UHGV-0142409

Genome information

vOTU vOTU-019031

Genome length 37,334 bps

CDS count 63

Completeness 84.53% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142409
vOTU ID	vOTU-019031
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_440503
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.6
Jumbo phage	No

Genome content
Genome length	37,334 bps
GC content	52.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	92.96%
Average CDS length	554.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142409_1	Structural annotation	PF09943	NA	NA
UHGV-0142409_3	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0142409_3	UniRef90	UniRef90_UPI00058FD242	AAA family ATPase	NA
UHGV-0142409_3	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-0142409_3	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0142409_4	PHROG	phrog_18107	NA	unknown function
UHGV-0142409_4	UniRef90	UniRef90_R6I207	PF05037 family protein	NA
UHGV-0142409_4	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0142409_4	Structural annotation	PF05037	NA	NA
UHGV-0142409_5	PHROG	phrog_15768	NA	unknown function
UHGV-0142409_5	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0142409_5	Pfam	PF19808	NA	DUF6291
UHGV-0142409_5	Structural annotation	PF19808	NA	NA
UHGV-0142409_6	PHROG	phrog_9804	NA	unknown function
UHGV-0142409_6	UniRef90	UniRef90_UPI0018976F94	replicative helicase loader/inhibitor	NA
UHGV-0142409_6	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0142409_6	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0142409_6	Structural annotation	PF11417	NA	NA
UHGV-0142409_7	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0142409_7	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0142409_7	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0142409_7	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0142409_7	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0142409_8	Structural annotation	PF12759	NA	NA
UHGV-0142409_9	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0142409_9	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0142409_9	UniRef90	UniRef90_A0A174E7S0	Methyltransferase	NA
UHGV-0142409_9	eggNOG-mapper	479437.Elen_2608	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0142409_9	PADLOC	MTase_II_00107	Type II methyltransferase	RM
UHGV-0142409_9	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0142409_9	COG	COG0863	DNA modification methylase	NA
UHGV-0142409_9	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0142409_10	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-0142409_12	Structural annotation	NF011227	NA	NA
UHGV-0142409_13	Structural annotation	NF000937	NA	NA
UHGV-0142409_14	PHROG	phrog_38832	NA	unknown function
UHGV-0142409_14	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0142409_19	PHROG	phrog_8684	NA	unknown function
UHGV-0142409_19	UniRef90	UniRef90_UPI001D00D0A2	YopX family protein	NA
UHGV-0142409_19	eggNOG-mapper	1095737.HMPREF1110_1215	YopX protein	NA
UHGV-0142409_19	Pfam	PF09643	YopX protein	YopX
UHGV-0142409_19	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0142409_20	PHROG	phrog_924	NA	unknown function
UHGV-0142409_20	UniRef90	UniRef90_UPI0019214AF7	NA	NA
UHGV-0142409_20	eggNOG-mapper	155864.EDL933_3275	NA	NA
UHGV-0142409_20	Pfam	PF04448	NA	DUF551
UHGV-0142409_20	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0142409_20	Structural annotation	NF041588	NA	NA
UHGV-0142409_21	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0142409_21	PHROG	phrog_4836	CII-like regulator	transcription regulation
UHGV-0142409_21	UniRef90	UniRef90_U2R0P8	DNA-binding helix-turn-helix protein	NA
UHGV-0142409_21	eggNOG-mapper	1226322.HMPREF1545_02890	Helix-turn-helix XRE-family like proteins	NA
UHGV-0142409_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0142409_21	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0142409_23	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0142409_23	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0142409_23	UniRef90	UniRef90_A0A7I8D1Y4	Putative P1-type antirepressor - phage associated	NA
UHGV-0142409_23	eggNOG-mapper	1232443.BAIA02000079_gene53	AntA/AntB antirepressor	NA
UHGV-0142409_23	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0142409_23	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0142409_23	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0142409_23	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0142409_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0142409_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0142409_24	UniRef90	UniRef90_UPI001D05F697	terminase small subunit	NA
UHGV-0142409_24	eggNOG-mapper	1316932.MHH_c17910	Terminase small subunit	NA
UHGV-0142409_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0142409_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0142409_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0142409_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0142409_25	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0142409_25	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0142409_25	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0142409_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0142409_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0142409_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0142409_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0142409_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0142409_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0142409_27	UniRef90	UniRef90_UPI001D078D46	phage portal protein	NA
UHGV-0142409_27	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0142409_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0142409_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0142409_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0142409_28	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0142409_28	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0142409_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0142409_28	COG	COG2369	NA	NA
UHGV-0142409_28	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0142409_30	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0142409_30	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0142409_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0142409_31	UniRef90	UniRef90_U2SBS0	Phage capsid family protein	NA
UHGV-0142409_31	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0142409_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0142409_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0142409_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0142409_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0142409_32	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-0142409_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0142409_33	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0142409_34	PHROG	phrog_3366	NA	unknown function
UHGV-0142409_34	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0142409_34	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0142409_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0142409_35	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0142409_35	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0142409_35	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0142409_35	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0142409_36	PHROG	phrog_3266	tail completion	connector
UHGV-0142409_36	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0142409_36	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0142409_36	Structural annotation	PF12691	NA	NA
UHGV-0142409_37	PHROG	phrog_3099	NA	unknown function
UHGV-0142409_37	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0142409_37	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0142409_38	PHROG	phrog_11299	NA	unknown function
UHGV-0142409_38	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0142409_38	Structural annotation	PF10666	NA	NA
UHGV-0142409_39	PHROG	phrog_706	NA	unknown function
UHGV-0142409_39	UniRef90	UniRef90_UPI001D069FB9	Gp15 family bacteriophage protein	NA
UHGV-0142409_39	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0142409_39	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0142409_39	Structural annotation	PF06854	NA	NA
UHGV-0142409_40	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0142409_40	UniRef90	UniRef90_UPI001D05CE4F	OB-fold putative lipoprotein	NA
UHGV-0142409_40	eggNOG-mapper	1203606.HMPREF1526_01637	tRNA_anti-like	NA
UHGV-0142409_40	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0142409_41	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0142409_41	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0142409_41	COG	COG1511	NA	NA
UHGV-0142409_41	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0142409_42	PHROG	phrog_1194	NA	unknown function
UHGV-0142409_42	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0142409_42	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0142409_43	PHROG	phrog_32744	NA	unknown function
UHGV-0142409_43	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0142409_43	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0142409_45	UniRef90	UniRef90_UPI001C1090AB	collagen-like protein	NA
UHGV-0142409_45	eggNOG-mapper	1297617.JPJD01000099_gene2171	Collagen triple helix repeat protein	NA
UHGV-0142409_45	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0142409_45	Structural annotation	PF10651, COG5456	NA	NA
UHGV-0142409_47	PHROG	phrog_10898	NA	unknown function
UHGV-0142409_47	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0142409_47	eggNOG-mapper	935837.JAEK01000059_gene4869	O-Glycosyl hydrolase family 30	NA
UHGV-0142409_47	COG	COG3401	Fibronectin type 3 domain	NA
UHGV-0142409_47	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0142409_48	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0142409_49	PHROG	phrog_863	tail fiber assembly	tail
UHGV-0142409_50	PHROG	phrog_27545	NA	unknown function
UHGV-0142409_50	UniRef90	UniRef90_C6LG78	Carbohydrate binding domain protein	NA
UHGV-0142409_50	eggNOG-mapper	742738.HMPREF9460_00363	NA	NA
UHGV-0142409_52	PHROG	phrog_22773	NA	unknown function
UHGV-0142409_52	UniRef90	UniRef90_UPI001958116B	toxin-antitoxin system toxin subunit	NA
UHGV-0142409_52	eggNOG-mapper	742738.HMPREF9460_03965	NA	NA
UHGV-0142409_53	PHROG	phrog_2310	NA	unknown function
UHGV-0142409_54	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0142409_54	PHROG	phrog_18955	NA	unknown function
UHGV-0142409_54	UniRef90	UniRef90_A0A1C7FQI4	MurNAc-LAA domain-containing protein	NA
UHGV-0142409_54	eggNOG-mapper	1121344.JHZO01000003_gene744	Ami_3	NA
UHGV-0142409_54	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0142409_54	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0142409_54	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0142409_54	Structural annotation	PF01520, PF09992, MF_00417, TIGR02883, COG0860, COG4632	NA	NA
UHGV-0142409_55	PHROG	phrog_1129	holin	lysis
UHGV-0142409_55	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-0142409_55	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0142409_55	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0142409_55	Structural annotation	PF06946	NA	NA
UHGV-0142409_56	PHROG	phrog_4105	NA	unknown function
UHGV-0142409_56	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0142409_57	UniRef90	UniRef90_A0A1C6JAI6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0142409_57	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0142409_60	PHROG	phrog_3754	NA	unknown function
UHGV-0142409_60	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0142409_61	PHROG	phrog_21718	NA	unknown function
UHGV-0142409_61	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0142409_62	PHROG	phrog_22984	NA	unknown function
UHGV-0142409_63	PHROG	phrog_16490	NA	unknown function
UHGV-0142409_63	eggNOG-mapper	1226322.HMPREF1545_00076	NA	NA