UHGV-0142421

Genome information

Genome length 33,538 bps

CDS count 47

Completeness 97.09% (high-quality)

geNomad score 0.9599

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142421
vOTU ID	vOTU-060784
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_417955
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.09% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9599
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68.82
Jumbo phage	No

Genome content
Genome length	33,538 bps
GC content	28.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	86.90%
Average CDS length	621.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142421_5	KOfam	K06899	ndpA; nucleoid-associated protein	NA
UHGV-0142421_5	PHROG	phrog_1974	NA	unknown function
UHGV-0142421_5	UniRef90	UniRef90_UPI0006C6D39C	nucleoid-associated protein	NA
UHGV-0142421_5	eggNOG-mapper	1499684.CCNP01000023_gene3432	37-kD nucleoid-associated bacterial protein	NA
UHGV-0142421_5	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-0142421_5	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-0142421_5	Structural annotation	PF04245, MF_00730, NF001557, COG3081	NA	NA
UHGV-0142421_8	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0142421_8	UniRef90	UniRef90_UPI00164BA94B	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0142421_8	eggNOG-mapper	469604.HMPREF0946_01101	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0142421_8	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0142421_8	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0142421_13	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0142421_13	UniRef90	UniRef90_A0A1C6DJP9	ORF6C domain	NA
UHGV-0142421_13	eggNOG-mapper	1415774.U728_848	ORF6N domain	NA
UHGV-0142421_13	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0142421_13	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0142421_13	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0142421_13	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0142421_14	UniRef90	UniRef90_A0A0E1L5V5	Putative zinc-binding lipoprotein AdcA	NA
UHGV-0142421_14	eggNOG-mapper	1414720.CBYM010000063_gene3452	NA	NA
UHGV-0142421_15	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0142421_15	UniRef90	UniRef90_A0A6N3GRJ6	Histidine kinase	NA
UHGV-0142421_15	eggNOG-mapper	1415775.U729_2581	NA	NA
UHGV-0142421_15	Structural annotation	PF21531, NF033787, COG3311	NA	NA
UHGV-0142421_16	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0142421_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0142421_16	UniRef90	UniRef90_UPI0018A8C3D6	helix-turn-helix domain-containing protein	NA
UHGV-0142421_16	eggNOG-mapper	86416.Clopa_0552	helix-turn-helix	NA
UHGV-0142421_16	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0142421_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0142421_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0142421_16	Structural annotation	PF01381, NF041677, COG1396	NA	NA
UHGV-0142421_17	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0142421_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0142421_17	UniRef90	UniRef90_UPI001241C25A	helix-turn-helix domain-containing protein	NA
UHGV-0142421_17	eggNOG-mapper	1196322.A370_05752	Helix-turn-helix XRE-family like proteins	NA
UHGV-0142421_17	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0142421_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0142421_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0142421_17	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0142421_18	PHROG	phrog_87	metallo-protease	other
UHGV-0142421_18	UniRef90	UniRef90_A0A1C6HY66	Phage exclusion protein Lit	NA
UHGV-0142421_18	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0142421_18	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0142421_18	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0142421_18	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0142421_19	KOfam	K14059	int; integrase	NA
UHGV-0142421_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0142421_19	UniRef90	UniRef90_A0A6M0UD28	Transposase from transposon Tn916	NA
UHGV-0142421_19	eggNOG-mapper	1415775.U729_2576	Belongs to the 'phage' integrase family	NA
UHGV-0142421_19	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0142421_19	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0142421_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0142421_19	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0142421_19	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0142421_20	UniRef90	UniRef90_UPI001B3C8573	helix-turn-helix domain-containing protein	NA
UHGV-0142421_20	eggNOG-mapper	545697.HMPREF0216_03161	Helix-turn-helix domain	NA
UHGV-0142421_20	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0142421_20	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0142421_21	PHROG	phrog_18851	NA	unknown function
UHGV-0142421_23	KOfam	K07728	K07728; putative transcriptional regulator	NA
UHGV-0142421_23	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0142421_23	UniRef90	UniRef90_A0A1C6DP18	HTH-type transcriptional regulator sinR	NA
UHGV-0142421_23	eggNOG-mapper	431943.CKL_1821	IrrE N-terminal-like domain	NA
UHGV-0142421_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0142421_23	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0142421_23	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0142421_23	Structural annotation	PF06114, PF01381, MF_00584, NF038139, COG2856, COG1476	NA	NA
UHGV-0142421_24	eggNOG-mapper	431943.CKL_1820	NA	NA
UHGV-0142421_25	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0142421_25	PHROG	phrog_3088	amidase	lysis
UHGV-0142421_25	UniRef90	UniRef90_A0A1C6KYJ2	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0142421_25	eggNOG-mapper	545697.HMPREF0216_02873	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0142421_25	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0142421_25	Pfam	PF05036	SPOR domain	SPOR
UHGV-0142421_25	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0142421_26	PHROG	phrog_1129	holin	lysis
UHGV-0142421_26	UniRef90	UniRef90_UPI00189EBD01	phage holin family protein	NA
UHGV-0142421_26	eggNOG-mapper	1414720.CBYM010000001_gene714	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0142421_26	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0142421_26	Structural annotation	PF06946	NA	NA
UHGV-0142421_27	UniRef90	UniRef90_UPI000DCFCC11	iduronate sulfatase	NA
UHGV-0142421_27	eggNOG-mapper	457396.CSBG_01061	NA	NA
UHGV-0142421_28	UniRef90	UniRef90_A0A101XXU5	Uracil-DNA glycosylase	NA
UHGV-0142421_28	eggNOG-mapper	86416.Clopa_2739	NA	NA
UHGV-0142421_29	KOfam	K01186	NEU1; sialidase-1 [EC:3.2.1.18]	NA
UHGV-0142421_29	PHROG	phrog_21231	virion structural protein	head and packaging
UHGV-0142421_29	eggNOG-mapper	1499683.CCFF01000005_gene81	NA	NA
UHGV-0142421_29	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0142421_29	Pfam	PF13859	BNR repeat-like domain	BNR_3
UHGV-0142421_29	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0142421_30	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0142421_30	UniRef90	UniRef90_UPI00164A835E	phage tail protein	NA
UHGV-0142421_30	eggNOG-mapper	999411.HMPREF1092_03309	Prophage endopeptidase tail	NA
UHGV-0142421_30	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0142421_30	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0142421_30	COG	COG4926	Phage-related protein	NA
UHGV-0142421_30	Structural annotation	PF06605, TIGR01665, COG4926	NA	NA
UHGV-0142421_31	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0142421_31	UniRef90	UniRef90_UPI00164B1C46	phage tail family protein	NA
UHGV-0142421_31	eggNOG-mapper	195103.CPF_1575	tail component	NA
UHGV-0142421_31	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0142421_31	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0142421_31	COG	COG4722	Phage-related protein YomH	NA
UHGV-0142421_31	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0142421_32	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0142421_32	UniRef90	UniRef90_A0A1C6DMK7	Phage-related minor tail protein	NA
UHGV-0142421_32	eggNOG-mapper	946235.CAER01000065_gene2435	Phage tail tape measure protein	NA
UHGV-0142421_32	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0142421_32	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0142421_32	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0142421_32	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0142421_34	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0142421_34	eggNOG-mapper	1408422.JHYF01000021_gene973	NA	NA
UHGV-0142421_34	Structural annotation	PF06896	NA	NA
UHGV-0142421_35	PHROG	phrog_88	major tail protein	tail
UHGV-0142421_35	UniRef90	UniRef90_A0A1C6DMD2	Phage major tail protein, phi13 family	NA
UHGV-0142421_35	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-0142421_35	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0142421_35	COG	COG5492	NA	NA
UHGV-0142421_35	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0142421_36	PHROG	phrog_78	tail terminator	connector
UHGV-0142421_36	UniRef90	UniRef90_T0D5T1	Putative gp10 protein	NA
UHGV-0142421_36	eggNOG-mapper	195103.CPF_1580	NA	NA
UHGV-0142421_36	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0142421_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0142421_37	UniRef90	UniRef90_UPI00164C40CD	HK97 gp10 family phage protein	NA
UHGV-0142421_37	eggNOG-mapper	195103.CPF_1581	Phage protein, HK97 gp10 family	NA
UHGV-0142421_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0142421_37	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0142421_37	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0142421_38	UniRef90	UniRef90_A0A1C6DM66	Bacteriophage head-tail adaptor	NA
UHGV-0142421_38	eggNOG-mapper	536233.CLO_1426	Phage head-tail adaptor	NA
UHGV-0142421_38	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0142421_38	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0142421_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0142421_39	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0142421_39	UniRef90	UniRef90_UPI00115B5F02	head-tail connector protein	NA
UHGV-0142421_39	eggNOG-mapper	394503.Ccel_2955	Phage gp6-like head-tail connector protein	NA
UHGV-0142421_39	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0142421_39	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0142421_39	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0142421_40	PHROG	phrog_10972	tail fiber protein	tail
UHGV-0142421_40	UniRef90	UniRef90_UPI00164BB495	collagen-like protein	NA
UHGV-0142421_40	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0142421_40	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0142421_41	PHROG	phrog_10	major head protein	head and packaging
UHGV-0142421_41	UniRef90	UniRef90_UPI00164C2447	phage major capsid protein	NA
UHGV-0142421_41	eggNOG-mapper	1262449.CP6013_1042	Phage major capsid protein, HK97 family	NA
UHGV-0142421_41	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0142421_41	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0142421_41	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0142421_41	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0142421_42	KOfam	K06904	NA	NA
UHGV-0142421_42	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0142421_42	UniRef90	UniRef90_UPI00164A1C20	HK97 family phage prohead protease	NA
UHGV-0142421_42	eggNOG-mapper	1187894.I2E8Y9_9CAUD	peptidase activity	NA
UHGV-0142421_42	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0142421_42	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0142421_42	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0142421_43	PHROG	phrog_12	portal protein	head and packaging
UHGV-0142421_43	UniRef90	UniRef90_A0A1C6DLG7	Phage portal protein, HK97 family	NA
UHGV-0142421_43	eggNOG-mapper	632245.CLP_2617	Phage portal protein, HK97 family	NA
UHGV-0142421_43	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0142421_43	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0142421_43	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0142421_43	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0142421_44	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0142421_44	UniRef90	UniRef90_A0A1C6DLM3	Phage terminase-like protein, large subunit	NA
UHGV-0142421_44	eggNOG-mapper	1262449.CP6013_1038	Terminase	NA
UHGV-0142421_44	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0142421_44	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0142421_44	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0142421_44	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0142421_45	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0142421_45	UniRef90	UniRef90_A0A1C6DLV1	Phage terminase, small subunit	NA
UHGV-0142421_45	eggNOG-mapper	755731.Clo1100_1159	phage terminase small subunit	NA
UHGV-0142421_45	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0142421_45	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0142421_45	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0142421_45	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0142421_46	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0142421_46	UniRef90	UniRef90_E3GPG7	Gp50 protein	NA
UHGV-0142421_46	eggNOG-mapper	536233.CLO_1419	HNH endonuclease	NA
UHGV-0142421_46	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0142421_47	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0142421_47	UniRef90	UniRef90_UPI00164A56CF	Xaa-His dipeptidase	NA
UHGV-0142421_47	eggNOG-mapper	1414720.CBYM010000001_gene693	NA	NA