UHGV-0142808

Genome information

Genome length 35,283 bps

CDS count 61

Completeness 87.35% (medium-quality)

geNomad score 0.9634

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142808
vOTU ID	vOTU-017285
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_418263
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9634
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.89
Jumbo phage	No

Genome content
Genome length	35,283 bps
GC content	29.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	86.27%
Average CDS length	502.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142808_1	eggNOG-mapper	1129794.C427_1958	NA	NA
UHGV-0142808_4	PHROG	phrog_1863	NA	unknown function
UHGV-0142808_4	eggNOG-mapper	1414720.CBYM010000002_gene554	NA	NA
UHGV-0142808_5	PHROG	phrog_1129	holin	lysis
UHGV-0142808_5	UniRef90	UniRef90_UPI0011587C98	phage holin family protein	NA
UHGV-0142808_5	eggNOG-mapper	1499683.CCFF01000017_gene2556	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0142808_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0142808_5	Structural annotation	PF16079	NA	NA
UHGV-0142808_6	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0142808_6	PHROG	phrog_435	endolysin	lysis
UHGV-0142808_6	UniRef90	UniRef90_A0A1C6JAL4	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0142808_6	eggNOG-mapper	1414720.CBYM010000002_gene552	Ami_3	NA
UHGV-0142808_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0142808_6	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0142808_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0142808_6	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0142808_7	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0142808_7	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0142808_7	UniRef90	UniRef90_A0A174I9E9	DNA-invertase Hin	NA
UHGV-0142808_7	eggNOG-mapper	1414720.CBYM010000017_gene3117	Resolvase, N terminal domain	NA
UHGV-0142808_7	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0142808_7	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0142808_7	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0142808_8	eggNOG-mapper	573061.Clocel_2949	NA	NA
UHGV-0142808_8	Structural annotation	PF05171, TIGR04108, COG3721	NA	NA
UHGV-0142808_9	KOfam	K07496	K07496; putative transposase	NA
UHGV-0142808_9	PHROG	phrog_506	transposase	integration and excision
UHGV-0142808_9	UniRef90	UniRef90_UPI0011419C19	IS200/IS605 family element RNA-guided endonuclease TnpB	NA
UHGV-0142808_9	eggNOG-mapper	592027.CLG_B1843	TIGRFAM transposase, IS605 OrfB family	NA
UHGV-0142808_9	PADLOC	Cas14u	CAS-V-F; effector__SPE	CRISPR-CAS
UHGV-0142808_9	Pfam	PF12323	Helix-turn-helix domain	HTH_OrfB_IS605
UHGV-0142808_9	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0142808_9	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0142808_9	NCBIFam	NF038281.1	IS200/IS605 family element RNA-guided endonuclease TnpB	NA
UHGV-0142808_9	COG	COG0675	Transposase	NA
UHGV-0142808_9	Structural annotation	PF07282, PF01385, NF038281, COG0675	NA	NA
UHGV-0142808_10	KOfam	K07491	rayT; REP-associated tyrosine transposase	NA
UHGV-0142808_10	PHROG	phrog_2577	transposase	integration and excision
UHGV-0142808_10	UniRef90	UniRef90_A0A6M1VPW2	IS200/IS605 family transposase	NA
UHGV-0142808_10	eggNOG-mapper	86416.Clopa_1084	Transposase	NA
UHGV-0142808_10	Pfam	PF01797	Transposase IS200 like	Y1_Tnp
UHGV-0142808_10	NCBIFam	NF033573.1	IS200/IS605 family transposase	NA
UHGV-0142808_10	COG	COG1943	REP element-mobilizing transposase RayT	NA
UHGV-0142808_10	Structural annotation	PF01797, MF_00360, NF033573, COG1943	NA	NA
UHGV-0142808_11	PHROG	phrog_14888	NA	unknown function
UHGV-0142808_12	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0142808_12	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0142808_12	UniRef90	UniRef90_A0A1C6JGT4	ALP_N domain-containing protein	NA
UHGV-0142808_12	eggNOG-mapper	1582152.A0A0A8WI45_9CAUD	NA	NA
UHGV-0142808_12	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0142808_12	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0142808_13	PHROG	phrog_11718	NA	unknown function
UHGV-0142808_13	UniRef90	UniRef90_A0A1C6KNM2	DnaA_N domain-containing protein	NA
UHGV-0142808_13	eggNOG-mapper	1334046.AYTB01000008_gene2295	NA	NA
UHGV-0142808_13	Pfam	PF11638	DnaA N-terminal domain	DnaA_N
UHGV-0142808_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0142808_13	Structural annotation	PF11638, PF07261	NA	NA
UHGV-0142808_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0142808_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0142808_14	UniRef90	UniRef90_A0A1C6KNQ1	HTH-type transcriptional regulator immR	NA
UHGV-0142808_14	eggNOG-mapper	1567011.A0A0A7RUJ5_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0142808_14	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0142808_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0142808_14	Structural annotation	PF01381, NF007257, COG1396	NA	NA
UHGV-0142808_15	UniRef90	UniRef90_A0A1C6JIL2	Transcriptional regulator, y4mF family	NA
UHGV-0142808_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0142808_15	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0142808_17	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0142808_17	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0142808_17	UniRef90	UniRef90_UPI00098B8AFD	helix-turn-helix domain-containing protein	NA
UHGV-0142808_17	eggNOG-mapper	1414720.CBYM010000002_gene594	Helix-turn-helix XRE-family like proteins	NA
UHGV-0142808_17	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0142808_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0142808_17	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0142808_19	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0142808_19	UniRef90	UniRef90_A0A174DDH4	Phage regulatory protein, Rha family	NA
UHGV-0142808_19	eggNOG-mapper	536232.CLM_1619	ORF6C domain	NA
UHGV-0142808_19	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0142808_19	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0142808_19	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0142808_19	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0142808_21	PHROG	phrog_3240	NA	unknown function
UHGV-0142808_21	UniRef90	UniRef90_Q4ZC34	ORF065	NA
UHGV-0142808_21	eggNOG-mapper	320841.Q4ZC34_9CAUD	NA	NA
UHGV-0142808_22	UniRef90	UniRef90_A0A1C6HX24	Helix-turn-helix	NA
UHGV-0142808_24	UniRef90	UniRef90_A0A1C6JI65	Spo0E like sporulation regulatory protein	NA
UHGV-0142808_24	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0142808_24	Structural annotation	PF09388	NA	NA
UHGV-0142808_27	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0142808_27	UniRef90	UniRef90_UPI001EED0456	helix-turn-helix domain-containing protein	NA
UHGV-0142808_27	eggNOG-mapper	1414720.CBYM010000001_gene675	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0142808_27	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0142808_27	Structural annotation	PF04492, MF_01819, TIGR01610, COG3355	NA	NA
UHGV-0142808_28	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0142808_28	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0142808_28	UniRef90	UniRef90_A0A1C6GY63	DNA replication protein dnaC	NA
UHGV-0142808_28	eggNOG-mapper	1414720.CBYM010000001_gene676	PFAM IstB-like ATP binding protein	NA
UHGV-0142808_28	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0142808_28	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0142808_28	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0142808_29	Structural annotation	PF11148, MF_01553, COG5503	NA	NA
UHGV-0142808_30	eggNOG-mapper	1391647.AVSV01000022_gene2528	NA	NA
UHGV-0142808_35	UniRef90	UniRef90_A0A1C6DKR2	NA	NA
