin	lysis
UHGV-0142398_25	UniRef90	UniRef90_A0A174GZ78	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0142398_25	eggNOG-mapper	742733.HMPREF9469_01368	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0142398_25	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0142398_25	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0142398_25	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA
UHGV-0142398_26	KOfam	K19118	csd2, cas7; CRISPR-associated protein Csd2	NA
UHGV-0142398_26	UniRef90	UniRef90_E7GTP3	Csd2 family CRISPR-associated protein	NA
UHGV-0142398_26	eggNOG-mapper	742740.HMPREF9474_04288	NA	NA
UHGV-0142398_26	PADLOC	cas_Csd2	CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG	CRISPR-CAS
UHGV-0142398_26	Pfam	PF05107	CRISPR-associated protein Cas7	Cas_Cas7
UHGV-0142398_26	NCBIFam	TIGR02589.1	type I-C CRISPR-associated protein Cas7/Csd2	NA
UHGV-0142398_26	COG	COG3649	CRISPR-Cas system type I effector complex subunit Cas7, RAMP superfamily	NA
UHGV-0142398_26	Structural annotation	PF05107, TIGR02589, COG3649	NA	NA
UHGV-0142398_27	PHROG	phrog_25567	NA	unknown function
UHGV-0142398_27	eggNOG-mapper	411469.EUBHAL_00738	NA	NA
UHGV-0142398_27	AcrCatalog	cluster_37554	NA	NA
UHGV-0142398_28	AcrCatalog	cluster_29073	NA	NA
UHGV-0142398_33	eggNOG-mapper	411459.RUMOBE_01396	NA	NA
UHGV-0142398_33	Structural annotation	PF03869, NF008671, COG4710	NA	NA
UHGV-0142398_36	UniRef90	UniRef90_UPI0019233591	helix-turn-helix domain-containing protein	NA
UHGV-0142398_36	eggNOG-mapper	1120998.AUFC01000012_gene488	sequence-specific DNA binding	NA
UHGV-0142398_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0142398_36	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-0142398_37	KOfam	K01759	GLO1, gloA; lactoylglutathione lyase [EC:4.4.1.5]	NA
UHGV-0142398_37	UniRef90	UniRef90_A0A174MIR2	Bleomycin resistance protein	NA
UHGV-0142398_37	eggNOG-mapper	742740.HMPREF9474_01535	cog cog0346	NA
UHGV-0142398_37	Pfam	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	Glyoxalase
UHGV-0142398_37	COG	COG0346	Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family	NA
UHGV-0142398_39	eggNOG-mapper	742740.HMPREF9474_01533	NA	NA
UHGV-0142398_40	UniRef90	UniRef90_A0A1I0JSS0	Zinc-ribbon domain-containing protein	NA
UHGV-0142398_40	eggNOG-mapper	1235793.C809_04674	NA	NA
UHGV-0142398_41	UniRef90	UniRef90_A0A2N0K4C7	Ribosomal_L12 domain-containing protein	NA
UHGV-0142398_41	eggNOG-mapper	742740.HMPREF9474_01531	zinc-ribbon domain	NA
UHGV-0142398_42	PHROG	phrog_4211	tail length tape measure protein	tail
UHGV-0142398_42	UniRef90	UniRef90_E7GKT5	PhageMin_Tail domain-containing protein	NA
UHGV-0142398_42	eggNOG-mapper	742740.HMPREF9474_01530	Phage-related minor tail protein	NA
UHGV-0142398_42	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0142398_42	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0142398_42	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0142398_42	Structural annotation	TIGR01760	NA	NA
UHGV-0142398_43	PHROG	phrog_2598	NA	unknown function
UHGV-0142398_43	UniRef90	UniRef90_E7GKT4	NA	NA
UHGV-0142398_43	eggNOG-mapper	742740.HMPREF9474_01529	NA	NA
UHGV-0142398_43	Pfam	PF03235	NA	DUF262
UHGV-0142398_43	COG	COG1479	NA	NA
UHGV-0142398_43	Structural annotation	MF_02064, TIGR02859, NF041060, COG1479	NA	NA
UHGV-0142398_45	PHROG	phrog_6721	NA	unknown function
UHGV-0142398_45	eggNOG-mapper	665950.HMPREF1025_01974	NA	NA
UHGV-0142398_46	PHROG	phrog_12015	NA	unknown function
UHGV-0142398_46	eggNOG-mapper	742740.HMPREF9474_01527	nuclear chromosome segregation	NA
UHGV-0142398_46	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0142398_46	COG	COG1196	Chromosome segregation ATPase Smc	NA