UHGV-0142415

Genome information

Genome length 36,193 bps

CDS count 56

Completeness 98.01% (high-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142415
vOTU ID	vOTU-014464
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_440473
BioSample	SAMN05971554
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.01% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.08
Jumbo phage	No

Genome content
Genome length	36,193 bps
GC content	40.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.20%
Average CDS length	598.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142415_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0142415_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0142415_1	UniRef90	UniRef90_A0A414S2T5	Recombinase family protein	NA
UHGV-0142415_1	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0142415_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0142415_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0142415_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0142415_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0142415_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0142415_2	eggNOG-mapper	1235835.C814_03388	NA	NA
UHGV-0142415_3	PHROG	phrog_87	metallo-protease	other
UHGV-0142415_3	UniRef90	UniRef90_A0A845KIX0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0142415_3	eggNOG-mapper	1235792.C808_05259	Zn peptidase	NA
UHGV-0142415_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0142415_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0142415_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0142415_4	UniRef90	UniRef90_UPI00156F9E81	XRE family transcriptional regulator	NA
UHGV-0142415_4	eggNOG-mapper	1235798.C817_00736	addiction module antidote protein HigA	NA
UHGV-0142415_4	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0142415_4	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0142415_5	UniRef90	UniRef90_UPI0011115B61	helix-turn-helix domain-containing protein	NA
UHGV-0142415_5	eggNOG-mapper	1280692.AUJL01000011_gene3217	NA	NA
UHGV-0142415_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0142415_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0142415_6	PHROG	phrog_17486	NA	unknown function
UHGV-0142415_6	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0142415_10	eggNOG-mapper	411462.DORLON_00814	NA	NA
UHGV-0142415_11	PHROG	phrog_3777	NA	unknown function
UHGV-0142415_11	UniRef90	UniRef90_UPI00156DC22E	NA	NA
UHGV-0142415_11	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0142415_11	Pfam	PF12957	NA	DUF3846
UHGV-0142415_11	Structural annotation	PF12957	NA	NA
UHGV-0142415_14	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0142415_14	UniRef90	UniRef90_A0A1Q6PRD9	Recombinase	NA
UHGV-0142415_14	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-0142415_14	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0142415_14	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0142415_14	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0142415_14	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0142415_15	PHROG	phrog_674	NA	unknown function
UHGV-0142415_15	UniRef90	UniRef90_A0A845KID5	NA	NA
UHGV-0142415_15	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0142415_15	Pfam	PF07083	NA	DUF1351
UHGV-0142415_15	Structural annotation	PF07083	NA	NA
UHGV-0142415_16	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0142415_16	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0142415_16	UniRef90	UniRef90_UPI00164A2200	recombinase RecT	NA
UHGV-0142415_16	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0142415_16	Pfam	PF03837	RecT family	RecT
UHGV-0142415_16	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0142415_16	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0142415_16	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0142415_17	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0142415_17	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-0142415_18	PHROG	phrog_1029	NA	unknown function
UHGV-0142415_18	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-0142415_18	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0142415_19	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0142415_19	UniRef90	UniRef90_A0A174JQ61	Holliday junction resolvase	NA
UHGV-0142415_19	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-0142415_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0142415_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0142415_19	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0142415_20	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0142415_20	UniRef90	UniRef90_A0A174JN05	NA	NA
UHGV-0142415_20	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-0142415_20	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0142415_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0142415_20	Structural annotation	PF14297	NA	NA
UHGV-0142415_21	PHROG	phrog_26445	NA	unknown function
UHGV-0142415_21	UniRef90	UniRef90_A0A412MF67	DNA-binding response regulator	NA
UHGV-0142415_21	eggNOG-mapper	411461.DORFOR_00012	NA	NA
UHGV-0142415_21	Structural annotation	PF13384, MF_00475, TIGR02531, COG1710	NA	NA
UHGV-0142415_22	PHROG	phrog_15198	NA	unknown function
UHGV-0142415_22	UniRef90	UniRef90_UPI001EE0C335	NA	NA
UHGV-0142415_22	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-0142415_22	Pfam	PF04448	NA	DUF551
UHGV-0142415_22	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0142415_23	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0142415_23	UniRef90	UniRef90_UPI0004115370	methyltransferase	NA
UHGV-0142415_23	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0142415_23	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0142415_23	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0142415_23	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0142415_23	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0142415_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0142415_25	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0142415_25	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0142415_25	Structural annotation	PF02996	NA	NA
UHGV-0142415_26	Structural annotation	PF09855, COG3478	NA	NA
UHGV-0142415_27	eggNOG-mapper	491205.JARQ01000004_gene2524	NA	NA
UHGV-0142415_27	Pfam	PF20712	Cyanobacterial TRADD-N associated 2-Transmembrane domain	CyanoTRADDas_TM
UHGV-0142415_28	PHROG	phrog_2412	NA	unknown function