UHGV-0142808_36	PHROG	phrog_3356	transposase	integration and excision
UHGV-0142808_36	UniRef90	UniRef90_I2E8Y4	Gp39	NA
UHGV-0142808_36	eggNOG-mapper	997296.PB1_16379	NA	NA
UHGV-0142808_38	KOfam	K09777	remA; extracellular matrix regulatory protein A	NA
UHGV-0142808_38	UniRef90	UniRef90_A0A8I0DNB1	NA	NA
UHGV-0142808_38	eggNOG-mapper	1414720.CBYM010000001_gene689	NA	NA
UHGV-0142808_38	Pfam	PF04025	Extracellular matrix regulatory protein A-like	RemA-like
UHGV-0142808_38	NCBIFam	NF003315.0	hypothetical protein	NA
UHGV-0142808_38	COG	COG2052	NA	NA
UHGV-0142808_38	Structural annotation	PF04025, MF_01503, NF003315, COG2052	NA	NA
UHGV-0142808_39	PHROG	phrog_9628	NA	unknown function
UHGV-0142808_39	UniRef90	UniRef90_UPI001C8CCE1F	DNA-binding response regulator	NA
UHGV-0142808_39	eggNOG-mapper	536233.CLO_1415	NA	NA
UHGV-0142808_39	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0142808_40	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0142808_40	PHROG	phrog_216	integrase	integration and excision
UHGV-0142808_40	UniRef90	UniRef90_A0A1C6GWQ2	Site-specific tyrosine recombinase XerC	NA
UHGV-0142808_40	eggNOG-mapper	1291050.JAGE01000001_gene2915	PFAM Phage integrase family	NA
UHGV-0142808_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0142808_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0142808_40	Structural annotation	PF00589, MF_01807, NF040815, COG4974	NA	NA
UHGV-0142808_41	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0142808_41	UniRef90	UniRef90_UPI0018AAA6FE	phage terminase small subunit	NA
UHGV-0142808_41	eggNOG-mapper	1294142.CINTURNW_1681	DNA packaging	NA
UHGV-0142808_41	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0142808_41	COG	COG5484	NA	NA
UHGV-0142808_41	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0142808_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0142808_42	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0142808_42	UniRef90	UniRef90_A0A381IS45	Terminase large subunit	NA
UHGV-0142808_42	eggNOG-mapper	1395513.P343_07995	Phage terminase large subunit	NA
UHGV-0142808_42	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0142808_42	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0142808_42	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0142808_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-0142808_42	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0142808_43	PHROG	phrog_64	portal protein	head and packaging
UHGV-0142808_43	UniRef90	UniRef90_UPI0018AA41B6	phage portal protein	NA
UHGV-0142808_43	eggNOG-mapper	1280692.AUJL01000025_gene2083	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0142808_43	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0142808_43	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0142808_43	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0142808_44	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0142808_44	UniRef90	UniRef90_A0A1C6HZ48	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0142808_44	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0142808_44	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0142808_44	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0142808_44	COG	COG2369	NA	NA
UHGV-0142808_44	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0142808_45	PHROG	phrog_2546	NA	unknown function
UHGV-0142808_45	UniRef90	UniRef90_UPI0018AC6E52	TM2 domain-containing protein	NA
UHGV-0142808_45	eggNOG-mapper	1280689.AUJC01000003_gene973	NA	NA
UHGV-0142808_45	Pfam	PF05154	TM2 domain	TM2
UHGV-0142808_45	Structural annotation	PF05154, PF02701, COG3478, COG2314	NA	NA
UHGV-0142808_46	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0142808_46	UniRef90	UniRef90_UPI001F3ECC8A	NA	NA
UHGV-0142808_46	eggNOG-mapper	1415774.U728_1667	NA	NA
UHGV-0142808_46	Pfam	PF14359	NA	DUF4406
UHGV-0142808_46	Structural annotation	PF14359	NA	NA
UHGV-0142808_47	PHROG	phrog_918	NA	unknown function
UHGV-0142808_47	UniRef90	UniRef90_UPI0005DA7338	NA	NA
UHGV-0142808_47	eggNOG-mapper	1499683.CCFF01000014_gene3910	NA	NA
UHGV-0142808_47	Pfam	PF19791	NA	DUF6275
UHGV-0142808_47	Structural annotation	PF19791	NA	NA
UHGV-0142808_48	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0142808_48	UniRef90	UniRef90_UPI0018AA404B	NA	NA
UHGV-0142808_48	eggNOG-mapper	1280689.AUJC01000003_gene966	NA	NA
UHGV-0142808_48	Pfam	PF14265	NA	DUF4355
UHGV-0142808_48	Structural annotation	PF14265	NA	NA
UHGV-0142808_49	PHROG	phrog_422	major head protein	head and packaging
UHGV-0142808_49	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0142808_49	eggNOG-mapper	679192.HMPREF9013_1301	NA	NA
UHGV-0142808_49	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0142808_50	PHROG	phrog_2724	NA	unknown function
UHGV-0142808_50	UniRef90	UniRef90_UPI0018A967B3	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0142808_50	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0142808_51	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0142808_51	UniRef90	UniRef90_UPI0018AC39AE	phage head-tail connector protein	NA
UHGV-0142808_51	eggNOG-mapper	1294142.CINTURNW_1692	Phage gp6-like head-tail connector protein	NA
UHGV-0142808_51	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0142808_51	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0142808_52	PHROG	phrog_2168	NA	unknown function
UHGV-0142808_52	eggNOG-mapper	1280692.AUJL01000025_gene2077	NA	NA
UHGV-0142808_52	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0142808_53	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0142808_53	UniRef90	UniRef90_A0A1C6I123	Phage protein, HK97 gp10 family	NA
UHGV-0142808_53	eggNOG-mapper	562981.HMPREF0428_01816	NA	NA
UHGV-0142808_53	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0142808_53	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0142808_53	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0142808_54	PHROG	phrog_78	tail terminator	connector
UHGV-0142808_54	eggNOG-mapper	1235800.C819_00480	NA	NA
UHGV-0142808_54	Structural annotation	PF05657	NA	NA
UHGV-0142808_55	PHROG	phrog_158	major tail protein	tail
UHGV-0142808_55	UniRef90	UniRef90_A0A1C6HZK6	Phage tail protein	NA
UHGV-0142808_55	eggNOG-mapper	1499683.CCFF01000014_gene3903	Phage tail tube protein, TTP	NA
UHGV-0142808_55	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0142808_55	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0142808_56	PHROG	phrog_2066	NA	unknown function
UHGV-0142808_56	eggNOG-mapper	562981.HMPREF0428_01812	NA	NA
UHGV-0142808_57	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0142808_57	UniRef90	UniRef90_A0A1C6I104	Phage-related protein	NA
UHGV-0142808_57	eggNOG-mapper	1499683.CCFF01000014_gene3900	phage tail tape measure protein	NA
UHGV-0142808_57	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0142808_57	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0142808_58	PHROG	phrog_1194	NA	unknown function
UHGV-0142808_58	eggNOG-mapper	1414720.CBYM010000002_gene561	NA	NA
UHGV-0142808_58	Pfam	PF20458	NA	DUF6711
UHGV-0142808_58	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0142808_59	PHROG	phrog_6616	tail protein	tail
UHGV-0142808_59	UniRef90	UniRef90_UPI0007AE71C3	gp58-like family protein	NA
UHGV-0142808_59	eggNOG-mapper	1414720.CBYM010000002_gene560	Phage minor structural protein	NA
UHGV-0142808_59	COG	COG4926	Phage-related protein	NA
UHGV-0142808_59	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0142808_61	PHROG	phrog_17334	NA	unknown function
UHGV-0142808_61	UniRef90	UniRef90_UPI0010458139	inorganic polyphosphate kinase	NA
UHGV-0142808_61	eggNOG-mapper	1414720.CBYM010000002_gene558	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0142808_61	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA