UHGV-0142769

Genome information

Genome length 37,343 bps

CDS count 56

Completeness 95.73% (high-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142769
vOTU ID	vOTU-063631
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_433023
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.73% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.26
Jumbo phage	No

Genome content
Genome length	37,343 bps
GC content	41.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.95%
Average CDS length	609.75 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142769_1	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0142769_1	UniRef90	UniRef90_A0A174LFM0	Phage minor structural protein, N-terminal region	NA
UHGV-0142769_1	eggNOG-mapper	1232453.BAIF02000029_gene2735	cellulase activity	NA
UHGV-0142769_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0142769_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0142769_1	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0142769_2	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0142769_2	UniRef90	UniRef90_A0A174L9P7	Phage-related protein	NA
UHGV-0142769_2	eggNOG-mapper	1232453.BAIF02000028_gene2733	Phage tail protein	NA
UHGV-0142769_2	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0142769_2	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0142769_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0142769_2	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0142769_3	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0142769_3	UniRef90	UniRef90_A0A316AHI9	Tape measure domain-containing protein	NA
UHGV-0142769_3	eggNOG-mapper	1158609.I586_00092	phage tail tape measure protein	NA
UHGV-0142769_3	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0142769_3	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0142769_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0142769_3	Structural annotation	PF20155, PF06456, COG3941	NA	NA
UHGV-0142769_4	PHROG	phrog_706	NA	unknown function
UHGV-0142769_4	UniRef90	UniRef90_A0A315ZUU7	Bacteriophage Gp15 protein	NA
UHGV-0142769_4	eggNOG-mapper	1229517.AMFD01000018_gene176	Bacteriophage Gp15 protein	NA
UHGV-0142769_4	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0142769_4	Structural annotation	PF06854	NA	NA
UHGV-0142769_5	PHROG	phrog_1061	NA	unknown function
UHGV-0142769_5	Structural annotation	PF10666	NA	NA
UHGV-0142769_6	PHROG	phrog_820	major tail protein	tail
UHGV-0142769_6	UniRef90	UniRef90_A0A0V8BML3	Phage major tail shaft protein	NA
UHGV-0142769_6	eggNOG-mapper	1234679.BN424_2617	domain, Protein	NA
UHGV-0142769_6	COG	COG5492	NA	NA
UHGV-0142769_6	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0142769_7	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0142769_7	UniRef90	UniRef90_A0A315ZVV0	Bacteriophage minor capsid protein	NA
UHGV-0142769_7	eggNOG-mapper	1158601.I585_01152	Minor capsid protein from bacteriophage	NA
UHGV-0142769_7	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0142769_7	Structural annotation	PF12691	NA	NA
UHGV-0142769_8	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0142769_8	UniRef90	UniRef90_A0A315ZVX7	Minor capsid protein	NA
UHGV-0142769_8	eggNOG-mapper	768486.EHR_02600	Minor capsid protein	NA
UHGV-0142769_8	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0142769_8	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0142769_9	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0142769_9	UniRef90	UniRef90_A0A315ZUT0	Minor capsid protein	NA
UHGV-0142769_9	eggNOG-mapper	768486.EHR_02605	Minor capsid protein	NA
UHGV-0142769_9	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0142769_9	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0142769_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0142769_10	eggNOG-mapper	1234679.BN424_2621	NA	NA
UHGV-0142769_11	PHROG	phrog_840	major head protein	head and packaging
UHGV-0142769_11	UniRef90	UniRef90_UPI0010FA5D85	phage capsid protein	NA
UHGV-0142769_11	eggNOG-mapper	294382.Q5YA70_9CAUD	NA	NA
UHGV-0142769_11	Structural annotation	PF03864, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0142769_12	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0142769_12	UniRef90	UniRef90_A0A315ZWV0	Minor structural protein GP20	NA
UHGV-0142769_12	eggNOG-mapper	1234679.BN424_2623	Phage minor structural protein GP20	NA
UHGV-0142769_12	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0142769_12	Structural annotation	PF06810	NA	NA
UHGV-0142769_14	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0142769_14	UniRef90	UniRef90_UPI00045A30A9	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0142769_14	eggNOG-mapper	768486.EHR_02630	Phage minor capsid protein 2	NA
UHGV-0142769_14	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0142769_14	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0142769_14	COG	COG2369	NA	NA
UHGV-0142769_14	Structural annotation	PF06152	NA	NA
UHGV-0142769_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-0142769_15	UniRef90	UniRef90_UPI001A9AE1B8	phage portal protein	NA
UHGV-0142769_15	eggNOG-mapper	1158601.I585_01160	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0142769_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0142769_15	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0142769_15	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0142769_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0142769_16	PHROG	phrog_29775	NA	unknown function
UHGV-0142769_16	UniRef90	UniRef90_U6S3B8	Phage terminase, large subunit, PBSX family	NA
UHGV-0142769_16	eggNOG-mapper	1300150.EMQU_2269	Phage terminase, large subunit, PBSX family	NA
UHGV-0142769_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0142769_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0142769_16	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0142769_17	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0142769_17	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0142769_17	UniRef90	UniRef90_A0A174LG07	Terminase small subunit	NA
UHGV-0142769_17	eggNOG-mapper	411490.ANACAC_00784	terminase, small subunit	NA
UHGV-0142769_17	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0142769_17	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0142769_17	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0142769_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0142769_19	UniRef90	UniRef90_A0A174EB71	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-0142769_19	eggNOG-mapper	936573.HMPREF1147_1713	NA	NA
UHGV-0142769_19	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0142769_22	UniRef90	UniRef90_A0A3E2WE90	NA	NA
UHGV-0142769_22	eggNOG-mapper	1232453.BAIF02000086_gene329	NA	NA
UHGV-0142769_22	Pfam	PF14199	NA	DUF4317
UHGV-0142769_22	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0142769_24	PHROG	phrog_16527	NA	unknown function
UHGV-0142769_25	PHROG	phrog_419	NA	unknown function
UHGV-0142769_25	UniRef90	UniRef90_A0A4U9RIR3	NA	NA
UHGV-0142769_25	eggNOG-mapper	476272.RUMHYD_03324	NA	NA
UHGV-0142769_26	UniRef90	UniRef90_A0A6B4RTS0	NA	NA
UHGV-0142769_27	PHROG	phrog_32023	NA	unknown function
UHGV-0142769_27	eggNOG-mapper	457421.CBFG_01561	NA	NA
UHGV-0142769_27	NCBIFam	NF041591.1	VVA0879 family protein	NA
UHGV-0142769_28	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0142769_28	UniRef90	UniRef90_A0A413WQZ9	Methyltransferase domain-containing protein	NA
UHGV-0142769_28	eggNOG-mapper	1497679.EP56_08455	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0142769_28	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0142769_28	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0142769_28	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0142769_28	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0142769_32	PHROG	phrog_154	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0142769_32	Structural annotation	PF17399	NA	NA
UHGV-0142769_33	PHROG	phrog_23374	NA	unknown function
UHGV-0142769_33	eggNOG-mapper	1256908.HMPREF0373_00664	NA	NA
UHGV-0142769_34	PHROG	phrog_953	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0142769_34	UniRef90	UniRef90_A0A024B1I9	AP2/ERF domain-containing protein	NA
UHGV-0142769_34	eggNOG-mapper	1235790.C805_02359	NA	NA
UHGV-0142769_35	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0142769_35	UniRef90	UniRef90_UPI00156EF603	NA	NA
UHGV-0142769_35	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0142769_35	Pfam	PF06048	NA	DUF927
UHGV-0142769_35	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0142769_35	COG	COG5519	NA	NA
UHGV-0142769_35	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0142769_36	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0142769_36	PHROG	phrog_11992	NA	unknown function
UHGV-0142769_36	UniRef90	UniRef90_A0A3E2X2Q5	DNA primase	NA
UHGV-0142769_36	eggNOG-mapper	658655.HMPREF0988_02582	CHC2 zinc finger	NA
UHGV-0142769_36	PADLOC	drt-UG29	DRT	DRT
UHGV-0142769_36	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0142769_36	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0142769_36	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0142769_37	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0142769_37	UniRef90	UniRef90_A0A3E5EK62	ERCC4 domain-containing protein	NA
UHGV-0142769_37	eggNOG-mapper	658655.HMPREF0988_02583	ERCC4 domain	NA
UHGV-0142769_37	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0142769_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0142769_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0142769_38	UniRef90	UniRef90_UPI001D054163	single-stranded DNA-binding protein	NA
UHGV-0142769_38	eggNOG-mapper	658655.HMPREF0988_02584	Single-strand binding protein family	NA
UHGV-0142769_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0142769_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0142769_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0142769_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0142769_38	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0142769_39	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0142769_39	UniRef90	UniRef90_UPI00156E0EBD	ERF family protein	NA
UHGV-0142769_39	eggNOG-mapper	411460.RUMTOR_02066	ERF superfamily	NA
UHGV-0142769_39	Pfam	PF04404	ERF superfamily	ERF
UHGV-0142769_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0142769_39	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0142769_40	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0142769_41	PHROG	phrog_674	NA	unknown function
UHGV-0142769_41	UniRef90	UniRef90_A0A373SW80	NA	NA
UHGV-0142769_41	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0142769_41	Pfam	PF07083	NA	DUF1351
UHGV-0142769_41	Structural annotation	PF07083	NA	NA
UHGV-0142769_47	AcrCatalog	cluster_114558	NA	NA
UHGV-0142769_48	PHROG	phrog_750	NA	unknown function
UHGV-0142769_48	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-0142769_48	Structural annotation	PF13835, TIGR01714, COG1321	NA	NA
UHGV-0142769_50	UniRef90	UniRef90_UPI00067F1813	helix-turn-helix domain-containing protein	NA
UHGV-0142769_50	eggNOG-mapper	610130.Closa_1362	Helix-turn-helix domain	NA
UHGV-0142769_50	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0142769_50	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0142769_50	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0142769_51	UniRef90	UniRef90_R6SHW8	Helix-turn-helix	NA
UHGV-0142769_51	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0142769_51	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0142769_51	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0142769_51	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0142769_52	PHROG	phrog_87	metallo-protease	other
UHGV-0142769_52	UniRef90	UniRef90_UPI000E41BBF0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0142769_52	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0142769_52	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0142769_52	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0142769_52	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0142769_54	KOfam	K14059	int; integrase	NA
UHGV-0142769_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0142769_54	UniRef90	UniRef90_A0A3E2WCH8	Site-specific integrase	NA
UHGV-0142769_54	eggNOG-mapper	1232453.BAIF02000027_gene4194	Phage integrase family	NA
UHGV-0142769_54	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0142769_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0142769_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0142769_54	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0142769_56	PHROG	phrog_13890	NA	unknown function
UHGV-0142769_56	UniRef90	UniRef90_A0A3A9H2Y4	Ribbon-helix-helix protein, CopG family	NA
UHGV-0142769_56	eggNOG-mapper	796945.HMPREF1145_0474	NA	NA
UHGV-0142769_56	Structural annotation	PF10723, NF010256, COG4877	NA	NA