UHGV-0142959

Genome information

Genome length 45,073 bps

CDS count 75

Completeness 80.23% (medium-quality)

geNomad score 0.9697

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142959
vOTU ID	vOTU-027418
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_396460
BioSample	SAMN04161030
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9697
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.33
Jumbo phage	No

Genome content
Genome length	45,073 bps
GC content	59.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	92.91%
Average CDS length	563.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142959_1	KOfam	K09814	hrtA; hemin transport system ATP-binding protein [EC:7.6.2.-]	NA
UHGV-0142959_1	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0142959_1	UniRef90	UniRef90_S3Y3T1	ABC transporter domain-containing protein	NA
UHGV-0142959_1	eggNOG-mapper	1203568.HMPREF1484_00292	ATPases associated with a variety of cellular activities	NA
UHGV-0142959_1	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0142959_1	COG	COG1136	ABC-type lipoprotein export system, ATPase component	NA
UHGV-0142959_1	Structural annotation	PF00005, MF_01005, TIGR02211, COG1136	NA	NA
UHGV-0142959_3	UniRef90	UniRef90_A0A1B0ZJ32	HTH cro/C1-type domain-containing protein	NA
UHGV-0142959_3	eggNOG-mapper	1125718.HMPREF1318_2345	NA	NA
UHGV-0142959_3	Structural annotation	PF14590, TIGR03070, COG2944	NA	NA
UHGV-0142959_4	PHROG	phrog_443	holin	lysis
UHGV-0142959_4	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0142959_8	PHROG	phrog_21825	endolysin	lysis
UHGV-0142959_8	UniRef90	UniRef90_A0A5P2R253	CHAP domain-containing protein	NA
UHGV-0142959_8	eggNOG-mapper	1203568.HMPREF1484_00260	Peptidoglycan-binding domain 1 protein	NA
UHGV-0142959_8	Pfam	PF05257	CHAP domain	CHAP
UHGV-0142959_8	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0142959_8	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0142959_8	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-0142959_11	PHROG	phrog_38009	tail protein	tail
UHGV-0142959_11	UniRef90	UniRef90_UPI000B3BBD90	carbohydrate binding domain-containing protein	NA
UHGV-0142959_11	eggNOG-mapper	1203568.HMPREF1484_01971	NA	NA
UHGV-0142959_11	Structural annotation	PF14879, PF01176, MF_00075, NF033679, NF033675, TIGR00008, COG0361	NA	NA
UHGV-0142959_12	PHROG	phrog_1885	minor tail protein	tail
UHGV-0142959_12	UniRef90	UniRef90_UPI001E2ECF69	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0142959_12	eggNOG-mapper	1064537.AGSO01000002_gene228	NA	NA
UHGV-0142959_12	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0142959_13	eggNOG-mapper	1064537.AGSO01000002_gene227	NA	NA
UHGV-0142959_13	Structural annotation	PF05475, NF033147, COG4935	NA	NA
UHGV-0142959_14	PHROG	phrog_5577	minor tail protein	tail
UHGV-0142959_14	eggNOG-mapper	1064537.AGSO01000002_gene226	NA	NA
UHGV-0142959_14	Structural annotation	PF20753, PF05709, TIGR01633, COG4722	NA	NA
UHGV-0142959_15	PHROG	phrog_971	endolysin	lysis
UHGV-0142959_15	UniRef90	UniRef90_A0A1F1XHQ9	TMP_3 domain-containing protein	NA
UHGV-0142959_15	eggNOG-mapper	1203568.HMPREF1484_00253	SLT domain	NA
UHGV-0142959_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0142959_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0142959_15	COG	COG5412	Phage-related protein	NA
UHGV-0142959_18	PHROG	phrog_476	major tail protein	tail
UHGV-0142959_18	UniRef90	UniRef90_A0A5B8JHH8	Phage tail protein	NA
UHGV-0142959_18	eggNOG-mapper	1223545.GS4_47_00210	NA	NA
UHGV-0142959_18	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0142959_20	PHROG	phrog_123	tail terminator	connector
UHGV-0142959_20	UniRef90	UniRef90_UPI0019B36224	NA	NA
UHGV-0142959_21	PHROG	phrog_387	neck protein	connector
UHGV-0142959_22	PHROG	phrog_501	head closure Hc1	connector
UHGV-0142959_23	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0142959_23	eggNOG-mapper	596328.HMPREF0578_0264	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0142959_23	Pfam	PF09355	NA	Phage_Gp19
UHGV-0142959_25	PHROG	phrog_29	major head protein	head and packaging
UHGV-0142959_25	UniRef90	UniRef90_UPI001266850E	major capsid protein	NA
UHGV-0142959_25	eggNOG-mapper	1095772.CAHH01000052_gene243	Phage major capsid protein E	NA
UHGV-0142959_25	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0142959_27	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0142959_27	UniRef90	UniRef90_UPI0012663EFE	NA	NA
UHGV-0142959_27	eggNOG-mapper	945712.CULC22_01947	NA	NA
UHGV-0142959_28	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0142959_28	eggNOG-mapper	1527493.A0A076G757_9CAUD	peptidase activity	NA
UHGV-0142959_29	PHROG	phrog_104	portal protein	head and packaging
UHGV-0142959_29	UniRef90	UniRef90_UPI0005D969A3	phage portal protein	NA
UHGV-0142959_29	eggNOG-mapper	234621.RER_22740	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0142959_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0142959_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0142959_30	UniRef90	UniRef90_A0A2N6U4B6	Terminase	NA
UHGV-0142959_30	eggNOG-mapper	1410634.JHVD01000003_gene1841	Terminase	NA
UHGV-0142959_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0142959_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0142959_31	PHROG	phrog_226	minor tail protein	tail
UHGV-0142959_31	eggNOG-mapper	1463936.JOJI01000043_gene7933	NA	NA
UHGV-0142959_33	eggNOG-mapper	446462.Amir_3266	NA	NA
UHGV-0142959_34	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0142959_34	UniRef90	UniRef90_A0A2N6U4C0	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0142959_34	eggNOG-mapper	640132.Srot_2112	sulfate reduction	NA
UHGV-0142959_34	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0142959_34	Structural annotation	PF01507, MF_00063, TIGR02057, COG0175	NA	NA
UHGV-0142959_35	PHROG	phrog_37844	NA	unknown function
UHGV-0142959_35	eggNOG-mapper	457398.HMPREF0326_02677	NA	NA
UHGV-0142959_39	UniRef90	UniRef90_S3Y3P5	Excisionase family DNA binding domain-containing protein	NA
UHGV-0142959_55	PHROG	phrog_22834	NA	unknown function
UHGV-0142959_55	eggNOG-mapper	1157637.KB892115_gene4599	NA	NA
UHGV-0142959_55	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0142959_56	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0142959_56	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0142959_56	UniRef90	UniRef90_UPI000DF161EA	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0142959_56	eggNOG-mapper	1101188.KI912155_gene1837	Endodeoxyribonuclease RusA	NA
UHGV-0142959_56	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0142959_56	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0142959_57	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0142959_57	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0142959_57	UniRef90	UniRef90_L7LIR1	Helicase C-terminal domain-containing protein	NA
UHGV-0142959_57	eggNOG-mapper	1223544.GSI01S_10_02190	DEAD-like helicases superfamily	NA
UHGV-0142959_57	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0142959_57	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0142959_57	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0142959_57	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0142959_58	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0142959_58	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0142959_58	UniRef90	UniRef90_A0A5P2QZZ4	Single-stranded DNA-binding protein	NA
UHGV-0142959_58	eggNOG-mapper	1203568.HMPREF1484_00576	Single-strand binding protein family	NA
UHGV-0142959_58	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0142959_58	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0142959_58	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0142959_58	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0142959_58	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0142959_59	PHROG	phrog_2131	NA	unknown function
UHGV-0142959_60	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0142959_60	UniRef90	UniRef90_A0A554SP13	Recombinase RecT	NA
UHGV-0142959_60	eggNOG-mapper	1504822.CCNO01000013_gene307	NA	NA
UHGV-0142959_61	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0142959_61	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0142959_61	UniRef90	UniRef90_A0A069T421	NA	NA
UHGV-0142959_61	eggNOG-mapper	1169152.AXVD01000020_gene381	NA	NA
UHGV-0142959_61	Pfam	PF12684	NA	DUF3799
UHGV-0142959_61	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0142959_61	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0142959_63	PHROG	phrog_1123	NA	unknown function
UHGV-0142959_64	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0142959_64	COG	COG1111	ERCC4-related helicase	NA
UHGV-0142959_67	eggNOG-mapper	1123248.KB893314_gene3734	Helix-turn-helix domain	NA
UHGV-0142959_67	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0142959_67	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0142959_72	PHROG	phrog_16278	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0142959_72	UniRef90	UniRef90_A0A4Q3GA19	XRE family transcriptional regulator	NA
UHGV-0142959_72	eggNOG-mapper	1203632.HMPREF1300_00906	NA	NA
UHGV-0142959_73	PHROG	phrog_87	metallo-protease	other
UHGV-0142959_73	UniRef90	UniRef90_UPI00071D2D92	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0142959_73	eggNOG-mapper	156978.CIMIT_05540	IrrE N-terminal-like domain	NA
UHGV-0142959_73	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0142959_73	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0142959_75	KOfam	K14059	int; integrase	NA
UHGV-0142959_75	PHROG	phrog_1	integrase	integration and excision
UHGV-0142959_75	UniRef90	UniRef90_UPI001E329753	site-specific integrase	NA
UHGV-0142959_75	eggNOG-mapper	1064537.AGSO01000004_gene1679	DNA integration	NA
UHGV-0142959_75	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0142959_75	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0142959_75	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0142959_75	Structural annotation	PF00589, PF02899, MF_01808, TIGR02224, COG4974	NA	NA