UHGV-0142415_28	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0142415_28	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0142415_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0142415_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0142415_29	UniRef90	UniRef90_A0A173ZBW3	Phage terminase, large subunit, PBSX family	NA
UHGV-0142415_29	eggNOG-mapper	742765.HMPREF9457_02119	Terminase-like family	NA
UHGV-0142415_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0142415_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0142415_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0142415_29	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0142415_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0142415_30	UniRef90	UniRef90_A0A174JNH8	Phage portal protein, putative, A118 family	NA
UHGV-0142415_30	eggNOG-mapper	742765.HMPREF9457_02120	NA	NA
UHGV-0142415_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0142415_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0142415_31	UniRef90	UniRef90_A0A1Q6J9C4	Minor capsid protein	NA
UHGV-0142415_31	eggNOG-mapper	411462.DORLON_00794	NA	NA
UHGV-0142415_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0142415_31	COG	COG2369	NA	NA
UHGV-0142415_31	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0142415_32	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-0142415_32	eggNOG-mapper	663278.Ethha_2491	NA	NA
UHGV-0142415_32	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0142415_34	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0142415_34	UniRef90	UniRef90_A6BES1	AP2 domain protein	NA
UHGV-0142415_34	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0142415_34	Pfam	PF00847	AP2 domain	AP2
UHGV-0142415_35	PHROG	phrog_21033	NA	unknown function
UHGV-0142415_35	UniRef90	UniRef90_UPI001C120AA5	phage minor capsid protein	NA
UHGV-0142415_35	eggNOG-mapper	411462.DORLON_00790	NA	NA
UHGV-0142415_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0142415_35	COG	COG2369	NA	NA
UHGV-0142415_36	PHROG	phrog_3711	NA	unknown function
UHGV-0142415_36	eggNOG-mapper	411462.DORLON_00789	NA	NA
UHGV-0142415_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0142415_37	UniRef90	UniRef90_A0A1C5W5U5	Phage minor structural protein GP20	NA
UHGV-0142415_37	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0142415_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0142415_37	Structural annotation	PF06810	NA	NA
UHGV-0142415_38	PHROG	phrog_422	major head protein	head and packaging
UHGV-0142415_38	eggNOG-mapper	742765.HMPREF9457_02127	NA	NA
UHGV-0142415_38	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0142415_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0142415_39	Structural annotation	PF05135	NA	NA
UHGV-0142415_40	PHROG	phrog_3366	NA	unknown function
UHGV-0142415_40	eggNOG-mapper	411462.DORLON_00784	NA	NA
UHGV-0142415_40	Pfam	PF20536	NA	DUF6751
UHGV-0142415_40	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0142415_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0142415_41	UniRef90	UniRef90_UPI00093128B4	minor capsid protein	NA
UHGV-0142415_41	eggNOG-mapper	411462.DORLON_00783	NA	NA
UHGV-0142415_41	Structural annotation	PF11114	NA	NA
UHGV-0142415_42	PHROG	phrog_3266	tail completion	connector
UHGV-0142415_42	eggNOG-mapper	658655.HMPREF0988_02556	NA	NA
UHGV-0142415_42	Structural annotation	PF12691	NA	NA
UHGV-0142415_43	PHROG	phrog_3099	NA	unknown function
UHGV-0142415_43	eggNOG-mapper	411468.CLOSCI_02404	NA	NA
UHGV-0142415_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0142415_44	PHROG	phrog_4450	NA	unknown function
UHGV-0142415_44	UniRef90	UniRef90_UPI001C0AC01D	AP endonuclease	NA
UHGV-0142415_44	eggNOG-mapper	1235792.C808_05374	NA	NA
UHGV-0142415_44	Pfam	PF20378	NA	DUF6673
UHGV-0142415_44	Structural annotation	PF20378	NA	NA
UHGV-0142415_45	PHROG	phrog_706	NA	unknown function
UHGV-0142415_45	UniRef90	UniRef90_UPI0018AAC0D2	Gp15 family bacteriophage protein	NA
UHGV-0142415_45	eggNOG-mapper	1235792.C808_05375	COG NOG24969 non supervised orthologous group	NA
UHGV-0142415_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0142415_45	Structural annotation	PF06854	NA	NA
UHGV-0142415_46	PHROG	phrog_19074	NA	unknown function
UHGV-0142415_46	UniRef90	UniRef90_A0A414S2X0	Phage tail tape measure protein	NA
UHGV-0142415_46	eggNOG-mapper	1235792.C808_05377	Phage tail tape measure protein, TP901 family	NA
UHGV-0142415_46	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0142415_46	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0142415_46	COG	COG5283	Phage-related tail protein	NA
UHGV-0142415_46	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0142415_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0142415_47	UniRef90	UniRef90_A0A414S2W8	Phage tail protein	NA
UHGV-0142415_47	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0142415_47	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0142415_47	COG	COG4722	Phage-related protein YomH	NA
UHGV-0142415_47	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0142415_48	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0142415_48	UniRef90	UniRef90_R9MV22	Phage minor structural protein	NA
UHGV-0142415_48	eggNOG-mapper	1235798.C817_04594	Prophage endopeptidase tail	NA
UHGV-0142415_48	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0142415_48	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0142415_48	COG	COG4926	Phage-related protein	NA
UHGV-0142415_50	PHROG	phrog_16164	NA	unknown function
UHGV-0142415_50	UniRef90	UniRef90_A0A355TLY9	SGNH_hydro domain-containing protein	NA
UHGV-0142415_50	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0142415_53	PHROG	phrog_1009	NA	unknown function
UHGV-0142415_53	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-0142415_53	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0142415_54	PHROG	phrog_1129	holin	lysis
UHGV-0142415_54	UniRef90	UniRef90_UPI001F15FE24	phage holin family protein	NA
UHGV-0142415_54	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0142415_54	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0142415_54	Structural annotation	PF06946	NA	NA
UHGV-0142415_56	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0142415_56	PHROG	phrog_435	endolysin	lysis
UHGV-0142415_56	UniRef90	UniRef90_A0A174JR12	N-acetylmuramoyl-L-alanine amidase LytC	NA
UHGV-0142415_56	eggNOG-mapper	552396.HMPREF0863_00263	hmm pf01520	NA
UHGV-0142415_56	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0142415_56	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0142415_56	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA