UHGV-0142841

Genome information

Genome length 38,667 bps

CDS count 64

Completeness 91.74% (high-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142841
vOTU ID	vOTU-080067
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_432243
BioSample	SAMN05545058
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.74% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.16
Jumbo phage	No

Genome content
Genome length	38,667 bps
GC content	45.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	91.76%
Average CDS length	557.53 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142841_1	KOfam	K14059	int; integrase	NA
UHGV-0142841_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0142841_1	UniRef90	UniRef90_D7GNY1	Phage integrase family	NA
UHGV-0142841_1	eggNOG-mapper	478749.BRYFOR_05407	Belongs to the 'phage' integrase family	NA
UHGV-0142841_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0142841_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0142841_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0142841_2	PHROG	phrog_16228	NA	unknown function
UHGV-0142841_2	UniRef90	UniRef90_A0A3R6MW99	Uma2 family endonuclease	NA
UHGV-0142841_2	eggNOG-mapper	1235798.C817_00615	Putative restriction endonuclease	NA
UHGV-0142841_2	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0142841_2	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0142841_2	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0142841_3	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0142841_3	PHROG	phrog_1847	NA	unknown function
UHGV-0142841_3	UniRef90	UniRef90_UPI001A9AAD56	GIY-YIG nuclease family protein	NA
UHGV-0142841_3	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0142841_3	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0142841_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0142841_3	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0142841_4	PHROG	phrog_87	metallo-protease	other
UHGV-0142841_4	UniRef90	UniRef90_UPI0011863754	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0142841_4	eggNOG-mapper	1292035.H476_1038	NA	NA
UHGV-0142841_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0142841_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0142841_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0142841_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0142841_5	UniRef90	UniRef90_A0A3R6TTL9	XRE family transcriptional regulator	NA
UHGV-0142841_5	eggNOG-mapper	1256908.HMPREF0373_00219	sequence-specific DNA binding	NA
UHGV-0142841_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0142841_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0142841_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0142841_5	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0142841_6	UniRef90	UniRef90_A0A417ACE5	HTH cro/C1-type domain-containing protein	NA
UHGV-0142841_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0142841_10	UniRef90	UniRef90_A0A3A6KFQ6	Zinc-ribbon domain-containing protein	NA
UHGV-0142841_10	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0142841_14	PHROG	phrog_14088	NA	unknown function
UHGV-0142841_14	UniRef90	UniRef90_A0A3R6M7R7	Carboxypeptidase	NA
UHGV-0142841_14	eggNOG-mapper	1256908.HMPREF0373_00648	NA	NA
UHGV-0142841_15	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0142841_15	UniRef90	UniRef90_A0A416YZ40	NA	NA
UHGV-0142841_15	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0142841_15	Structural annotation	COG2250	NA	NA
UHGV-0142841_16	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0142841_19	PHROG	phrog_3777	NA	unknown function
UHGV-0142841_19	UniRef90	UniRef90_UPI001C8F078D	NA	NA
UHGV-0142841_19	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0142841_19	Structural annotation	PF18441	NA	NA
UHGV-0142841_21	PHROG	phrog_398	NA	unknown function
UHGV-0142841_21	UniRef90	UniRef90_UPI001C01AC37	putative HNHc nuclease	NA
UHGV-0142841_21	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0142841_21	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0142841_21	Structural annotation	PF16784	NA	NA
UHGV-0142841_22	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0142841_22	UniRef90	UniRef90_A0A3A6KR40	DNA primase	NA
UHGV-0142841_22	eggNOG-mapper	478749.BRYFOR_09102	Phage plasmid primase, P4 family	NA
UHGV-0142841_22	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0142841_22	Pfam	PF19263	NA	DUF5906
UHGV-0142841_22	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0142841_22	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0142841_22	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0142841_22	Structural annotation	PF02257, PF05272, PF08706, MF_01407, NF011296, COG3378	NA	NA
UHGV-0142841_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0142841_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0142841_23	UniRef90	UniRef90_A0A3A6KA78	Single-stranded DNA-binding protein	NA
UHGV-0142841_23	eggNOG-mapper	1304866.K413DRAFT_1332	Single-stranded DNA-binding protein	NA
UHGV-0142841_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0142841_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0142841_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0142841_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0142841_23	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0142841_24	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0142841_24	UniRef90	UniRef90_A0A417AC21	Replication terminator protein	NA
UHGV-0142841_24	eggNOG-mapper	411483.FAEPRAA2165_01886	NA	NA
UHGV-0142841_25	PHROG	phrog_1029	NA	unknown function
UHGV-0142841_25	UniRef90	UniRef90_E7GRE5	NA	NA
UHGV-0142841_25	eggNOG-mapper	742740.HMPREF9474_03490	NA	NA
UHGV-0142841_26	PHROG	phrog_15077	NA	unknown function
UHGV-0142841_26	UniRef90	UniRef90_A0A1M6RQ18	RNA polymerase, alpha chain C terminal domain	NA
UHGV-0142841_26	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-0142841_26	Structural annotation	NF038070	NA	NA
UHGV-0142841_27	Structural annotation	PF04936	NA	NA
UHGV-0142841_29	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0142841_29	UniRef90	UniRef90_A0A2X0YZP6	NA	NA
UHGV-0142841_29	eggNOG-mapper	1449126.JQKL01000051_gene3179	NA	NA
UHGV-0142841_29	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0142841_30	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0142841_30	UniRef90	UniRef90_C4ZC58	HNHc domain-containing protein	NA
UHGV-0142841_30	eggNOG-mapper	999413.HMPREF1094_00227	HNH endonuclease	NA
UHGV-0142841_30	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0142841_30	Structural annotation	PF13392	NA	NA
UHGV-0142841_32	UniRef90	UniRef90_A0A3R6NW84	NA	NA
UHGV-0142841_32	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0142841_32	Pfam	PF04448	NA	DUF551
UHGV-0142841_32	Structural annotation	NF041588	NA	NA
UHGV-0142841_36	PHROG	phrog_6568	NA	unknown function
UHGV-0142841_37	PHROG	phrog_16126	NA	unknown function
UHGV-0142841_40	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0142841_40	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0142841_40	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0142841_40	Structural annotation	PF04545	NA	NA
UHGV-0142841_42	UniRef90	UniRef90_A0A3A6K7U9	Chemotaxis protein	NA
UHGV-0142841_42	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-0142841_42	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0142841_43	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0142841_43	UniRef90	UniRef90_A0A849D0W5	HNH endonuclease	NA
UHGV-0142841_43	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0142841_44	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0142841_44	UniRef90	UniRef90_A0A417ACA4	Phage terminase small subunit P27 family	NA
UHGV-0142841_44	eggNOG-mapper	1095750.HMPREF9970_2265	Phage terminase, small subunit	NA
UHGV-0142841_44	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0142841_44	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0142841_44	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0142841_44	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0142841_45	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0142841_45	UniRef90	UniRef90_A0A3A6K1R0	Terminase large subunit	NA
UHGV-0142841_45	eggNOG-mapper	1095750.HMPREF9970_2266	Phage terminase-like protein large subunit	NA
UHGV-0142841_45	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0142841_45	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0142841_45	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0142841_45	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0142841_46	PHROG	phrog_12	portal protein	head and packaging
UHGV-0142841_46	UniRef90	UniRef90_A0A3R6U3X2	Phage portal protein	NA
UHGV-0142841_46	eggNOG-mapper	1095750.HMPREF9970_2267	Phage portal protein, HK97 family	NA
UHGV-0142841_46	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0142841_46	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0142841_46	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0142841_46	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0142841_47	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0142841_47	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0142841_47	UniRef90	UniRef90_A0A3R6TKZ8	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0142841_47	eggNOG-mapper	1095750.HMPREF9970_2268	Belongs to the peptidase S14 family	NA
UHGV-0142841_47	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0142841_47	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0142841_47	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0142841_48	PHROG	phrog_10	major head protein	head and packaging
UHGV-0142841_48	UniRef90	UniRef90_A0A3A6K8H2	Phage major capsid protein	NA
UHGV-0142841_48	eggNOG-mapper	1235792.C808_03063	phage major capsid protein, HK97 family	NA
UHGV-0142841_48	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0142841_48	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0142841_48	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0142841_48	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0142841_49	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0142841_49	UniRef90	UniRef90_A0A3A6K1I0	Phage gp6-like head-tail connector protein	NA
UHGV-0142841_49	eggNOG-mapper	1095750.HMPREF9970_2270	Phage gp6-like head-tail connector protein	NA
UHGV-0142841_49	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0142841_49	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0142841_49	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0142841_50	PHROG	phrog_25	head closure Hc1	connector
UHGV-0142841_50	UniRef90	UniRef90_A0A3A6KDE6	Head-tail adaptor protein	NA
UHGV-0142841_50	eggNOG-mapper	1095750.HMPREF9970_2271	Phage head-tail joining protein	NA
UHGV-0142841_50	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0142841_50	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0142841_50	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0142841_50	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0142841_51	PHROG	phrog_525	NA	unknown function
UHGV-0142841_51	eggNOG-mapper	1408324.JNJK01000006_gene1386	NA	NA
UHGV-0142841_51	Pfam	PF20765	NA	DUF6838
UHGV-0142841_51	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0142841_52	PHROG	phrog_1480	tail sheath	tail
UHGV-0142841_52	UniRef90	UniRef90_A0A3R6I7F4	Phage tail protein	NA
UHGV-0142841_52	eggNOG-mapper	1095750.HMPREF9970_2274	Phage tail sheath C-terminal domain	NA
UHGV-0142841_52	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0142841_52	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0142841_52	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0142841_53	PHROG	phrog_365	tail protein	tail
UHGV-0142841_53	UniRef90	UniRef90_I0R7M5	PF09393 family protein	NA
UHGV-0142841_53	eggNOG-mapper	1095750.HMPREF9970_2275	Phage tail tube protein	NA
UHGV-0142841_53	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0142841_53	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0142841_54	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0142841_54	UniRef90	UniRef90_I0R7P0	Phage XkdN-like protein	NA
UHGV-0142841_54	eggNOG-mapper	1095750.HMPREF9970_2276	PFAM Phage XkdN-like protein	NA
UHGV-0142841_54	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0142841_54	Structural annotation	PF08890	NA	NA
UHGV-0142841_55	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0142841_55	UniRef90	UniRef90_A0A396MP04	HK97 gp10 family phage protein	NA
UHGV-0142841_55	eggNOG-mapper	397288.C806_00070	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0142841_55	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0142841_56	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0142841_56	UniRef90	UniRef90_A0A3A6K557	Phage tail tape measure protein	NA
UHGV-0142841_56	eggNOG-mapper	1095750.HMPREF9970_2277	Phage-related minor tail protein	NA
UHGV-0142841_56	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0142841_56	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0142841_56	COG	COG5283	Phage-related tail protein	NA
UHGV-0142841_57	KOfam	K21687	rpfA; resuscitation-promoting factor RpfA	NA
UHGV-0142841_57	PHROG	phrog_380	endolysin	lysis
UHGV-0142841_57	UniRef90	UniRef90_A0A3A6K8I1	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0142841_57	eggNOG-mapper	1095750.HMPREF9970_2278	LysM domain	NA
UHGV-0142841_57	Pfam	PF01476	LysM domain	LysM
UHGV-0142841_57	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0142841_57	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-0142841_58	PHROG	phrog_400	tail protein	tail
UHGV-0142841_58	UniRef90	UniRef90_UPI001D0F5B5C	NlpC/P60 family protein	NA
UHGV-0142841_58	eggNOG-mapper	1095750.HMPREF9970_2279	NLP P60 protein	NA
UHGV-0142841_58	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0142841_58	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0142841_59	UniRef90	UniRef90_UPI0016471BA3	NA	NA
UHGV-0142841_59	Pfam	PF10844	NA	DUF2577
UHGV-0142841_59	Structural annotation	PF10844	NA	NA
UHGV-0142841_60	PHROG	phrog_120	baseplate protein	tail
UHGV-0142841_60	UniRef90	UniRef90_A0A3A6K1J8	NA	NA
UHGV-0142841_60	eggNOG-mapper	1095750.HMPREF9970_2281	NA	NA
UHGV-0142841_60	Pfam	PF10934	NA	DUF2634
UHGV-0142841_60	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0142841_60	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0142841_61	PHROG	phrog_6	baseplate protein	tail
UHGV-0142841_61	UniRef90	UniRef90_A0A3A6KKV0	Phage tail protein	NA
UHGV-0142841_61	eggNOG-mapper	1095750.HMPREF9970_2282	baseplate J-like protein	NA
UHGV-0142841_61	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0142841_61	COG	COG3299	NA	NA
UHGV-0142841_61	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0142841_62	PHROG	phrog_521	tail protein	tail
UHGV-0142841_62	UniRef90	UniRef90_A0A3R6PYT7	NA	NA
UHGV-0142841_62	eggNOG-mapper	1195236.CTER_3988	NA	NA
UHGV-0142841_62	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0142841_62	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0142841_62	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0142841_63	PHROG	phrog_30004	NA	unknown function
UHGV-0142841_63	UniRef90	UniRef90_UPI001D07CC57	H-type lectin domain-containing protein	NA
UHGV-0142841_63	eggNOG-mapper	411902.CLOBOL_05647	nuclear chromosome segregation	NA
UHGV-0142841_63	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0142841_64	PHROG	phrog_95	integrase	integration and excision
UHGV-0142841_64	UniRef90	UniRef90_A0A416ZJB5	Recombinase family protein (Fragment)	NA
UHGV-0142841_64	eggNOG-mapper	411489.CLOL250_00702	resolvase	NA
UHGV-0142841_64	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA