UHGV-0142742

Genome information

Genome length 36,603 bps

CDS count 56

Completeness 100.00% (complete)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142742
vOTU ID	vOTU-046064
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_443550
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	36
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	92.51
Jumbo phage	No

Genome content
Genome length	36,603 bps
GC content	41.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.93%
Average CDS length	605.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142742_1	PHROG	phrog_12172	NA	unknown function
UHGV-0142742_1	eggNOG-mapper	1005705.HMPREF9967_0378	NA	NA
UHGV-0142742_2	KOfam	K14059	int; integrase	NA
UHGV-0142742_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0142742_2	UniRef90	UniRef90_A0A428EZR2	Tyrosine recombinase XerD	NA
UHGV-0142742_2	eggNOG-mapper	565664.EFXG_01811	Phage integrase family	NA
UHGV-0142742_2	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0142742_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0142742_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0142742_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0142742_4	PHROG	phrog_87	metallo-protease	other
UHGV-0142742_4	UniRef90	UniRef90_D0RVK4	Peptidase_M78 domain-containing protein	NA
UHGV-0142742_4	eggNOG-mapper	1035189.HMPREF9954_1970	IrrE N-terminal-like domain	NA
UHGV-0142742_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0142742_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0142742_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0142742_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0142742_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0142742_5	UniRef90	UniRef90_A0A0F2CJG8	Transcriptional repressor DicA	NA
UHGV-0142742_5	eggNOG-mapper	469609.HMPREF0847_01324	Helix-turn-helix XRE-family like proteins	NA
UHGV-0142742_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0142742_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0142742_5	Structural annotation	PF01381, MF_00535, TIGR02607, COG3655	NA	NA
UHGV-0142742_6	UniRef90	UniRef90_UPI001EDEB337	XRE family transcriptional regulator	NA
UHGV-0142742_6	eggNOG-mapper	469609.HMPREF0847_02166	NA	NA
UHGV-0142742_6	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0142742_7	Structural annotation	NF041485	NA	NA
UHGV-0142742_8	PHROG	phrog_4488	NA	unknown function
UHGV-0142742_8	UniRef90	UniRef90_Q7Y4L1	Gp13	NA
UHGV-0142742_9	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0142742_9	UniRef90	UniRef90_F5VYT4	NA	NA
UHGV-0142742_9	eggNOG-mapper	1005705.HMPREF9967_1018	NA	NA
UHGV-0142742_9	Structural annotation	COG2250	NA	NA
UHGV-0142742_10	PHROG	phrog_8019	NA	unknown function
UHGV-0142742_11	PHROG	phrog_33411	NA	unknown function
UHGV-0142742_12	PHROG	phrog_904	excisionase	integration and excision
UHGV-0142742_12	UniRef90	UniRef90_A0A4D6AYZ1	Excisionase	NA
UHGV-0142742_12	eggNOG-mapper	888821.HMPREF9394_1623	NA	NA
UHGV-0142742_12	Structural annotation	PF20063	NA	NA
UHGV-0142742_13	PHROG	phrog_7964	NA	unknown function
UHGV-0142742_13	UniRef90	UniRef90_UPI001CBC8ED2	polymer-forming cytoskeletal protein	NA
UHGV-0142742_13	eggNOG-mapper	1403946.Q615_SPAC00127G0158	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0142742_13	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0142742_13	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0142742_16	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0142742_16	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0142742_16	UniRef90	UniRef90_A0A4D6AWJ8	DNA replication protein	NA
UHGV-0142742_16	eggNOG-mapper	1282664.H354_07565	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0142742_16	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0142742_16	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0142742_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0142742_16	Structural annotation	PF07261, TIGR01446, COG3935	NA	NA
UHGV-0142742_17	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0142742_17	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0142742_17	UniRef90	UniRef90_A0A1X1GLG3	AAA domain-containing protein	NA
UHGV-0142742_17	eggNOG-mapper	12402.Q708R1_9CAUD	IstB-like ATP binding protein	NA
UHGV-0142742_17	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0142742_17	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-0142742_18	PHROG	phrog_2113	NA	unknown function
UHGV-0142742_18	UniRef90	UniRef90_UPI001CC0FA37	DNA-binding protein	NA
UHGV-0142742_18	eggNOG-mapper	764299.STRIC_2517	NA	NA
UHGV-0142742_18	Structural annotation	PF11994, MF_01177, TIGR02944, COG1959	NA	NA
UHGV-0142742_19	PHROG	phrog_17539	NA	unknown function
UHGV-0142742_20	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0142742_20	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0142742_20	UniRef90	UniRef90_A0A428F014	Recombination and repair protein RecT	NA
UHGV-0142742_20	eggNOG-mapper	482234.SCAZ3_03600	Recombinational DNA repair protein (RecE pathway)	NA
UHGV-0142742_20	Pfam	PF03837	RecT family	RecT
UHGV-0142742_20	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0142742_20	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0142742_20	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0142742_21	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0142742_21	UniRef90	UniRef90_A0A428EZS9	PD-(D/E)XK nuclease superfamily protein	NA
UHGV-0142742_21	eggNOG-mapper	997830.HMPREF1124_0581	NA	NA
UHGV-0142742_21	Pfam	PF12684	NA	DUF3799
UHGV-0142742_21	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0142742_21	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0142742_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0142742_22	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0142742_22	UniRef90	UniRef90_A0A4V0ES15	Holliday junction resolvase	NA
UHGV-0142742_22	eggNOG-mapper	1035189.HMPREF9954_0297	holliday junction resolvase	NA
UHGV-0142742_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0142742_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0142742_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0142742_23	PHROG	phrog_1921	NA	unknown function
UHGV-0142742_24	PHROG	phrog_1992	MazG-like pyrophosphatase	other
UHGV-0142742_24	UniRef90	UniRef90_UPI001D08DFC2	MazG-like family protein	NA
UHGV-0142742_24	eggNOG-mapper	537874.B3GVZ0_9CAUD	protein disulfide oxidoreductase activity	NA
UHGV-0142742_24	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0142742_24	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0142742_25	PHROG	phrog_236	nucleotide kinase	other
UHGV-0142742_25	UniRef90	UniRef90_I0S8Y0	PF11753 family protein	NA
UHGV-0142742_25	eggNOG-mapper	1403946.Q615_SPAC00127G0145	NA	NA
UHGV-0142742_25	Pfam	PF11753	NA	DUF3310
UHGV-0142742_26	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0142742_26	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0142742_26	UniRef90	UniRef90_UPI0019D22594	N-6 DNA methylase	NA
UHGV-0142742_26	eggNOG-mapper	1095750.HMPREF9970_0171	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0142742_26	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0142742_26	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0142742_26	Structural annotation	PF02475, MF_02217, NF000058, COG2263	NA	NA
UHGV-0142742_27	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0142742_27	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0142742_27	UniRef90	UniRef90_UPI0019D02FA5	N-6 DNA methylase	NA
UHGV-0142742_27	eggNOG-mapper	349123.Lreu23DRAFT_3877	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0142742_27	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0142742_27	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0142742_27	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0142742_27	Structural annotation	PF02384, TIGR00497, COG0286	NA	NA
UHGV-0142742_28	PHROG	phrog_121	NA	unknown function
UHGV-0142742_28	UniRef90	UniRef90_UPI0018B0B38F	NA	NA
UHGV-0142742_28	eggNOG-mapper	365659.smi_0429	NA	NA
UHGV-0142742_28	Pfam	PF07852	NA	DUF1642
UHGV-0142742_28	Structural annotation	PF07852	NA	NA
UHGV-0142742_30	PHROG	phrog_884	NA	unknown function
UHGV-0142742_30	UniRef90	UniRef90_UPI000779BD9E	NA	NA
UHGV-0142742_30	Pfam	PF07116	NA	DUF1372
UHGV-0142742_30	Structural annotation	PF07116, COG3585	NA	NA
UHGV-0142742_32	Structural annotation	PF10400	NA	NA
UHGV-0142742_33	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0142742_33	UniRef90	UniRef90_A0A1X1GLD7	Autolysin	NA
UHGV-0142742_33	eggNOG-mapper	936154.STP_1292	Transcriptional regulator, ArpU family	NA
UHGV-0142742_33	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0142742_33	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0142742_34	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0142742_34	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0142742_34	UniRef90	UniRef90_A0A3R9KSQ6	Terminase small subunit	NA
UHGV-0142742_34	eggNOG-mapper	1054460.SPPN_00130	DNA packaging	NA
UHGV-0142742_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0142742_34	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0142742_34	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0142742_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0142742_35	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0142742_35	UniRef90	UniRef90_UPI000C180BED	PBSX family phage terminase large subunit	NA
UHGV-0142742_35	eggNOG-mapper	1121871.AUAT01000040_gene913	Phage terminase, large subunit	NA
UHGV-0142742_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0142742_35	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0142742_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0142742_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0142742_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0142742_36	PHROG	phrog_533	portal protein	head and packaging
UHGV-0142742_36	UniRef90	UniRef90_A0A1F0AVC3	Capsid protein	NA
UHGV-0142742_36	eggNOG-mapper	537874.B3GW00_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0142742_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0142742_36	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0142742_36	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0142742_37	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0142742_37	UniRef90	UniRef90_UPI0007793CD6	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0142742_37	eggNOG-mapper	537874.B3GW01_9CAUD	Phage minor capsid protein 2	NA
UHGV-0142742_37	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0142742_37	Structural annotation	PF06152	NA	NA
UHGV-0142742_38	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0142742_38	UniRef90	UniRef90_A0A4D6AV23	Capsid and scaffold protein	NA
UHGV-0142742_38	eggNOG-mapper	646413.C5IUJ4_9CAUD	Phage minor structural protein GP20	NA
UHGV-0142742_38	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0142742_38	Structural annotation	PF06810	NA	NA
UHGV-0142742_39	PHROG	phrog_422	major head protein	head and packaging
UHGV-0142742_39	UniRef90	UniRef90_A0A1X1KL37	N4-gp56 family major capsid protein	NA
UHGV-0142742_39	eggNOG-mapper	764291.STRUR_2102	NA	NA
UHGV-0142742_39	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0142742_40	PHROG	phrog_10018	NA	unknown function
UHGV-0142742_41	PHROG	phrog_2910	NA	unknown function
UHGV-0142742_41	UniRef90	UniRef90_F9PZ37	Conserved domain protein	NA
UHGV-0142742_41	Structural annotation	PF20873	NA	NA
UHGV-0142742_42	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0142742_42	UniRef90	UniRef90_A0A501VK26	NA	NA
UHGV-0142742_42	eggNOG-mapper	764291.STRUR_2099	NA	NA
UHGV-0142742_43	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0142742_43	UniRef90	UniRef90_A0A1F0ZPS5	Minor capsid protein	NA
UHGV-0142742_43	eggNOG-mapper	537874.B3GW07_9CAUD	Minor capsid protein	NA
UHGV-0142742_43	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0142742_43	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0142742_44	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0142742_44	UniRef90	UniRef90_A0A1F0ATP2	Capsid protein	NA
UHGV-0142742_44	eggNOG-mapper	537874.B3GW08_9CAUD	Minor capsid protein	NA
UHGV-0142742_44	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0142742_44	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0142742_45	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0142742_45	UniRef90	UniRef90_A0A1F0ZPS1	Capsid protein	NA
UHGV-0142742_45	eggNOG-mapper	646413.C5IUJ9_9CAUD	Minor capsid protein from bacteriophage	NA
UHGV-0142742_45	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0142742_45	Structural annotation	PF12691	NA	NA
UHGV-0142742_46	PHROG	phrog_820	major tail protein	tail
UHGV-0142742_46	UniRef90	UniRef90_A0A4D6AV75	Major tail shaft protein	NA
UHGV-0142742_46	eggNOG-mapper	537874.B3GW10_9CAUD	NA	NA
UHGV-0142742_46	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0142742_47	PHROG	phrog_1061	NA	unknown function
UHGV-0142742_47	UniRef90	UniRef90_A0A116M149	NA	NA
UHGV-0142742_47	eggNOG-mapper	537874.B3GW11_9CAUD	NA	NA
UHGV-0142742_47	Structural annotation	PF10666	NA	NA
UHGV-0142742_48	PHROG	phrog_706	NA	unknown function
UHGV-0142742_48	UniRef90	UniRef90_UPI001CBECD66	bacteriophage Gp15 family protein	NA
UHGV-0142742_48	eggNOG-mapper	537874.B3GW12_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-0142742_48	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0142742_48	Structural annotation	PF06854	NA	NA
UHGV-0142742_49	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0142742_49	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0142742_49	UniRef90	UniRef90_B3GW13	TMP_3 domain-containing protein	NA
UHGV-0142742_49	eggNOG-mapper	537874.B3GW13_9CAUD	NA	NA
UHGV-0142742_49	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0142742_49	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0142742_49	Structural annotation	PF20155	NA	NA
UHGV-0142742_50	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0142742_50	UniRef90	UniRef90_A0A428GXX8	Phage tail protein	NA
UHGV-0142742_50	eggNOG-mapper	537874.B3GW14_9CAUD	Phage tail protein	NA
UHGV-0142742_50	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0142742_50	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0142742_50	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0142742_51	PHROG	phrog_1330	tail protein	tail
UHGV-0142742_51	UniRef90	UniRef90_B3GW15	Gp58 domain-containing protein	NA
UHGV-0142742_51	eggNOG-mapper	537874.B3GW15_9CAUD	peptidoglycan catabolic process	NA
UHGV-0142742_51	Pfam	PF07902	gp58-like protein	Gp58
UHGV-0142742_51	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0142742_51	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0142742_53	PHROG	phrog_1554	NA	unknown function
UHGV-0142742_53	UniRef90	UniRef90_A0A4V0EM35	NA	NA
UHGV-0142742_53	eggNOG-mapper	1005705.HMPREF9967_1055	NA	NA
UHGV-0142742_53	Structural annotation	PF07104	NA	NA
UHGV-0142742_54	PHROG	phrog_1296	holin	lysis
UHGV-0142742_54	UniRef90	UniRef90_A0A139NAW6	Phage holin	NA
UHGV-0142742_55	PHROG	phrog_443	holin	lysis
UHGV-0142742_55	UniRef90	UniRef90_UPI00035E0F22	holin	NA
UHGV-0142742_55	eggNOG-mapper	1123304.AQYA01000037_gene239	NA	NA
UHGV-0142742_55	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0142742_55	Structural annotation	PF16945	NA	NA
UHGV-0142742_56	PHROG	phrog_998	endolysin	lysis
UHGV-0142742_56	UniRef90	UniRef90_A0A4D6AV63	Lysin	NA
UHGV-0142742_56	eggNOG-mapper	1069533.Sinf_0802	Bacteriophage peptidoglycan hydrolase	NA
UHGV-0142742_56	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0142742_56	Pfam	PF16775	Target recognition domain of lytic exoenzyme	ZoocinA_TRD
UHGV-0142742_56	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0142742_56	Structural annotation	PF16775, PF05382, NF008096, COG0791	NA	NA