UHGV-0142810

Genome information

Genome length 37,859 bps

CDS count 51

Completeness 95.44% (high-quality)

geNomad score 0.9642

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142810
vOTU ID	vOTU-061323
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_418255
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.44% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9642
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	0.86
Jumbo phage	No

Genome content
Genome length	37,859 bps
GC content	28.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	85.09%
Average CDS length	634.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142810_1	PHROG	phrog_199	holin	lysis
UHGV-0142810_1	UniRef90	UniRef90_UPI00129E7607	phage holin family protein	NA
UHGV-0142810_1	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0142810_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0142810_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0142810_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0142810_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0142810_2	PHROG	phrog_18444	NA	unknown function
UHGV-0142810_3	PHROG	phrog_16267	NA	unknown function
UHGV-0142810_3	UniRef90	UniRef90_U2NPC0	KID repeat-containing protein	NA
UHGV-0142810_3	eggNOG-mapper	1499683.CCFF01000014_gene3896	Phage minor structural protein	NA
UHGV-0142810_3	COG	COG4926	Phage-related protein	NA
UHGV-0142810_3	Structural annotation	PF14594, PF21471, NF033848, NF012201, COG3500	NA	NA
UHGV-0142810_4	PHROG	phrog_1401	NA	unknown function
UHGV-0142810_4	UniRef90	UniRef90_UPI00129D2DCF	NA	NA
UHGV-0142810_4	eggNOG-mapper	1294142.CINTURNW_1705	NA	NA
UHGV-0142810_4	Structural annotation	PF07761	NA	NA
UHGV-0142810_5	PHROG	phrog_2566	NA	unknown function
UHGV-0142810_5	UniRef90	UniRef90_A0A7V8IA60	NA	NA
UHGV-0142810_5	eggNOG-mapper	1499683.CCFF01000014_gene3898	NA	NA
UHGV-0142810_6	PHROG	phrog_1194	NA	unknown function
UHGV-0142810_6	UniRef90	UniRef90_A0A0B3VTI7	NA	NA
UHGV-0142810_6	eggNOG-mapper	1151292.QEW_2422	NA	NA
UHGV-0142810_6	Pfam	PF20458	NA	DUF6711
UHGV-0142810_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0142810_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0142810_7	UniRef90	UniRef90_UPI0003F4F1A1	membrane protein	NA
UHGV-0142810_7	eggNOG-mapper	1391647.AVSV01000003_gene1817	phage tail tape measure protein	NA
UHGV-0142810_7	COG	COG1511	NA	NA
UHGV-0142810_8	PHROG	phrog_8355	NA	unknown function
UHGV-0142810_8	UniRef90	UniRef90_UPI00129D77AF	Gp15 family bacteriophage protein	NA
UHGV-0142810_8	eggNOG-mapper	1280692.AUJL01000027_gene2152	NA	NA
UHGV-0142810_9	PHROG	phrog_8300	NA	unknown function
UHGV-0142810_9	eggNOG-mapper	195103.CPF_0963	NA	NA
UHGV-0142810_9	Structural annotation	PF06896	NA	NA
UHGV-0142810_10	PHROG	phrog_820	major tail protein	tail
UHGV-0142810_10	UniRef90	UniRef90_U2PYP6	Big_5 domain-containing protein	NA
UHGV-0142810_10	eggNOG-mapper	1280692.AUJL01000027_gene2154	domain, Protein	NA
UHGV-0142810_10	COG	COG5492	NA	NA
UHGV-0142810_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0142810_11	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0142810_11	UniRef90	UniRef90_UPI00129ED4DA	minor capsid protein	NA
UHGV-0142810_11	eggNOG-mapper	1280692.AUJL01000027_gene2155	NA	NA
UHGV-0142810_11	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0142810_11	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0142810_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0142810_12	UniRef90	UniRef90_UPI00058FDD53	minor capsid protein	NA
UHGV-0142810_12	eggNOG-mapper	1415775.U729_2609	NA	NA
UHGV-0142810_13	PHROG	phrog_8710	NA	unknown function
UHGV-0142810_13	UniRef90	UniRef90_UPI0018A9BDCF	ParB/RepB/Spo0J family partition protein	NA
UHGV-0142810_13	eggNOG-mapper	717606.PaecuDRAFT_3126	NA	NA
UHGV-0142810_13	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0142810_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0142810_14	eggNOG-mapper	1280692.AUJL01000027_gene2158	NA	NA
UHGV-0142810_15	PHROG	phrog_1378	NA	unknown function
UHGV-0142810_15	UniRef90	UniRef90_A0A0B3VH35	HALZ domain-containing protein	NA
UHGV-0142810_15	eggNOG-mapper	1391647.AVSV01000003_gene1809	NA	NA
UHGV-0142810_16	PHROG	phrog_422	major head protein	head and packaging
UHGV-0142810_16	UniRef90	UniRef90_UPI00129DE889	capsid protein	NA
UHGV-0142810_16	eggNOG-mapper	195103.CPF_0956	NA	NA
UHGV-0142810_16	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0142810_17	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0142810_17	UniRef90	UniRef90_A0A0N7BTJ7	NA	NA
UHGV-0142810_17	eggNOG-mapper	1280692.AUJL01000027_gene2161	NA	NA
UHGV-0142810_17	Structural annotation	PF10788	NA	NA
UHGV-0142810_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0142810_19	UniRef90	UniRef90_UPI00129E2690	capsid protein	NA
UHGV-0142810_19	eggNOG-mapper	1305708.M9Q2F2_9CAUD	Phage minor capsid protein 2	NA
UHGV-0142810_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0142810_19	Structural annotation	PF06152	NA	NA
UHGV-0142810_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0142810_20	UniRef90	UniRef90_UPI00129DA072	phage portal protein	NA
UHGV-0142810_20	eggNOG-mapper	1280692.AUJL01000027_gene2165	NA	NA
UHGV-0142810_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0142810_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0142810_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0142810_21	UniRef90	UniRef90_A0A0B3VH41	Terminase	NA
UHGV-0142810_21	eggNOG-mapper	1391647.AVSV01000003_gene1802	Phage terminase, large subunit, PBSX family	NA
UHGV-0142810_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0142810_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0142810_21	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0142810_22	PHROG	phrog_419	NA	unknown function
UHGV-0142810_22	UniRef90	UniRef90_UPI001C4DCDCC	PGDYG domain-containing protein	NA
UHGV-0142810_22	eggNOG-mapper	1499683.CCFF01000005_gene67	NA	NA
UHGV-0142810_23	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0142810_23	UniRef90	UniRef90_A0A1C6HZX5	Phage terminase small subunit	NA
UHGV-0142810_23	eggNOG-mapper	1211817.CCAT010000007_gene1043	DNA packaging	NA
UHGV-0142810_23	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0142810_23	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0142810_23	COG	COG5484	NA	NA
UHGV-0142810_23	Structural annotation	PF10668, PF01920, NF040601, COG5484	NA	NA
UHGV-0142810_25	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0142810_25	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0142810_25	UniRef90	UniRef90_UPI00129D556A	recombinase family protein	NA
UHGV-0142810_25	eggNOG-mapper	1415774.U728_3758	Resolvase, N terminal domain	NA
UHGV-0142810_25	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0142810_25	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0142810_25	Structural annotation	PF00239, NF009949, COG1961	NA	NA
UHGV-0142810_26	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0142810_26	PHROG	phrog_216	integrase	integration and excision
UHGV-0142810_26	UniRef90	UniRef90_A0A0B3WNN4	Integrase	NA
UHGV-0142810_26	eggNOG-mapper	457396.CSBG_01042	Phage integrase family	NA
UHGV-0142810_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0142810_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0142810_26	Structural annotation	PF00589, MF_01807, NF040815, COG4974	NA	NA
UHGV-0142810_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0142810_27	UniRef90	UniRef90_A0A0B3VH46	Sigma70_r4 domain-containing protein	NA
UHGV-0142810_27	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0142810_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0142810_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0142810_28	UniRef90	UniRef90_A0A381KN57	Single-strand binding protein	NA
UHGV-0142810_28	eggNOG-mapper	1391646.AVSU01000021_gene3267	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0142810_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0142810_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0142810_29	PHROG	phrog_12305	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0142810_29	UniRef90	UniRef90_UPI0013F06848	ParB/RepB/Spo0J family partition protein	NA
UHGV-0142810_29	eggNOG-mapper	485918.Cpin_3847	ParB-like nuclease domain	NA
UHGV-0142810_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0142810_29	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0142810_29	Structural annotation	PF02195, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0142810_30	PHROG	phrog_5558	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0142810_32	PHROG	phrog_17098	NA	unknown function
UHGV-0142810_33	UniRef90	UniRef90_UPI00129E49C1	aspartyl-phosphate phosphatase Spo0E family protein	NA
UHGV-0142810_33	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0142810_35	eggNOG-mapper	536233.CLO_0567	NA	NA
UHGV-0142810_35	Structural annotation	PF05171, TIGR04108, COG3721	NA	NA
UHGV-0142810_37	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0142810_37	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0142810_37	eggNOG-mapper	1321814.HMPREF9089_00921	NA	NA
UHGV-0142810_37	Structural annotation	PF21578	NA	NA
UHGV-0142810_39	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0142810_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0142810_39	UniRef90	UniRef90_A0A1C5VE12	Transcriptional repressor DicA	NA
UHGV-0142810_39	eggNOG-mapper	1211817.CCAT010000049_gene2457	Helix-turn-helix XRE-family like proteins	NA
UHGV-0142810_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0142810_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0142810_39	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0142810_41	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0142810_41	PHROG	phrog_3502	NA	unknown function
UHGV-0142810_41	UniRef90	UniRef90_UPI00129E9C7B	transcriptional repressor LexA	NA
UHGV-0142810_41	eggNOG-mapper	1301100.HG529301_gene3133	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0142810_41	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0142810_41	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0142810_41	NCBIFam	TIGR00498.1	transcriptional repressor LexA	NA
UHGV-0142810_41	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0142810_41	Structural annotation	PF00717, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0142810_42	PHROG	phrog_6493	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0142810_42	UniRef90	UniRef90_UPI00083559E8	NA	NA
UHGV-0142810_42	eggNOG-mapper	1121422.AUMW01000049_gene1257	Transcriptional regulator	NA
UHGV-0142810_42	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0142810_42	Structural annotation	PF09524, PF08679, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-0142810_44	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0142810_44	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0142810_44	UniRef90	UniRef90_A0A1M6NCK3	DNA replication protein DnaC	NA
UHGV-0142810_44	eggNOG-mapper	1304284.L21TH_0075	DNA replication protein	NA
UHGV-0142810_44	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0142810_44	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0142810_45	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0142810_45	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0142810_45	UniRef90	UniRef90_A0A336QQZ8	StbA family protein	NA
UHGV-0142810_45	eggNOG-mapper	1280689.AUJC01000011_gene1499	cell division	NA
UHGV-0142810_45	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0142810_45	Pfam	PF21522	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
UHGV-0142810_45	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-0142810_45	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0142810_50	UniRef90	UniRef90_UPI0018980AA7	VanZ family protein	NA
UHGV-0142810_50	eggNOG-mapper	1414720.CBYM010000003_gene406	PFAM VanZ	NA
UHGV-0142810_50	Pfam	PF04892	VanZ like family	VanZ
UHGV-0142810_50	COG	COG4767	Glycopeptide antibiotics resistance protein	NA
UHGV-0142810_51	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0142810_51	PHROG	phrog_435	endolysin	lysis
UHGV-0142810_51	UniRef90	UniRef90_UPI00164D4639	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0142810_51	eggNOG-mapper	1301100.HG529263_gene674	Ami_3	NA
UHGV-0142810_51	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0142810_51	Pfam	PF05036	SPOR domain	SPOR
UHGV-0142810_51	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0142810_51	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA