UHGV-0142543

Genome information

Genome length 28,235 bps

CDS count 41

Completeness 81.39% (medium-quality)

geNomad score 0.9564

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142543
vOTU ID	vOTU-032856
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_396386
BioSample	SAMN04161025
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9564
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.89
Jumbo phage	No

Genome content
Genome length	28,235 bps
GC content	29.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	89.41%
Average CDS length	618.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142543_1	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0142543_1	UniRef90	UniRef90_A0A316MDV8	Phage tail protein	NA
UHGV-0142543_1	eggNOG-mapper	457396.CSBG_01058	phage tail	NA
UHGV-0142543_1	COG	COG4722	Phage-related protein YomH	NA
UHGV-0142543_1	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0142543_2	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0142543_2	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0142543_2	UniRef90	UniRef90_A0A2X3BY73	Phage tail tape measure protein, TP901 family	NA
UHGV-0142543_2	eggNOG-mapper	696281.Desru_3541	Phage tail tape measure protein, TP901 family	NA
UHGV-0142543_2	COG	COG5283	Phage-related tail protein	NA
UHGV-0142543_2	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0142543_3	eggNOG-mapper	632245.CLP_2688	NA	NA
UHGV-0142543_3	Structural annotation	PF11836	NA	NA
UHGV-0142543_4	PHROG	phrog_88	major tail protein	tail
UHGV-0142543_4	UniRef90	UniRef90_UPI001F22BC6F	phage tail protein	NA
UHGV-0142543_4	eggNOG-mapper	632245.CLP_2689	phage major tail protein, phi13 family	NA
UHGV-0142543_4	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0142543_5	eggNOG-mapper	536233.CLO_1367	NA	NA
UHGV-0142543_5	Structural annotation	PF05657	NA	NA
UHGV-0142543_6	eggNOG-mapper	536233.CLO_1366	NA	NA
UHGV-0142543_6	Structural annotation	TIGR01725	NA	NA
UHGV-0142543_7	PHROG	phrog_25	head closure Hc1	connector
UHGV-0142543_7	UniRef90	UniRef90_A0A316MAX0	Head-tail adaptor protein	NA
UHGV-0142543_7	eggNOG-mapper	632245.CLP_2692	Phage head-tail joining protein	NA
UHGV-0142543_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0142543_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0142543_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0142543_8	UniRef90	UniRef90_A0A316ME80	Phage gp6-like head-tail connector protein	NA
UHGV-0142543_8	eggNOG-mapper	632245.CLP_2693	Phage gp6-like head-tail connector protein	NA
UHGV-0142543_8	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0142543_8	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0142543_9	PHROG	phrog_6865	NA	unknown function
UHGV-0142543_9	eggNOG-mapper	1399942.U3PBG9_9CAUD	NA	NA
UHGV-0142543_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-0142543_10	UniRef90	UniRef90_A0A316MAR5	Phage major capsid protein	NA
UHGV-0142543_10	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-0142543_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0142543_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0142543_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0142543_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0142543_11	KOfam	K06904	NA	NA
UHGV-0142543_11	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0142543_11	UniRef90	UniRef90_A0A316MAC0	HK97 family phage prohead protease	NA
UHGV-0142543_11	eggNOG-mapper	1414720.CBYM010000002_gene573	Phage prohead protease, HK97 family	NA
UHGV-0142543_11	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0142543_11	COG	COG3740	Phage head maturation protease	NA
UHGV-0142543_11	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0142543_12	PHROG	phrog_12	portal protein	head and packaging
UHGV-0142543_12	UniRef90	UniRef90_A0A316MCA0	Phage portal protein	NA
UHGV-0142543_12	eggNOG-mapper	1414720.CBYM010000002_gene574	Portal protein	NA
UHGV-0142543_12	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0142543_12	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0142543_12	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0142543_12	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0142543_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0142543_13	UniRef90	UniRef90_A0A316MDW9	Terminase	NA
UHGV-0142543_13	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-0142543_13	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0142543_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0142543_13	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0142543_14	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0142543_14	UniRef90	UniRef90_A0A316MSN9	Phage terminase small subunit P27 family	NA
UHGV-0142543_14	eggNOG-mapper	632245.CLP_2921	phage terminase small subunit	NA
UHGV-0142543_14	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0142543_14	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0142543_14	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0142543_15	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0142543_15	UniRef90	UniRef90_UPI001D087DB8	serine/threonine protein kinase	NA
UHGV-0142543_15	eggNOG-mapper	632245.CLP_2699	NA	NA
UHGV-0142543_16	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0142543_16	UniRef90	UniRef90_A0A316MAA8	Xaa-His dipeptidase	NA
UHGV-0142543_16	eggNOG-mapper	632245.CLP_2923	NA	NA
UHGV-0142543_16	Structural annotation	PF07141	NA	NA
UHGV-0142543_17	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0142543_17	PHROG	phrog_216	integrase	integration and excision
UHGV-0142543_17	UniRef90	UniRef90_A0A316MEF5	Integrase	NA
UHGV-0142543_17	eggNOG-mapper	1294142.CINTURNW_1679	Phage integrase family	NA
UHGV-0142543_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0142543_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0142543_17	Structural annotation	PF00589, MF_01807, NF040815, COG4974	NA	NA
UHGV-0142543_18	PHROG	phrog_15827	NA	unknown function
UHGV-0142543_18	UniRef90	UniRef90_A0A0C3M8L1	Zn-finger containing protein	NA
UHGV-0142543_18	eggNOG-mapper	1280692.AUJL01000027_gene2169	DNA-directed 5'-3' RNA polymerase activity	NA
UHGV-0142543_18	COG	COG1996	DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger	NA
UHGV-0142543_18	Structural annotation	PF09723, TIGR02605, COG1996	NA	NA
UHGV-0142543_19	UniRef90	UniRef90_A0A316MAX7	RNA polymerase subunit sigma	NA
UHGV-0142543_19	eggNOG-mapper	290402.Cbei_0899	NA	NA
UHGV-0142543_19	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0142543_19	Structural annotation	PF04545, MF_00683, NF008895	NA	NA
UHGV-0142543_20	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0142543_20	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0142543_20	UniRef90	UniRef90_A0A316ME91	Replicative DNA helicase	NA
UHGV-0142543_20	eggNOG-mapper	536233.CLO_1409	Participates in initiation and elongation during chromosome replication	NA
UHGV-0142543_20	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0142543_20	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0142543_20	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0142543_20	COG	COG0305	Replicative DNA helicase	NA
UHGV-0142543_20	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0142543_21	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0142543_21	UniRef90	UniRef90_A0A316MAS4	Helix-turn-helix domain-containing protein	NA
UHGV-0142543_21	eggNOG-mapper	508419.F8J194_9CAUD	Helix-turn-helix domain	NA
UHGV-0142543_21	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0142543_21	Structural annotation	PF13730, NF040939, COG3355	NA	NA
UHGV-0142543_22	eggNOG-mapper	632245.CLP_2670	NA	NA
UHGV-0142543_23	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0142543_23	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0142543_23	UniRef90	UniRef90_A0A316MCA8	Exopolyphosphatase	NA
UHGV-0142543_23	eggNOG-mapper	1280689.AUJC01000011_gene1499	cell division	NA
UHGV-0142543_23	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0142543_23	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-0142543_23	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0142543_24	eggNOG-mapper	573061.Clocel_2949	NA	NA
UHGV-0142543_24	Structural annotation	PF05171, TIGR04108, COG3721	NA	NA
UHGV-0142543_25	PHROG	phrog_421	NA	unknown function
UHGV-0142543_25	UniRef90	UniRef90_A0A316MSP8	NA	NA
UHGV-0142543_25	eggNOG-mapper	999411.HMPREF1092_03263	NA	NA
UHGV-0142543_25	Pfam	PF10979	NA	DUF2786
UHGV-0142543_25	COG	COG1451	UTP pyrophosphatase, metal-dependent hydrolase family	NA
UHGV-0142543_27	PHROG	phrog_6058	NA	unknown function
UHGV-0142543_27	UniRef90	UniRef90_A0A101WT85	Modification methylase SinI	NA
UHGV-0142543_27	eggNOG-mapper	1280689.AUJC01000011_gene1497	NA	NA
UHGV-0142543_27	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0142543_28	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0142543_28	UniRef90	UniRef90_A0A316MAY7	XRE family transcriptional regulator	NA
UHGV-0142543_28	eggNOG-mapper	536233.CLO_1403	Helix-turn-helix XRE-family like proteins	NA
UHGV-0142543_28	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0142543_28	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0142543_28	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0142543_31	eggNOG-mapper	402777.KB235898_gene5150	NA	NA
UHGV-0142543_31	Structural annotation	PF16538	NA	NA
UHGV-0142543_34	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0142543_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0142543_34	UniRef90	UniRef90_A0A316MDY8	XRE family transcriptional regulator	NA
UHGV-0142543_34	eggNOG-mapper	632245.CLP_2950	Helix-turn-helix XRE-family like proteins	NA
UHGV-0142543_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0142543_34	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0142543_34	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0142543_35	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0142543_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0142543_35	UniRef90	UniRef90_A0A316MSQ5	XRE family transcriptional regulator	NA
UHGV-0142543_35	eggNOG-mapper	632245.CLP_2951	Helix-turn-helix XRE-family like proteins	NA
UHGV-0142543_35	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0142543_35	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0142543_35	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0142543_36	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0142543_36	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0142543_36	UniRef90	UniRef90_A0A316MBX0	DNA polymerase III	NA
UHGV-0142543_36	eggNOG-mapper	1443122.Z958_08595	3' exoribonuclease, RNase T-like	NA
UHGV-0142543_36	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0142543_36	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0142543_36	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0142543_36	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0142543_39	PHROG	phrog_7312	NA	unknown function
UHGV-0142543_39	PADLOC	KwaA_00011	NA	Kiwa
UHGV-0142543_39	Structural annotation	NF041622	NA	NA
UHGV-0142543_40	PHROG	phrog_87	metallo-protease	other
UHGV-0142543_40	UniRef90	UniRef90_A0A316MEB1	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0142543_40	eggNOG-mapper	290402.Cbei_0879	NA	NA
UHGV-0142543_40	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0142543_40	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0142543_40	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0142543_41	KOfam	K14059	int; integrase	NA
UHGV-0142543_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0142543_41	UniRef90	UniRef90_A0A316MAU0	Site-specific integrase	NA
UHGV-0142543_41	eggNOG-mapper	1280689.AUJC01000011_gene1488	Phage integrase family	NA
UHGV-0142543_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0142543_41	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0142543_41	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA