UHGV-0142831

Genome information

Genome length 45,725 bps

CDS count 59

Completeness 99.90% (high-quality)

geNomad score 0.9693

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142831
vOTU ID	vOTU-066236
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_434348
BioSample	SAMN06018972
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9693
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.5
Jumbo phage	No

Genome content
Genome length	45,725 bps
GC content	43.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	87.34%
Average CDS length	682.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142831_1	UniRef90	UniRef90_A0A373VLW4	Conjugal transfer protein (Fragment)	NA
UHGV-0142831_1	eggNOG-mapper	1232452.BAIB02000008_gene1926	NA	NA
UHGV-0142831_1	Pfam	PF19478	TrbL/VirB6 plasmid conjugal transfer like protein	TrbL_2
UHGV-0142831_2	UniRef90	UniRef90_K4L0B9	MAFF2 protein	NA
UHGV-0142831_2	eggNOG-mapper	397291.C804_06170	Maff2 family	NA
UHGV-0142831_2	Pfam	PF12750	Maff2 family	Maff2
UHGV-0142831_6	KOfam	K03205	virD4, lvhD4; type IV secretion system protein VirD4 [EC:7.4.2.8]	NA
UHGV-0142831_6	UniRef90	UniRef90_A0A1C5XVA8	Conjugal transfer protein traG	NA
UHGV-0142831_6	eggNOG-mapper	411483.FAEPRAA2165_00053	Type IV secretory pathway, VirD4 components	NA
UHGV-0142831_6	Pfam	PF02534	Type IV secretory system Conjugative DNA transfer	T4SS-DNA_transf
UHGV-0142831_6	COG	COG3505	Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase	NA
UHGV-0142831_6	Structural annotation	PF02534, NF010472, COG3505	NA	NA
UHGV-0142831_7	PHROG	phrog_34625	NA	unknown function
UHGV-0142831_7	UniRef90	UniRef90_A0A0N0NSK0	Conjugal transfer protein	NA
UHGV-0142831_7	eggNOG-mapper	411468.CLOSCI_01092	NA	NA
UHGV-0142831_7	Pfam	PF12687	NA	DUF3801
UHGV-0142831_7	Structural annotation	PF12687, TIGR04140	NA	NA
UHGV-0142831_8	UniRef90	UniRef90_A0A328UHK3	NA	NA
UHGV-0142831_8	eggNOG-mapper	936375.HMPREF1152_0804	NA	NA
UHGV-0142831_8	Pfam	PF17295	NA	DUF5348
UHGV-0142831_8	Structural annotation	PF17295	NA	NA
UHGV-0142831_9	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0142831_9	UniRef90	UniRef90_A0A412F145	Helix-turn-helix domain-containing protein	NA
UHGV-0142831_9	eggNOG-mapper	272563.CD630_11180	NA	NA
UHGV-0142831_9	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0142831_9	Pfam	PF19481	NA	DUF6017
UHGV-0142831_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0142831_9	Structural annotation	PF19481, TIGR04176, COG3355	NA	NA
UHGV-0142831_10	KOfam	K19265	gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]	NA
UHGV-0142831_10	PHROG	phrog_8735	NA	unknown function
UHGV-0142831_10	UniRef90	UniRef90_A0A367G7G0	L-glyceraldehyde 3-phosphate reductase	NA
UHGV-0142831_10	eggNOG-mapper	622312.ROSEINA2194_01490	aldo keto reductase	NA
UHGV-0142831_10	Pfam	PF00248	Aldo/keto reductase family	Aldo_ket_red
UHGV-0142831_10	COG	COG0667	Pyridoxal reductase PdxI or related oxidoreductase, aldo/keto reductase family	NA
UHGV-0142831_11	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0142831_11	PHROG	phrog_3088	amidase	lysis
UHGV-0142831_11	UniRef90	UniRef90_A0A564VYB8	N-acetylmuramoyl-L-alanine amidase CwlH	NA
UHGV-0142831_11	eggNOG-mapper	411459.RUMOBE_00909	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0142831_11	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0142831_11	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0142831_11	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0142831_11	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0142831_11	Structural annotation	PF01832, MF_04111, NF008758, TIGR02541, COG5632, COG1705	NA	NA
UHGV-0142831_12	PHROG	phrog_199	holin	lysis
UHGV-0142831_12	UniRef90	UniRef90_A0A416QWZ9	Holin	NA
UHGV-0142831_12	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0142831_12	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0142831_12	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0142831_12	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0142831_12	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0142831_13	UniRef90	UniRef90_UPI001D0330DC	tail fiber domain-containing protein	NA
UHGV-0142831_13	eggNOG-mapper	411459.RUMOBE_00913	NA	NA
UHGV-0142831_14	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0142831_14	PHROG	phrog_1	integrase	integration and excision
UHGV-0142831_14	UniRef90	UniRef90_A0A6L8Y1E4	Tyrosine-type recombinase/integrase	NA
UHGV-0142831_14	eggNOG-mapper	411459.RUMOBE_00920	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0142831_14	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0142831_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0142831_14	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0142831_14	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0142831_15	eggNOG-mapper	411459.RUMOBE_04220	Histidine kinase	NA
UHGV-0142831_15	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0142831_16	PHROG	phrog_6616	tail protein	tail
UHGV-0142831_16	UniRef90	UniRef90_UPI00073E79CE	phage tail protein	NA
UHGV-0142831_16	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0142831_16	COG	COG4926	Phage-related protein	NA
UHGV-0142831_16	Structural annotation	PF05113, PF02010, NF033848, NF011764, COG3500	NA	NA
UHGV-0142831_17	PHROG	phrog_1401	NA	unknown function
UHGV-0142831_17	UniRef90	UniRef90_A0A7C6P910	NA	NA
UHGV-0142831_17	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-0142831_17	Structural annotation	PF07761	NA	NA
UHGV-0142831_18	PHROG	phrog_2566	NA	unknown function
UHGV-0142831_18	eggNOG-mapper	1294142.CINTURNW_1040	NA	NA
UHGV-0142831_19	PHROG	phrog_1194	NA	unknown function
UHGV-0142831_19	UniRef90	UniRef90_R5Z572	Putative phage protein	NA
UHGV-0142831_19	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0142831_19	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0142831_20	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0142831_20	UniRef90	UniRef90_A0A448W7L1	Phage-related protein	NA
UHGV-0142831_20	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0142831_20	COG	COG5412	Phage-related protein	NA
UHGV-0142831_21	PHROG	phrog_2066	NA	unknown function
UHGV-0142831_21	eggNOG-mapper	1123304.AQYA01000037_gene232	NA	NA
UHGV-0142831_22	UniRef90	UniRef90_UPI001EE8B5C4	NA	NA
UHGV-0142831_22	eggNOG-mapper	1235800.C819_00478	NA	NA
UHGV-0142831_22	Pfam	PF19591	NA	DUF6096
UHGV-0142831_22	Structural annotation	PF19591	NA	NA
UHGV-0142831_23	PHROG	phrog_158	major tail protein	tail
UHGV-0142831_23	UniRef90	UniRef90_A0A415FLM9	Phage tail protein	NA
UHGV-0142831_23	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0142831_23	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0142831_24	eggNOG-mapper	1235800.C819_00480	NA	NA
UHGV-0142831_24	Structural annotation	PF05657	NA	NA
UHGV-0142831_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0142831_25	UniRef90	UniRef90_A0A1G5F1L8	Phage protein, HK97 gp10 family	NA
UHGV-0142831_25	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0142831_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0142831_25	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0142831_25	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0142831_26	PHROG	phrog_2168	NA	unknown function
UHGV-0142831_26	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-0142831_26	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0142831_27	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0142831_27	UniRef90	UniRef90_A0A1G5F1K3	Phage gp6-like head-tail connector protein	NA
UHGV-0142831_27	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0142831_27	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0142831_27	Structural annotation	PF05135	NA	NA
UHGV-0142831_28	PHROG	phrog_2724	NA	unknown function
UHGV-0142831_28	UniRef90	UniRef90_A0A1C5VLL2	Rho termination factor, N-terminal domain	NA
UHGV-0142831_28	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0142831_28	COG	COG0261	Ribosomal protein L21	NA
UHGV-0142831_28	Structural annotation	PF07498	NA	NA
UHGV-0142831_29	PHROG	phrog_422	major head protein	head and packaging
UHGV-0142831_29	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0142831_29	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-0142831_29	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0142831_30	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0142831_30	UniRef90	UniRef90_A0A415FLT0	NA	NA
UHGV-0142831_30	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0142831_30	Pfam	PF14265	NA	DUF4355
UHGV-0142831_30	Structural annotation	PF14265	NA	NA
UHGV-0142831_31	Structural annotation	PF01281	NA	NA
UHGV-0142831_33	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0142831_33	UniRef90	UniRef90_A0A1C5VLG6	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0142831_33	eggNOG-mapper	1235800.C819_00488	Phage Mu protein F like protein	NA
UHGV-0142831_33	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0142831_33	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0142831_33	COG	COG2369	NA	NA
UHGV-0142831_33	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0142831_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0142831_34	UniRef90	UniRef90_A0A1G5F2B6	Phage portal protein, SPP1 family	NA
UHGV-0142831_34	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0142831_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0142831_34	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0142831_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0142831_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0142831_35	PHROG	phrog_10250	NA	unknown function
UHGV-0142831_35	UniRef90	UniRef90_A0A1G5F2L0	Phage terminase, large subunit, PBSX family	NA
UHGV-0142831_35	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0142831_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0142831_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0142831_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0142831_35	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0142831_36	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0142831_36	UniRef90	UniRef90_A0A564VY60	ATPase subunit of terminase (GpP-like)	NA
UHGV-0142831_36	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0142831_36	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0142831_36	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0142831_36	COG	COG5484	NA	NA
UHGV-0142831_36	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0142831_37	Structural annotation	PF15968	NA	NA
UHGV-0142831_38	eggNOG-mapper	1009370.ALO_15872	NA	NA
UHGV-0142831_38	Structural annotation	PF20505, MF_00194, NF001463, COG2974	NA	NA
UHGV-0142831_39	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0142831_39	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0142831_39	eggNOG-mapper	33035.JPJF01000139_gene3002	NA	NA
UHGV-0142831_39	Structural annotation	PF04545	NA	NA
UHGV-0142831_40	UniRef90	UniRef90_UPI001C10F2CF	SPFH domain-containing protein	NA
UHGV-0142831_40	eggNOG-mapper	537007.BLAHAN_05484	prohibitin homologues	NA
UHGV-0142831_40	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0142831_41	KOfam	K04087	hflC; modulator of FtsH protease HflC	NA
UHGV-0142831_41	PHROG	phrog_200	lipoprotein	other
UHGV-0142831_41	UniRef90	UniRef90_A0A416QWZ0	Prohibitin family protein	NA
UHGV-0142831_41	eggNOG-mapper	537007.BLAHAN_05484	prohibitin homologues	NA
UHGV-0142831_41	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0142831_41	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0142831_43	PHROG	phrog_6568	NA	unknown function
UHGV-0142831_44	PHROG	phrog_10714	NA	unknown function
UHGV-0142831_47	PHROG	phrog_7566	NA	unknown function
UHGV-0142831_47	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0142831_48	eggNOG-mapper	411459.RUMOBE_00949	NA	NA
UHGV-0142831_48	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0142831_49	PHROG	phrog_15077	NA	unknown function
UHGV-0142831_49	eggNOG-mapper	411459.RUMOBE_00949	NA	NA
UHGV-0142831_49	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0142831_50	PHROG	phrog_8470	NA	unknown function
UHGV-0142831_50	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0142831_50	eggNOG-mapper	1235792.C808_00066	PcfJ-like protein	NA
UHGV-0142831_50	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0142831_50	Structural annotation	PF14284	NA	NA
UHGV-0142831_51	eggNOG-mapper	411459.RUMOBE_00951	NA	NA
UHGV-0142831_53	UniRef90	UniRef90_A0A3S5AUR2	Ribonuclease H	NA
UHGV-0142831_53	COG	COG0328	Ribonuclease HI	NA
UHGV-0142831_53	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0142831_54	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0142831_54	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0142831_54	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0142831_54	Structural annotation	PF01446	NA	NA
UHGV-0142831_56	PHROG	phrog_2232	NA	unknown function
UHGV-0142831_56	UniRef90	UniRef90_UPI001C11A5D2	Abi-alpha family protein	NA
UHGV-0142831_56	eggNOG-mapper	397288.C806_01275	NA	NA
UHGV-0142831_56	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0142831_56	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0142831_58	UniRef90	UniRef90_UPI0015D33098	helix-turn-helix domain-containing protein	NA
UHGV-0142831_58	eggNOG-mapper	1235792.C808_05261	NA	NA
UHGV-0142831_58	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0142831_59	UniRef90	UniRef90_UPI00156F458B	XRE family transcriptional regulator	NA
UHGV-0142831_59	eggNOG-mapper	1235798.C817_00736	addiction module antidote protein HigA	NA
UHGV-0142831_59	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0142831_59	Structural annotation	PF05339, NF041951, COG1396	NA	NA