UHGV-0142891

Genome information

Genome length 18,953 bps

CDS count 22

Completeness 98.50% (high-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142891
vOTU ID	vOTU-071701
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_401029
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.50% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.51
Jumbo phage	No

Genome content
Genome length	18,953 bps
GC content	37.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	22
CDS density	89.27%
Average CDS length	776.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142891_2	KOfam	K01308	yqgT; g-D-glutamyl-meso-diaminopimelate peptidase [EC:3.4.19.11]	NA
UHGV-0142891_2	eggNOG-mapper	1430331.EP10_05670	Zn_pept	NA
UHGV-0142891_2	COG	COG2866	Murein tripeptide amidase MpaA	NA
UHGV-0142891_2	Structural annotation	PF00246, MF_02211, NF007897, COG2866	NA	NA
UHGV-0142891_3	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0142891_3	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0142891_3	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0142891_4	PHROG	phrog_2038	upper collar connector	connector
UHGV-0142891_4	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0142891_4	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0142891_4	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0142891_4	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0142891_5	PHROG	phrog_2248	tail protein	tail
UHGV-0142891_5	UniRef90	UniRef90_A0A843HKP3	Caud_tail_N domain-containing protein	NA
UHGV-0142891_5	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0142891_5	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0142891_5	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0142891_5	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0142891_6	PHROG	phrog_17312	tail protein	tail
UHGV-0142891_6	UniRef90	UniRef90_A0A8B5R560	NA	NA
UHGV-0142891_6	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0142891_7	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0142891_7	UniRef90	UniRef90_A0A843HGC7	Ig-like domain-containing protein	NA
UHGV-0142891_7	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0142891_7	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0142891_9	PHROG	phrog_11037	NA	unknown function
UHGV-0142891_9	eggNOG-mapper	796945.HMPREF1145_1316	Bacterial capsule synthesis protein PGA_cap	NA
UHGV-0142891_9	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0142891_9	COG	COG2843	Poly-gamma-glutamate biosynthesis protein CapA/YwtB (capsule formation), metallophosphatase superfamily	NA
UHGV-0142891_9	Structural annotation	PF18013	NA	NA
UHGV-0142891_10	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0142891_10	PHROG	phrog_435	endolysin	lysis
UHGV-0142891_10	UniRef90	UniRef90_A0A374ADF5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0142891_10	eggNOG-mapper	552396.HMPREF0863_00263	hmm pf01520	NA
UHGV-0142891_10	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0142891_10	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0142891_10	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0142891_11	PHROG	phrog_4898	holin	lysis
UHGV-0142891_12	PHROG	phrog_2150	terminase	head and packaging
UHGV-0142891_12	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-0142891_12	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0142891_12	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0142891_12	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0142891_15	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0142891_15	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0142891_15	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-0142891_15	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0142891_15	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0142891_15	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0142891_17	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0142891_17	Structural annotation	PF17427	NA	NA
UHGV-0142891_18	Structural annotation	PF17548	NA	NA