UHGV-0142611

Genome information

Genome length 24,256 bps

CDS count 37

Completeness 64.78% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142611
vOTU ID	vOTU-037490
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_412761
BioSample	SAMN05414923
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.91
Jumbo phage	No

Genome content
Genome length	24,256 bps
GC content	65.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	89.96%
Average CDS length	592.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142611_2	PHROG	phrog_9994	NA	unknown function
UHGV-0142611_2	UniRef90	UniRef90_A0A7K3I4P1	H_lectin domain-containing protein	NA
UHGV-0142611_2	eggNOG-mapper	521095.Apar_0592	NA	NA
UHGV-0142611_2	Structural annotation	PF08931, PF20747	NA	NA
UHGV-0142611_4	PHROG	phrog_538	minor tail protein	tail
UHGV-0142611_4	UniRef90	UniRef90_A0A087E4D2	Phage head fiber protein	NA
UHGV-0142611_4	eggNOG-mapper	469378.Ccur_02640	NA	NA
UHGV-0142611_4	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0142611_4	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0142611_5	UniRef90	UniRef90_A0A7Y0EUM5	Tail fiber protein	NA
UHGV-0142611_5	eggNOG-mapper	78345.BMERY_0869	NA	NA
UHGV-0142611_5	Structural annotation	PF16774, TIGR02126, COG4722	NA	NA
UHGV-0142611_6	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0142611_6	UniRef90	UniRef90_A0A174ADB2	Phage-related protein	NA
UHGV-0142611_6	eggNOG-mapper	1111121.HMPREF1247_0787	nuclear chromosome segregation	NA
UHGV-0142611_6	COG	COG5412	Phage-related protein	NA
UHGV-0142611_9	PHROG	phrog_885	major tail protein	tail
UHGV-0142611_9	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0142611_9	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0142611_9	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0142611_10	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0142611_10	Structural annotation	PF20765	NA	NA
UHGV-0142611_11	PHROG	phrog_17977	NA	unknown function
UHGV-0142611_11	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0142611_11	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0142611_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0142611_13	PHROG	phrog_212	major head protein	head and packaging
UHGV-0142611_13	UniRef90	UniRef90_A0A2V2FIN1	Phage capsid protein	NA
UHGV-0142611_13	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0142611_13	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0142611_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0142611_14	UniRef90	UniRef90_A0A174AAF6	Clp R domain-containing protein	NA
UHGV-0142611_14	Pfam	PF02861	Clp amino terminal domain, pathogenicity island component	Clp_N
UHGV-0142611_14	Structural annotation	PF06810	NA	NA
UHGV-0142611_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0142611_15	UniRef90	UniRef90_A0A6A8M6L6	HK97 gp10 family phage protein	NA
UHGV-0142611_15	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0142611_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0142611_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0142611_17	PHROG	phrog_2662	portal protein	head and packaging
UHGV-0142611_17	UniRef90	UniRef90_UPI00130401BA	minor capsid protein	NA
UHGV-0142611_17	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0142611_17	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0142611_17	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0142611_17	COG	COG2369	NA	NA
UHGV-0142611_17	Structural annotation	PF03496, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0142611_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-0142611_18	UniRef90	UniRef90_A0A174A8R0	Phage portal protein, SPP1 family	NA
UHGV-0142611_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0142611_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0142611_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0142611_19	PHROG	phrog_10250	NA	unknown function
UHGV-0142611_19	UniRef90	UniRef90_N2BLR4	PBSX family phage terminase, large subunit	NA
UHGV-0142611_19	eggNOG-mapper	1111121.HMPREF1247_0800	Terminase-like family	NA
UHGV-0142611_19	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0142611_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0142611_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0142611_19	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0142611_20	PHROG	phrog_4102	terminase small subunit	head and packaging
UHGV-0142611_20	UniRef90	UniRef90_UPI0013662E3C	helix-turn-helix domain-containing protein	NA
UHGV-0142611_20	eggNOG-mapper	1232436.CAPF01000009_gene1763	NA	NA
UHGV-0142611_20	Structural annotation	PF02796	NA	NA
UHGV-0142611_23	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0142611_23	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0142611_23	UniRef90	UniRef90_C4F8G4	Methyltransferase	NA
UHGV-0142611_23	eggNOG-mapper	521003.COLINT_02335	DNA methylase	NA
UHGV-0142611_23	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0142611_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0142611_23	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0142611_23	COG	COG0863	DNA modification methylase	NA
UHGV-0142611_23	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0142611_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0142611_26	PHROG	phrog_26324	DNA methyltransferase	other
UHGV-0142611_26	UniRef90	UniRef90_UPI001BB1FE8B	DNA cytosine methyltransferase	NA
UHGV-0142611_26	eggNOG-mapper	742722.HMPREF9463_00216	C-5 cytosine-specific DNA methylase	NA
UHGV-0142611_26	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0142611_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0142611_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0142611_27	UniRef90	UniRef90_UPI0011065E54	helix-turn-helix domain-containing protein	NA
UHGV-0142611_27	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0142611_27	Structural annotation	PF01381, NF010465, COG3655	NA	NA
UHGV-0142611_29	PHROG	phrog_3392	NA	unknown function
UHGV-0142611_29	eggNOG-mapper	1308863.U5J9Q1_9CAUD	NA	NA
UHGV-0142611_30	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0142611_30	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0142611_30	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0142611_30	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0142611_30	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0142611_31	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0142611_31	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0142611_31	UniRef90	UniRef90_A0A354HEP8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0142611_31	eggNOG-mapper	1384484.AEQU_0049	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0142611_31	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0142611_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0142611_31	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0142611_32	PHROG	phrog_4502	NA	unknown function
UHGV-0142611_32	UniRef90	UniRef90_UPI0011A81AA2	potassium-transporting ATPase subunit KdpA	NA
UHGV-0142611_32	eggNOG-mapper	1499683.CCFF01000005_gene67	NA	NA
UHGV-0142611_34	Structural annotation	PF06530	NA	NA
UHGV-0142611_36	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0142611_36	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0142611_36	UniRef90	UniRef90_UPI00110588D4	ATP-binding protein	NA
UHGV-0142611_36	eggNOG-mapper	1232453.BAIF02000006_gene1450	Bacterial dnaA protein	NA
UHGV-0142611_36	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0142611_36	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0142611_36	Structural annotation	PF01695, PF06827, MF_00377, NF005992, COG1484	NA	NA
UHGV-0142611_37	PHROG	phrog_15768	NA	unknown function
UHGV-0142611_37	eggNOG-mapper	445970.ALIPUT_02689	DNA-binding transcription factor activity	NA
UHGV-0142611_37	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA