UHGV-0142553

Genome information

Genome length 28,108 bps

CDS count 43

Completeness 80.68% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142553
vOTU ID	vOTU-038051
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_404610
BioSample	NA
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.67
Jumbo phage	No

Genome content
Genome length	28,108 bps
GC content	56.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	92.78%
Average CDS length	608.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142553_1	UniRef90	UniRef90_A0A4R1QMH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0142553_1	eggNOG-mapper	445972.ANACOL_00210	NA	NA
UHGV-0142553_1	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0142553_3	PHROG	phrog_4068	NA	unknown function
UHGV-0142553_3	Structural annotation	PF06657	NA	NA
UHGV-0142553_5	PHROG	phrog_199	holin	lysis
UHGV-0142553_5	UniRef90	UniRef90_R5AT18	Toxin secretion/phage lysis holin	NA
UHGV-0142553_5	eggNOG-mapper	742738.HMPREF9460_01388	Bacteriophage holin family	NA
UHGV-0142553_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0142553_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0142553_5	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0142553_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0142553_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0142553_6	PHROG	phrog_5182	endolysin	lysis
UHGV-0142553_6	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0142553_6	eggNOG-mapper	397288.C806_00777	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0142553_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0142553_6	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0142553_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0142553_6	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0142553_7	Structural annotation	PF00629, NF033675	NA	NA
UHGV-0142553_8	eggNOG-mapper	411473.RUMCAL_00420	nuclear chromosome segregation	NA
UHGV-0142553_8	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-0142553_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0142553_9	PHROG	phrog_6616	tail protein	tail
UHGV-0142553_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0142553_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0142553_11	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0142553_11	eggNOG-mapper	1449050.JNLE01000003_gene3881	domain protein	NA
UHGV-0142553_11	COG	COG1511	NA	NA
UHGV-0142553_11	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-0142553_12	PHROG	phrog_706	NA	unknown function
UHGV-0142553_12	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0142553_12	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0142553_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0142553_12	Structural annotation	PF06854	NA	NA
UHGV-0142553_13	PHROG	phrog_11299	NA	unknown function
UHGV-0142553_13	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0142553_13	Structural annotation	PF10666	NA	NA
UHGV-0142553_14	PHROG	phrog_3099	NA	unknown function
UHGV-0142553_14	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0142553_14	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0142553_15	PHROG	phrog_3266	tail completion	connector
UHGV-0142553_15	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0142553_15	Structural annotation	PF12691	NA	NA
UHGV-0142553_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0142553_16	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-0142553_16	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0142553_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0142553_16	Structural annotation	PF11114	NA	NA
UHGV-0142553_17	PHROG	phrog_3366	NA	unknown function
UHGV-0142553_17	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0142553_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0142553_18	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0142553_19	PHROG	phrog_267	major head protein	head and packaging
UHGV-0142553_19	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-0142553_19	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0142553_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0142553_20	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0142553_20	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0142553_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0142553_20	Structural annotation	PF06810	NA	NA
UHGV-0142553_21	UniRef90	UniRef90_UPI000C08D045	NA	NA
UHGV-0142553_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0142553_22	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-0142553_22	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0142553_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0142553_22	Pfam	PF21814	NA	DUF6883
UHGV-0142553_22	COG	COG2369	NA	NA
UHGV-0142553_22	Structural annotation	PF06152, PF21814	NA	NA
UHGV-0142553_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0142553_23	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0142553_23	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0142553_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0142553_24	PHROG	phrog_1233	NA	unknown function
UHGV-0142553_24	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-0142553_24	Structural annotation	PF13058	NA	NA
UHGV-0142553_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0142553_25	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0142553_25	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0142553_25	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0142553_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0142553_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0142553_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0142553_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0142553_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0142553_25	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0142553_26	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0142553_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0142553_27	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0142553_27	Pfam	PF07374	NA	DUF1492
UHGV-0142553_27	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0142553_28	PHROG	phrog_3136	NA	unknown function
UHGV-0142553_28	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-0142553_28	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0142553_28	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0142553_28	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0142553_29	PHROG	phrog_5781	NA	unknown function
UHGV-0142553_29	UniRef90	UniRef90_A0A1C6JA96	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0142553_29	eggNOG-mapper	1048834.TC41_1868	NA	NA
UHGV-0142553_29	Pfam	PF14359	NA	DUF4406
UHGV-0142553_29	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0142553_30	PHROG	phrog_1029	NA	unknown function
UHGV-0142553_30	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-0142553_30	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0142553_31	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0142553_31	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0142553_31	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0142553_32	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0142553_32	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0142553_32	UniRef90	UniRef90_R9MCP5	DNA adenine methylase	NA
UHGV-0142553_32	eggNOG-mapper	1235799.C818_02654	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0142553_32	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0142553_32	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0142553_32	COG	COG0338	DNA-adenine methylase	NA
UHGV-0142553_32	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0142553_33	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-0142553_34	KOfam	K03700	recU; recombination protein U	NA
UHGV-0142553_34	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0142553_34	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-0142553_34	eggNOG-mapper	1203606.HMPREF1526_01884	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0142553_34	Pfam	PF03838	Recombination protein U	RecU
UHGV-0142553_34	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0142553_34	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0142553_35	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0142553_35	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-0142553_35	Structural annotation	PF21578	NA	NA
UHGV-0142553_38	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0142553_38	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0142553_38	UniRef90	UniRef90_UPI0018F33479	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0142553_38	eggNOG-mapper	268407.PWYN_12320	AbrB family transcriptional regulator	NA
UHGV-0142553_38	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0142553_38	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0142553_38	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0142553_38	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0142553_39	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0142553_40	PHROG	phrog_585	NA	unknown function
UHGV-0142553_40	Pfam	PF10711	NA	DUF2513
UHGV-0142553_41	PHROG	phrog_750	NA	unknown function
UHGV-0142553_41	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0142553_43	UniRef90	UniRef90_UPI0013ECC13D	helix-turn-helix domain-containing protein	NA
UHGV-0142553_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0142553_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0142553_43	Structural annotation	PF01381, NF041951, COG1476	NA	NA