UHGV-0142450

Genome information

Genome length 38,398 bps

CDS count 77

Completeness 65.05% (medium-quality)

geNomad score 0.9725

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142450
vOTU ID	vOTU-017282
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_418689
BioSample	SAMN05826895
Country	Finland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.05% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9725
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.79
Jumbo phage	No

Genome content
Genome length	38,398 bps
GC content	37.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	88.23%
Average CDS length	443.69 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142450_2	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0142450_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0142450_2	UniRef90	UniRef90_A0A0P0M3H8	Integrase	NA
UHGV-0142450_2	eggNOG-mapper	357276.EL88_22680	Arm DNA-binding domain	NA
UHGV-0142450_2	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0142450_2	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0142450_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0142450_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0142450_2	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0142450_3	PHROG	phrog_38864	NA	unknown function
UHGV-0142450_3	Structural annotation	PF13185, MF_04104, NF041673, COG2203	NA	NA
UHGV-0142450_4	KOfam	K22918	ttsA; typhoid toxin secretion A	NA
UHGV-0142450_4	PHROG	phrog_315	endolysin	lysis
UHGV-0142450_4	UniRef90	UniRef90_I9RI37	PG_binding_3 domain-containing protein	NA
UHGV-0142450_4	eggNOG-mapper	357276.EL88_11190	Glycosyl hydrolase 108	NA
UHGV-0142450_4	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-0142450_4	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0142450_4	COG	COG3926	Lysozyme family protein	NA
UHGV-0142450_5	eggNOG-mapper	357276.EL88_22660	NA	NA
UHGV-0142450_6	UniRef90	UniRef90_A0A413MWK4	Transposase	NA
UHGV-0142450_6	eggNOG-mapper	435590.BVU_2809	NA	NA
UHGV-0142450_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0142450_7	UniRef90	UniRef90_I8ZEZ8	Core-binding (CB) domain-containing protein	NA
UHGV-0142450_7	eggNOG-mapper	585543.HMPREF0969_00813	Belongs to the 'phage' integrase family	NA
UHGV-0142450_7	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0142450_7	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0142450_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0142450_7	Structural annotation	PF13102, PF17293, MF_01808, NF007246, COG4973	NA	NA
UHGV-0142450_9	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0142450_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0142450_9	UniRef90	UniRef90_I8VUT4	Tyr recombinase domain-containing protein	NA
UHGV-0142450_9	eggNOG-mapper	1122971.BAME01000048_gene4078	Belongs to the 'phage' integrase family	NA
UHGV-0142450_9	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0142450_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0142450_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0142450_9	Structural annotation	PF00589, PF13102, PF17293, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0142450_11	PHROG	phrog_9710	NA	unknown function
UHGV-0142450_11	UniRef90	UniRef90_A0A7K0JAM6	XRE family transcriptional regulator	NA
UHGV-0142450_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0142450_13	eggNOG-mapper	411476.BACOVA_03870	NA	NA
UHGV-0142450_13	Structural annotation	PF09202, TIGR01610, COG1321	NA	NA
UHGV-0142450_14	UniRef90	UniRef90_A0A7K0JB02	DeoR family transcriptional regulator	NA
UHGV-0142450_14	Structural annotation	PF08587	NA	NA
UHGV-0142450_15	UniRef90	UniRef90_UPI001627116C	NA	NA
UHGV-0142450_15	eggNOG-mapper	1121288.AULL01000012_gene483	NA	NA
UHGV-0142450_15	Pfam	PF12964	NA	DUF3853
UHGV-0142450_15	Structural annotation	PF12964, NF040990, COG3311	NA	NA
UHGV-0142450_22	eggNOG-mapper	1121101.HMPREF1532_02570	NA	NA
UHGV-0142450_25	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0142450_25	UniRef90	UniRef90_A0A7J5MLF0	ERF family protein	NA
UHGV-0142450_25	eggNOG-mapper	485918.Cpin_3859	single-stranded DNA binding	NA
UHGV-0142450_25	Pfam	PF04404	ERF superfamily	ERF
UHGV-0142450_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0142450_25	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0142450_26	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0142450_26	UniRef90	UniRef90_A6L492	PDDEXK_1 domain-containing protein	NA
UHGV-0142450_26	eggNOG-mapper	762982.HMPREF9442_00550	NA	NA
UHGV-0142450_26	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0142450_27	UniRef90	UniRef90_F3QQV6	Conserved domain protein	NA
UHGV-0142450_27	eggNOG-mapper	1121100.JCM6294_521	NA	NA
UHGV-0142450_28	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0142450_28	eggNOG-mapper	762968.HMPREF9441_02240	NA	NA
UHGV-0142450_28	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0142450_31	PHROG	phrog_19572	NA	unknown function
UHGV-0142450_31	UniRef90	UniRef90_A0A4S2FPB6	NA	NA
UHGV-0142450_31	eggNOG-mapper	484018.BACPLE_01425	COG NOG14445 non supervised orthologous group	NA
UHGV-0142450_31	Pfam	PF14902	NA	DUF4494
UHGV-0142450_31	Structural annotation	PF14902	NA	NA
UHGV-0142450_33	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0142450_33	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0142450_33	UniRef90	UniRef90_UPI00125CCC78	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0142450_33	eggNOG-mapper	435590.BVU_2854	Endodeoxyribonuclease RusA	NA
UHGV-0142450_33	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0142450_33	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0142450_35	PHROG	phrog_16304	NA	unknown function
UHGV-0142450_35	UniRef90	UniRef90_UPI00125CB8AB	NA	NA
UHGV-0142450_35	eggNOG-mapper	694427.Palpr_2953	NA	NA
UHGV-0142450_35	Pfam	PF19808	NA	DUF6291
UHGV-0142450_36	PHROG	phrog_29547	NA	unknown function
UHGV-0142450_36	UniRef90	UniRef90_F3PDU6	Conserved domain protein	NA
UHGV-0142450_36	eggNOG-mapper	762984.HMPREF9445_00154	NA	NA
UHGV-0142450_36	Pfam	PF20338	NA	DUF6633
UHGV-0142450_38	UniRef90	UniRef90_UPI001E296F76	host-nuclease inhibitor Gam family protein	NA
UHGV-0142450_38	eggNOG-mapper	357276.EL88_11460	NA	NA
UHGV-0142450_40	PHROG	phrog_4433	NA	unknown function
UHGV-0142450_40	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-0142450_40	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0142450_40	Structural annotation	NF007410	NA	NA
UHGV-0142450_41	UniRef90	UniRef90_H2A0H1	Putative nuclease	NA
UHGV-0142450_41	Structural annotation	TIGR01453	NA	NA
UHGV-0142450_42	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0142450_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0142450_42	UniRef90	UniRef90_A0A854M0D4	Integrase	NA
UHGV-0142450_42	eggNOG-mapper	585543.HMPREF0969_03618	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0142450_42	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0142450_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0142450_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0142450_42	Structural annotation	PF00589, PF02899, MF_02055, NF040815, COG4973	NA	NA
UHGV-0142450_43	PHROG	phrog_9133	NA	unknown function
UHGV-0142450_43	UniRef90	UniRef90_A0A7J5HWZ6	SAM-dependent DNA methyltransferase	NA
UHGV-0142450_43	eggNOG-mapper	357276.EL88_22910	DNA restriction-modification system	NA
UHGV-0142450_43	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0142450_43	Structural annotation	PF02384, MF_02217, TIGR02469, COG2263	NA	NA
UHGV-0142450_47	UniRef90	UniRef90_A0A6M4K8B0	NA	NA
UHGV-0142450_47	eggNOG-mapper	1347393.HG726022_gene3718	NA	NA
UHGV-0142450_47	Pfam	PF04448	NA	DUF551
UHGV-0142450_53	eggNOG-mapper	411901.BACCAC_01173	NA	NA
UHGV-0142450_56	PHROG	phrog_7314	NA	unknown function
UHGV-0142450_57	PHROG	phrog_13561	NA	unknown function
UHGV-0142450_57	Structural annotation	PF21441, COG5045	NA	NA
UHGV-0142450_59	PHROG	phrog_28300	NA	unknown function
UHGV-0142450_59	eggNOG-mapper	483215.BACFIN_06266	NA	NA
UHGV-0142450_60	Structural annotation	PF17574, TIGR04550	NA	NA
UHGV-0142450_61	PHROG	phrog_12005	NA	unknown function
UHGV-0142450_62	PHROG	phrog_9236	pyrophosphatase	other
UHGV-0142450_62	eggNOG-mapper	1122971.BAME01000163_gene6622	NA	NA
UHGV-0142450_62	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0142450_63	eggNOG-mapper	357276.EL88_11425	NA	NA
UHGV-0142450_64	Structural annotation	PF08928	NA	NA
UHGV-0142450_65	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0142450_65	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0142450_65	UniRef90	UniRef90_A0A7J5MNL6	Terminase small subunit	NA
UHGV-0142450_65	eggNOG-mapper	1122971.BAME01000163_gene6624	Terminase small subunit	NA
UHGV-0142450_65	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0142450_65	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0142450_65	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0142450_66	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0142450_66	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0142450_66	UniRef90	UniRef90_I9F8X4	PBSX family phage terminase, large subunit	NA
UHGV-0142450_66	eggNOG-mapper	1122971.BAME01000163_gene6625	Phage terminase large subunit	NA
UHGV-0142450_66	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0142450_66	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0142450_66	COG	COG1783	Phage terminase large subunit	NA
UHGV-0142450_66	Structural annotation	PF04466, PF17289, MF_04145, MF_00034, TIGR01547, TIGR01630, COG1783, COG5362	NA	NA
UHGV-0142450_67	PHROG	phrog_12	portal protein	head and packaging
UHGV-0142450_67	UniRef90	UniRef90_A0A069S1U3	Phage portal family protein	NA
UHGV-0142450_67	eggNOG-mapper	449673.BACSTE_00582	Phage portal protein	NA
UHGV-0142450_67	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0142450_67	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0142450_68	KOfam	K06904	NA	NA
UHGV-0142450_68	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0142450_68	UniRef90	UniRef90_I8VW13	HK97 family phage prohead protease	NA
UHGV-0142450_68	eggNOG-mapper	449673.BACSTE_00581	Caudovirus prohead serine protease	NA
UHGV-0142450_68	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0142450_68	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0142450_68	COG	COG3740	Phage head maturation protease	NA
UHGV-0142450_68	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0142450_69	PHROG	phrog_10	major head protein	head and packaging
UHGV-0142450_69	UniRef90	UniRef90_A0A015ZJH7	Phage major capsid protein, HK97 family	NA
UHGV-0142450_69	eggNOG-mapper	449673.BACSTE_00580	Phage capsid family	NA
UHGV-0142450_69	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0142450_69	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0142450_69	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0142450_69	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0142450_71	PHROG	phrog_26639	NA	unknown function
UHGV-0142450_71	eggNOG-mapper	1122971.BAME01000143_gene6480	NA	NA
UHGV-0142450_71	Structural annotation	PF20459	NA	NA
UHGV-0142450_72	PHROG	phrog_23418	NA	unknown function
UHGV-0142450_72	eggNOG-mapper	1122971.BAME01000143_gene6481	NA	NA
UHGV-0142450_72	Structural annotation	PF08873	NA	NA
UHGV-0142450_73	PHROG	phrog_24272	NA	unknown function
UHGV-0142450_73	eggNOG-mapper	1122971.BAME01000143_gene6482	NA	NA
UHGV-0142450_73	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0142450_75	PHROG	phrog_6195	tail protein	tail
UHGV-0142450_75	UniRef90	UniRef90_I8VT13	ABC transporter C family member 12	NA
UHGV-0142450_75	eggNOG-mapper	1122971.BAME01000143_gene6484	NA	NA
UHGV-0142450_77	UniRef90	UniRef90_A0A413MWK4	Transposase	NA
UHGV-0142450_77	eggNOG-mapper	357276.EL88_22655	NA	NA